co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G63690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
3	GO:0015822: ornithine transport	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0006000: fructose metabolic process	1.27E-06
6	GO:2000762: regulation of phenylpropanoid metabolic process	9.69E-06
7	GO:0006002: fructose 6-phosphate metabolic process	4.85E-05
8	GO:0043609: regulation of carbon utilization	7.75E-05
9	GO:0000066: mitochondrial ornithine transport	7.75E-05
10	GO:0010450: inflorescence meristem growth	7.75E-05
11	GO:0015936: coenzyme A metabolic process	7.75E-05
12	GO:0016119: carotene metabolic process	7.75E-05
13	GO:0016560: protein import into peroxisome matrix, docking	1.85E-04
14	GO:0046373: L-arabinose metabolic process	1.85E-04
15	GO:1901959: positive regulation of cutin biosynthetic process	1.85E-04
16	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	1.85E-04
17	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.85E-04
18	GO:0005975: carbohydrate metabolic process	2.59E-04
19	GO:0045493: xylan catabolic process	3.11E-04
20	GO:0045165: cell fate commitment	3.11E-04
21	GO:2000082: regulation of L-ascorbic acid biosynthetic process	3.11E-04
22	GO:1904278: positive regulation of wax biosynthetic process	3.11E-04
23	GO:0006515: misfolded or incompletely synthesized protein catabolic process	4.49E-04
24	GO:0010305: leaf vascular tissue pattern formation	4.57E-04
25	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	5.98E-04
26	GO:0080037: negative regulation of cytokinin-activated signaling pathway	5.98E-04
27	GO:0045723: positive regulation of fatty acid biosynthetic process	5.98E-04
28	GO:1902183: regulation of shoot apical meristem development	7.57E-04
29	GO:0016123: xanthophyll biosynthetic process	7.57E-04
30	GO:0010158: abaxial cell fate specification	7.57E-04
31	GO:0016120: carotene biosynthetic process	7.57E-04
32	GO:0048827: phyllome development	9.24E-04
33	GO:0042549: photosystem II stabilization	9.24E-04
34	GO:0000741: karyogamy	9.24E-04
35	GO:0009910: negative regulation of flower development	1.18E-03
36	GO:1900057: positive regulation of leaf senescence	1.29E-03
37	GO:1900056: negative regulation of leaf senescence	1.29E-03
38	GO:0006402: mRNA catabolic process	1.48E-03
39	GO:0034968: histone lysine methylation	1.48E-03
40	GO:0009642: response to light intensity	1.48E-03
41	GO:0070413: trehalose metabolism in response to stress	1.48E-03
42	GO:0010093: specification of floral organ identity	1.69E-03
43	GO:2000024: regulation of leaf development	1.91E-03
44	GO:0009051: pentose-phosphate shunt, oxidative branch	1.91E-03
45	GO:0048507: meristem development	1.91E-03
46	GO:0016571: histone methylation	2.14E-03
47	GO:0010380: regulation of chlorophyll biosynthetic process	2.14E-03
48	GO:0043085: positive regulation of catalytic activity	2.61E-03
49	GO:1903507: negative regulation of nucleic acid-templated transcription	2.61E-03
50	GO:0009750: response to fructose	2.61E-03
51	GO:0016485: protein processing	2.61E-03
52	GO:0046856: phosphatidylinositol dephosphorylation	2.61E-03
53	GO:0005983: starch catabolic process	2.86E-03
54	GO:2000028: regulation of photoperiodism, flowering	3.12E-03
55	GO:0010229: inflorescence development	3.12E-03
56	GO:0006094: gluconeogenesis	3.12E-03
57	GO:0005986: sucrose biosynthetic process	3.12E-03
58	GO:0010207: photosystem II assembly	3.38E-03
59	GO:0009887: animal organ morphogenesis	3.38E-03
60	GO:0010540: basipetal auxin transport	3.38E-03
61	GO:0009933: meristem structural organization	3.38E-03
62	GO:0042343: indole glucosinolate metabolic process	3.66E-03
63	GO:0009944: polarity specification of adaxial/abaxial axis	4.23E-03
64	GO:0006289: nucleotide-excision repair	4.23E-03
65	GO:2000377: regulation of reactive oxygen species metabolic process	4.23E-03
66	GO:0005992: trehalose biosynthetic process	4.23E-03
67	GO:0008299: isoprenoid biosynthetic process	4.52E-03
68	GO:0009908: flower development	4.57E-03
69	GO:0003333: amino acid transmembrane transport	4.82E-03
70	GO:0098542: defense response to other organism	4.82E-03
71	GO:0006413: translational initiation	5.01E-03
72	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.13E-03
73	GO:0040007: growth	5.45E-03
74	GO:0010214: seed coat development	5.77E-03
75	GO:0019722: calcium-mediated signaling	5.77E-03
76	GO:0016117: carotenoid biosynthetic process	6.10E-03
77	GO:0006662: glycerol ether metabolic process	6.78E-03
78	GO:0010197: polar nucleus fusion	6.78E-03
79	GO:0071472: cellular response to salt stress	6.78E-03
80	GO:0010154: fruit development	6.78E-03
81	GO:0042752: regulation of circadian rhythm	7.13E-03
82	GO:0048825: cotyledon development	7.49E-03
83	GO:0016032: viral process	8.22E-03
84	GO:0007267: cell-cell signaling	9.36E-03
85	GO:0071805: potassium ion transmembrane transport	9.36E-03
86	GO:0016126: sterol biosynthetic process	1.02E-02
87	GO:0009911: positive regulation of flower development	1.02E-02
88	GO:0016311: dephosphorylation	1.18E-02
89	GO:0006351: transcription, DNA-templated	1.27E-02
90	GO:0006499: N-terminal protein myristoylation	1.31E-02
91	GO:0048527: lateral root development	1.36E-02
92	GO:0007568: aging	1.36E-02
93	GO:0009867: jasmonic acid mediated signaling pathway	1.45E-02
94	GO:0034599: cellular response to oxidative stress	1.49E-02
95	GO:0006629: lipid metabolic process	1.52E-02
96	GO:0006839: mitochondrial transport	1.59E-02
97	GO:0048364: root development	1.59E-02
98	GO:0009744: response to sucrose	1.73E-02
99	GO:0009640: photomorphogenesis	1.73E-02
100	GO:0031347: regulation of defense response	1.98E-02
101	GO:0006813: potassium ion transport	2.14E-02
102	GO:0009734: auxin-activated signaling pathway	2.15E-02
103	GO:0009909: regulation of flower development	2.30E-02
104	GO:0009626: plant-type hypersensitive response	2.52E-02
105	GO:0042545: cell wall modification	2.69E-02
106	GO:0009416: response to light stimulus	2.71E-02
107	GO:0009058: biosynthetic process	3.35E-02
108	GO:0009790: embryo development	3.61E-02
109	GO:0007623: circadian rhythm	4.06E-02
110	GO:0045490: pectin catabolic process	4.06E-02
111	GO:0009739: response to gibberellin	4.40E-02
112	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.40E-02
113	GO:0007166: cell surface receptor signaling pathway	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
3	GO:0045436: lycopene beta cyclase activity	0.00E+00
4	GO:0046556: alpha-L-arabinofuranosidase activity	5.79E-06
5	GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity	7.75E-05
6	GO:0042282: hydroxymethylglutaryl-CoA reductase activity	7.75E-05
7	GO:0004565: beta-galactosidase activity	1.40E-04
8	GO:0010291: carotene beta-ring hydroxylase activity	1.85E-04
9	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.85E-04
10	GO:0000064: L-ornithine transmembrane transporter activity	1.85E-04
11	GO:0047274: galactinol-sucrose galactosyltransferase activity	3.11E-04
12	GO:0016805: dipeptidase activity	3.11E-04
13	GO:0010429: methyl-CpNpN binding	3.11E-04
14	GO:0004180: carboxypeptidase activity	3.11E-04
15	GO:0010428: methyl-CpNpG binding	3.11E-04
16	GO:0017057: 6-phosphogluconolactonase activity	4.49E-04
17	GO:0070628: proteasome binding	5.98E-04
18	GO:0009044: xylan 1,4-beta-xylosidase activity	5.98E-04
19	GO:0002020: protease binding	7.57E-04
20	GO:0031593: polyubiquitin binding	9.24E-04
21	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	9.24E-04
22	GO:2001070: starch binding	9.24E-04
23	GO:0015174: basic amino acid transmembrane transporter activity	2.14E-03
24	GO:0008047: enzyme activator activity	2.37E-03
25	GO:0008327: methyl-CpG binding	2.61E-03
26	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.86E-03
27	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.86E-03
28	GO:0008081: phosphoric diester hydrolase activity	3.12E-03
29	GO:0043130: ubiquitin binding	4.23E-03
30	GO:0005528: FK506 binding	4.23E-03
31	GO:0003714: transcription corepressor activity	4.23E-03
32	GO:0015079: potassium ion transmembrane transporter activity	4.52E-03
33	GO:0004176: ATP-dependent peptidase activity	4.82E-03
34	GO:0016779: nucleotidyltransferase activity	5.13E-03
35	GO:0047134: protein-disulfide reductase activity	6.10E-03
36	GO:0018024: histone-lysine N-methyltransferase activity	6.10E-03
37	GO:0042802: identical protein binding	6.82E-03
38	GO:0004791: thioredoxin-disulfide reductase activity	7.13E-03
39	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.39E-03
40	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.59E-03
41	GO:0016787: hydrolase activity	8.77E-03
42	GO:0003684: damaged DNA binding	8.97E-03
43	GO:0016791: phosphatase activity	8.97E-03
44	GO:0008483: transaminase activity	9.36E-03
45	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.14E-02
46	GO:0008236: serine-type peptidase activity	1.18E-02
47	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.19E-02
48	GO:0004871: signal transducer activity	1.29E-02
49	GO:0050661: NADP binding	1.59E-02
50	GO:0042393: histone binding	1.59E-02
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.93E-02
52	GO:0008289: lipid binding	2.12E-02
53	GO:0016298: lipase activity	2.19E-02
54	GO:0008234: cysteine-type peptidase activity	2.30E-02
55	GO:0015171: amino acid transmembrane transporter activity	2.30E-02
56	GO:0045330: aspartyl esterase activity	2.30E-02
57	GO:0030599: pectinesterase activity	2.64E-02
58	GO:0015035: protein disulfide oxidoreductase activity	2.81E-02
59	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.29E-02
60	GO:0004252: serine-type endopeptidase activity	3.48E-02
61	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.86E-02
62	GO:0003743: translation initiation factor activity	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0043233: organelle lumen	0.00E+00
2	GO:0005578: proteinaceous extracellular matrix	2.38E-06
3	GO:0009505: plant-type cell wall	2.34E-05
4	GO:0005782: peroxisomal matrix	3.11E-04
5	GO:0048046: apoplast	1.51E-03
6	GO:0008180: COP9 signalosome	1.91E-03
7	GO:0005773: vacuole	3.19E-03
8	GO:0009543: chloroplast thylakoid lumen	3.90E-03
9	GO:0000775: chromosome, centromeric region	5.13E-03
10	GO:0009506: plasmodesma	6.67E-03
11	GO:0005770: late endosome	6.78E-03
12	GO:0005576: extracellular region	9.97E-03
13	GO:0030529: intracellular ribonucleoprotein complex	1.02E-02
14	GO:0019005: SCF ubiquitin ligase complex	1.22E-02
15	GO:0000502: proteasome complex	2.14E-02
16	GO:0005777: peroxisome	3.11E-02
17	GO:0009579: thylakoid	3.24E-02
18	GO:0005623: cell	3.29E-02