co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G60800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:0000372: Group I intron splicing	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0015822: ornithine transport	0.00E+00
7	GO:0090706: specification of plant organ position	0.00E+00
8	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
9	GO:0048507: meristem development	5.26E-06
10	GO:0006000: fructose metabolic process	6.40E-06
11	GO:0006094: gluconeogenesis	1.94E-05
12	GO:0016120: carotene biosynthetic process	4.37E-05
13	GO:1902183: regulation of shoot apical meristem development	4.37E-05
14	GO:0010158: abaxial cell fate specification	4.37E-05
15	GO:0000476: maturation of 4.5S rRNA	1.91E-04
16	GO:0051180: vitamin transport	1.91E-04
17	GO:0043953: protein transport by the Tat complex	1.91E-04
18	GO:0000967: rRNA 5'-end processing	1.91E-04
19	GO:0030974: thiamine pyrophosphate transport	1.91E-04
20	GO:0010480: microsporocyte differentiation	1.91E-04
21	GO:0031338: regulation of vesicle fusion	1.91E-04
22	GO:0065002: intracellular protein transmembrane transport	1.91E-04
23	GO:0043609: regulation of carbon utilization	1.91E-04
24	GO:0000066: mitochondrial ornithine transport	1.91E-04
25	GO:0010028: xanthophyll cycle	1.91E-04
26	GO:0010450: inflorescence meristem growth	1.91E-04
27	GO:0006002: fructose 6-phosphate metabolic process	1.91E-04
28	GO:0016119: carotene metabolic process	1.91E-04
29	GO:0010206: photosystem II repair	2.33E-04
30	GO:2000024: regulation of leaf development	2.33E-04
31	GO:0000373: Group II intron splicing	2.33E-04
32	GO:0009773: photosynthetic electron transport in photosystem I	3.78E-04
33	GO:0016560: protein import into peroxisome matrix, docking	4.29E-04
34	GO:0015893: drug transport	4.29E-04
35	GO:0016122: xanthophyll metabolic process	4.29E-04
36	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.29E-04
37	GO:0034470: ncRNA processing	4.29E-04
38	GO:0006421: asparaginyl-tRNA aminoacylation	6.99E-04
39	GO:0006013: mannose metabolic process	6.99E-04
40	GO:0043617: cellular response to sucrose starvation	6.99E-04
41	GO:0090630: activation of GTPase activity	6.99E-04
42	GO:0045165: cell fate commitment	6.99E-04
43	GO:0031022: nuclear migration along microfilament	6.99E-04
44	GO:0009944: polarity specification of adaxial/abaxial axis	7.65E-04
45	GO:0006515: misfolded or incompletely synthesized protein catabolic process	9.97E-04
46	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.97E-04
47	GO:0051639: actin filament network formation	9.97E-04
48	GO:0080092: regulation of pollen tube growth	1.00E-03
49	GO:0006364: rRNA processing	1.04E-03
50	GO:0009658: chloroplast organization	1.05E-03
51	GO:0006096: glycolytic process	1.28E-03
52	GO:0015994: chlorophyll metabolic process	1.32E-03
53	GO:0010109: regulation of photosynthesis	1.32E-03
54	GO:0051764: actin crosslink formation	1.32E-03
55	GO:0045727: positive regulation of translation	1.32E-03
56	GO:0010154: fruit development	1.48E-03
57	GO:0010305: leaf vascular tissue pattern formation	1.48E-03
58	GO:0009646: response to absence of light	1.59E-03
59	GO:0009904: chloroplast accumulation movement	1.68E-03
60	GO:0016123: xanthophyll biosynthetic process	1.68E-03
61	GO:0055114: oxidation-reduction process	1.87E-03
62	GO:0030163: protein catabolic process	2.07E-03
63	GO:0000741: karyogamy	2.07E-03
64	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.07E-03
65	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.07E-03
66	GO:0042549: photosystem II stabilization	2.07E-03
67	GO:0000470: maturation of LSU-rRNA	2.07E-03
68	GO:0010067: procambium histogenesis	2.49E-03
69	GO:0009942: longitudinal axis specification	2.49E-03
70	GO:0009903: chloroplast avoidance movement	2.49E-03
71	GO:0016126: sterol biosynthetic process	2.63E-03
72	GO:0048437: floral organ development	2.93E-03
73	GO:1900057: positive regulation of leaf senescence	2.93E-03
74	GO:0051510: regulation of unidimensional cell growth	2.93E-03
75	GO:1900056: negative regulation of leaf senescence	2.93E-03
76	GO:0005975: carbohydrate metabolic process	3.22E-03
77	GO:0006605: protein targeting	3.40E-03
78	GO:0010492: maintenance of shoot apical meristem identity	3.40E-03
79	GO:0034968: histone lysine methylation	3.40E-03
80	GO:0048564: photosystem I assembly	3.40E-03
81	GO:0048481: plant ovule development	3.42E-03
82	GO:0032544: plastid translation	3.88E-03
83	GO:0010093: specification of floral organ identity	3.88E-03
84	GO:0009932: cell tip growth	3.88E-03
85	GO:0009910: negative regulation of flower development	3.95E-03
86	GO:0006098: pentose-phosphate shunt	4.40E-03
87	GO:0006839: mitochondrial transport	4.92E-03
88	GO:1900865: chloroplast RNA modification	4.93E-03
89	GO:0010380: regulation of chlorophyll biosynthetic process	4.93E-03
90	GO:0016571: histone methylation	4.93E-03
91	GO:0010205: photoinhibition	4.93E-03
92	GO:0006779: porphyrin-containing compound biosynthetic process	4.93E-03
93	GO:0006782: protoporphyrinogen IX biosynthetic process	5.48E-03
94	GO:0009750: response to fructose	6.06E-03
95	GO:0048229: gametophyte development	6.06E-03
96	GO:0016485: protein processing	6.06E-03
97	GO:0005983: starch catabolic process	6.66E-03
98	GO:0018107: peptidyl-threonine phosphorylation	7.28E-03
99	GO:0010075: regulation of meristem growth	7.28E-03
100	GO:0009767: photosynthetic electron transport chain	7.28E-03
101	GO:0005986: sucrose biosynthetic process	7.28E-03
102	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.70E-03
103	GO:0009933: meristem structural organization	7.91E-03
104	GO:0010207: photosystem II assembly	7.91E-03
105	GO:0010223: secondary shoot formation	7.91E-03
106	GO:0009934: regulation of meristem structural organization	7.91E-03
107	GO:0048768: root hair cell tip growth	7.91E-03
108	GO:0042343: indole glucosinolate metabolic process	8.57E-03
109	GO:0010053: root epidermal cell differentiation	8.57E-03
110	GO:0051017: actin filament bundle assembly	9.94E-03
111	GO:0006810: transport	1.01E-02
112	GO:0006418: tRNA aminoacylation for protein translation	1.07E-02
113	GO:0098542: defense response to other organism	1.14E-02
114	GO:0061077: chaperone-mediated protein folding	1.14E-02
115	GO:0048364: root development	1.28E-02
116	GO:0009686: gibberellin biosynthetic process	1.29E-02
117	GO:0040007: growth	1.29E-02
118	GO:0001944: vasculature development	1.29E-02
119	GO:0010089: xylem development	1.37E-02
120	GO:0016117: carotenoid biosynthetic process	1.45E-02
121	GO:0010051: xylem and phloem pattern formation	1.53E-02
122	GO:0048653: anther development	1.53E-02
123	GO:0009790: embryo development	1.57E-02
124	GO:0010197: polar nucleus fusion	1.62E-02
125	GO:0009741: response to brassinosteroid	1.62E-02
126	GO:0010268: brassinosteroid homeostasis	1.62E-02
127	GO:0007018: microtubule-based movement	1.70E-02
128	GO:0009791: post-embryonic development	1.79E-02
129	GO:0007623: circadian rhythm	1.86E-02
130	GO:0016132: brassinosteroid biosynthetic process	1.88E-02
131	GO:0080156: mitochondrial mRNA modification	1.88E-02
132	GO:0010090: trichome morphogenesis	2.06E-02
133	GO:0009567: double fertilization forming a zygote and endosperm	2.15E-02
134	GO:0016125: sterol metabolic process	2.15E-02
135	GO:0009735: response to cytokinin	2.24E-02
136	GO:0071805: potassium ion transmembrane transport	2.25E-02
137	GO:0001666: response to hypoxia	2.44E-02
138	GO:0010027: thylakoid membrane organization	2.44E-02
139	GO:0035556: intracellular signal transduction	2.68E-02
140	GO:0015995: chlorophyll biosynthetic process	2.74E-02
141	GO:0016311: dephosphorylation	2.84E-02
142	GO:0042254: ribosome biogenesis	2.93E-02
143	GO:0006468: protein phosphorylation	3.06E-02
144	GO:0006499: N-terminal protein myristoylation	3.16E-02
145	GO:0006811: ion transport	3.16E-02
146	GO:0048527: lateral root development	3.27E-02
147	GO:0009853: photorespiration	3.49E-02
148	GO:0006508: proteolysis	3.53E-02
149	GO:0046777: protein autophosphorylation	3.81E-02
150	GO:0006631: fatty acid metabolic process	3.94E-02
151	GO:0015979: photosynthesis	4.06E-02
152	GO:0009640: photomorphogenesis	4.18E-02
153	GO:0009744: response to sucrose	4.18E-02
154	GO:0006886: intracellular protein transport	4.39E-02
155	GO:0006855: drug transmembrane transport	4.66E-02
156	GO:0007275: multicellular organism development	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
8	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
9	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
10	GO:0045436: lycopene beta cyclase activity	0.00E+00
11	GO:0004506: squalene monooxygenase activity	2.72E-05
12	GO:0005528: FK506 binding	4.10E-05
13	GO:0004332: fructose-bisphosphate aldolase activity	6.48E-05
14	GO:0003867: 4-aminobutyrate transaminase activity	1.91E-04
15	GO:0051777: ent-kaurenoate oxidase activity	1.91E-04
16	GO:0004856: xylulokinase activity	1.91E-04
17	GO:0090422: thiamine pyrophosphate transporter activity	1.91E-04
18	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.78E-04
19	GO:0000064: L-ornithine transmembrane transporter activity	4.29E-04
20	GO:0015929: hexosaminidase activity	4.29E-04
21	GO:0004563: beta-N-acetylhexosaminidase activity	4.29E-04
22	GO:0019172: glyoxalase III activity	4.29E-04
23	GO:0010291: carotene beta-ring hydroxylase activity	4.29E-04
24	GO:0016868: intramolecular transferase activity, phosphotransferases	4.29E-04
25	GO:0005094: Rho GDP-dissociation inhibitor activity	4.29E-04
26	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.29E-04
27	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.29E-04
28	GO:0004565: beta-galactosidase activity	4.93E-04
29	GO:0010428: methyl-CpNpG binding	6.99E-04
30	GO:0002161: aminoacyl-tRNA editing activity	6.99E-04
31	GO:0008253: 5'-nucleotidase activity	6.99E-04
32	GO:0004148: dihydrolipoyl dehydrogenase activity	6.99E-04
33	GO:0004816: asparagine-tRNA ligase activity	6.99E-04
34	GO:0016805: dipeptidase activity	6.99E-04
35	GO:0010429: methyl-CpNpN binding	6.99E-04
36	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	6.99E-04
37	GO:0015462: ATPase-coupled protein transmembrane transporter activity	6.99E-04
38	GO:0004180: carboxypeptidase activity	6.99E-04
39	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.71E-04
40	GO:0004176: ATP-dependent peptidase activity	9.21E-04
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.32E-03
42	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.32E-03
43	GO:0008453: alanine-glyoxylate transaminase activity	1.32E-03
44	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.68E-03
45	GO:0017137: Rab GTPase binding	1.68E-03
46	GO:0042578: phosphoric ester hydrolase activity	2.07E-03
47	GO:0004462: lactoylglutathione lyase activity	2.07E-03
48	GO:2001070: starch binding	2.07E-03
49	GO:0016491: oxidoreductase activity	2.43E-03
50	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.49E-03
51	GO:0004559: alpha-mannosidase activity	2.49E-03
52	GO:0008236: serine-type peptidase activity	3.25E-03
53	GO:0004033: aldo-keto reductase (NADP) activity	3.40E-03
54	GO:0043022: ribosome binding	3.40E-03
55	GO:0005096: GTPase activator activity	3.59E-03
56	GO:0042802: identical protein binding	4.37E-03
57	GO:0004674: protein serine/threonine kinase activity	4.43E-03
58	GO:0005515: protein binding	4.48E-03
59	GO:0035091: phosphatidylinositol binding	6.02E-03
60	GO:0008327: methyl-CpG binding	6.06E-03
61	GO:0016787: hydrolase activity	6.33E-03
62	GO:0000049: tRNA binding	6.66E-03
63	GO:0050660: flavin adenine dinucleotide binding	6.76E-03
64	GO:0008081: phosphoric diester hydrolase activity	7.28E-03
65	GO:0008266: poly(U) RNA binding	7.91E-03
66	GO:0003777: microtubule motor activity	8.31E-03
67	GO:0004190: aspartic-type endopeptidase activity	8.57E-03
68	GO:0005524: ATP binding	9.14E-03
69	GO:0004672: protein kinase activity	1.01E-02
70	GO:0015079: potassium ion transmembrane transporter activity	1.07E-02
71	GO:0033612: receptor serine/threonine kinase binding	1.14E-02
72	GO:0019843: rRNA binding	1.34E-02
73	GO:0018024: histone-lysine N-methyltransferase activity	1.45E-02
74	GO:0004812: aminoacyl-tRNA ligase activity	1.45E-02
75	GO:0004252: serine-type endopeptidase activity	1.49E-02
76	GO:0016301: kinase activity	1.55E-02
77	GO:0050662: coenzyme binding	1.70E-02
78	GO:0048038: quinone binding	1.88E-02
79	GO:0008017: microtubule binding	1.94E-02
80	GO:0051015: actin filament binding	2.06E-02
81	GO:0005215: transporter activity	2.11E-02
82	GO:0008483: transaminase activity	2.25E-02
83	GO:0008237: metallopeptidase activity	2.25E-02
84	GO:0008168: methyltransferase activity	2.77E-02
85	GO:0015238: drug transmembrane transporter activity	3.05E-02
86	GO:0003723: RNA binding	3.11E-02
87	GO:0004222: metalloendopeptidase activity	3.16E-02
88	GO:0050897: cobalt ion binding	3.27E-02
89	GO:0003746: translation elongation factor activity	3.49E-02
90	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.71E-02
91	GO:0042393: histone binding	3.83E-02
92	GO:0004185: serine-type carboxypeptidase activity	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0043233: organelle lumen	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	1.35E-13
5	GO:0009535: chloroplast thylakoid membrane	1.62E-09
6	GO:0009543: chloroplast thylakoid lumen	1.02E-07
7	GO:0009570: chloroplast stroma	2.58E-07
8	GO:0009534: chloroplast thylakoid	1.47E-05
9	GO:0009579: thylakoid	9.88E-05
10	GO:0009344: nitrite reductase complex [NAD(P)H]	1.91E-04
11	GO:0031361: integral component of thylakoid membrane	1.91E-04
12	GO:0009941: chloroplast envelope	4.83E-04
13	GO:0030095: chloroplast photosystem II	5.55E-04
14	GO:0005782: peroxisomal matrix	6.99E-04
15	GO:0033281: TAT protein transport complex	6.99E-04
16	GO:0032432: actin filament bundle	9.97E-04
17	GO:0030660: Golgi-associated vesicle membrane	1.32E-03
18	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.32E-03
19	GO:0030529: intracellular ribonucleoprotein complex	2.63E-03
20	GO:0009533: chloroplast stromal thylakoid	2.93E-03
21	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.40E-03
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.40E-03
23	GO:0008180: COP9 signalosome	4.40E-03
24	GO:0031977: thylakoid lumen	5.13E-03
25	GO:0016324: apical plasma membrane	5.48E-03
26	GO:0005886: plasma membrane	5.77E-03
27	GO:0005765: lysosomal membrane	6.06E-03
28	GO:0005884: actin filament	6.06E-03
29	GO:0048046: apoplast	6.28E-03
30	GO:0031969: chloroplast membrane	7.38E-03
31	GO:0042651: thylakoid membrane	1.07E-02
32	GO:0009654: photosystem II oxygen evolving complex	1.07E-02
33	GO:0009532: plastid stroma	1.14E-02
34	GO:0000775: chromosome, centromeric region	1.21E-02
35	GO:0005871: kinesin complex	1.45E-02
36	GO:0005759: mitochondrial matrix	1.69E-02
37	GO:0019898: extrinsic component of membrane	1.79E-02
38	GO:0009536: plastid	2.46E-02
39	GO:0009505: plant-type cell wall	2.54E-02
40	GO:0019005: SCF ubiquitin ligase complex	2.95E-02
41	GO:0005777: peroxisome	2.97E-02
42	GO:0005874: microtubule	3.44E-02
43	GO:0005743: mitochondrial inner membrane	4.86E-02