co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G58360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045860: positive regulation of protein kinase activity	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:1904526: regulation of microtubule binding	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:0051639: actin filament network formation	5.26E-06
8	GO:0051764: actin crosslink formation	9.95E-06
9	GO:0010480: microsporocyte differentiation	1.06E-04
10	GO:0031338: regulation of vesicle fusion	1.06E-04
11	GO:0010028: xanthophyll cycle	1.06E-04
12	GO:0034757: negative regulation of iron ion transport	1.06E-04
13	GO:0000025: maltose catabolic process	1.06E-04
14	GO:0010271: regulation of chlorophyll catabolic process	2.48E-04
15	GO:0010541: acropetal auxin transport	2.48E-04
16	GO:0016122: xanthophyll metabolic process	2.48E-04
17	GO:0010289: homogalacturonan biosynthetic process	2.48E-04
18	GO:0051262: protein tetramerization	2.48E-04
19	GO:0055129: L-proline biosynthetic process	2.48E-04
20	GO:0010540: basipetal auxin transport	2.49E-04
21	GO:0051017: actin filament bundle assembly	3.49E-04
22	GO:0010160: formation of animal organ boundary	4.12E-04
23	GO:0080117: secondary growth	4.12E-04
24	GO:0090153: regulation of sphingolipid biosynthetic process	4.12E-04
25	GO:0090630: activation of GTPase activity	4.12E-04
26	GO:0080170: hydrogen peroxide transmembrane transport	5.92E-04
27	GO:0043481: anthocyanin accumulation in tissues in response to UV light	5.92E-04
28	GO:0015994: chlorophyll metabolic process	7.86E-04
29	GO:0016120: carotene biosynthetic process	9.92E-04
30	GO:0010438: cellular response to sulfur starvation	9.92E-04
31	GO:0060918: auxin transport	1.21E-03
32	GO:0048831: regulation of shoot system development	1.21E-03
33	GO:0009759: indole glucosinolate biosynthetic process	1.21E-03
34	GO:0006561: proline biosynthetic process	1.21E-03
35	GO:0006751: glutathione catabolic process	1.21E-03
36	GO:0048827: phyllome development	1.21E-03
37	GO:0042549: photosystem II stabilization	1.21E-03
38	GO:0045926: negative regulation of growth	1.45E-03
39	GO:0048509: regulation of meristem development	1.45E-03
40	GO:0048437: floral organ development	1.70E-03
41	GO:0071482: cellular response to light stimulus	2.24E-03
42	GO:0009827: plant-type cell wall modification	2.24E-03
43	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.74E-03
44	GO:0009638: phototropism	2.84E-03
45	GO:0046777: protein autophosphorylation	2.86E-03
46	GO:0006535: cysteine biosynthetic process from serine	3.15E-03
47	GO:0045036: protein targeting to chloroplast	3.15E-03
48	GO:0010215: cellulose microfibril organization	3.15E-03
49	GO:1903507: negative regulation of nucleic acid-templated transcription	3.47E-03
50	GO:0048229: gametophyte development	3.47E-03
51	GO:0046856: phosphatidylinositol dephosphorylation	3.47E-03
52	GO:0006820: anion transport	3.81E-03
53	GO:0005983: starch catabolic process	3.81E-03
54	GO:0002213: defense response to insect	3.81E-03
55	GO:0008361: regulation of cell size	3.81E-03
56	GO:0010102: lateral root morphogenesis	4.16E-03
57	GO:0009785: blue light signaling pathway	4.16E-03
58	GO:0006006: glucose metabolic process	4.16E-03
59	GO:0010229: inflorescence development	4.16E-03
60	GO:0010075: regulation of meristem growth	4.16E-03
61	GO:0009934: regulation of meristem structural organization	4.52E-03
62	GO:0009825: multidimensional cell growth	4.88E-03
63	GO:0018105: peptidyl-serine phosphorylation	4.89E-03
64	GO:0010025: wax biosynthetic process	5.26E-03
65	GO:0006833: water transport	5.26E-03
66	GO:0000162: tryptophan biosynthetic process	5.26E-03
67	GO:0006289: nucleotide-excision repair	5.65E-03
68	GO:0019344: cysteine biosynthetic process	5.65E-03
69	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.87E-03
70	GO:0080092: regulation of pollen tube growth	6.87E-03
71	GO:0071215: cellular response to abscisic acid stimulus	7.30E-03
72	GO:0048443: stamen development	7.74E-03
73	GO:0070417: cellular response to cold	8.19E-03
74	GO:0007623: circadian rhythm	8.20E-03
75	GO:0010228: vegetative to reproductive phase transition of meristem	8.58E-03
76	GO:0034220: ion transmembrane transport	8.64E-03
77	GO:0010087: phloem or xylem histogenesis	8.64E-03
78	GO:0048653: anther development	8.64E-03
79	GO:0009416: response to light stimulus	8.91E-03
80	GO:0045489: pectin biosynthetic process	9.10E-03
81	GO:0009958: positive gravitropism	9.10E-03
82	GO:0006662: glycerol ether metabolic process	9.10E-03
83	GO:0009791: post-embryonic development	1.01E-02
84	GO:0048825: cotyledon development	1.01E-02
85	GO:0071554: cell wall organization or biogenesis	1.06E-02
86	GO:1901657: glycosyl compound metabolic process	1.16E-02
87	GO:0055085: transmembrane transport	1.21E-02
88	GO:0009639: response to red or far red light	1.21E-02
89	GO:0071805: potassium ion transmembrane transport	1.26E-02
90	GO:0009911: positive regulation of flower development	1.37E-02
91	GO:0006970: response to osmotic stress	1.37E-02
92	GO:0010027: thylakoid membrane organization	1.37E-02
93	GO:0010029: regulation of seed germination	1.42E-02
94	GO:0009816: defense response to bacterium, incompatible interaction	1.42E-02
95	GO:0006468: protein phosphorylation	1.54E-02
96	GO:0030244: cellulose biosynthetic process	1.65E-02
97	GO:0009737: response to abscisic acid	1.66E-02
98	GO:0000160: phosphorelay signal transduction system	1.71E-02
99	GO:0010218: response to far red light	1.77E-02
100	GO:0009834: plant-type secondary cell wall biogenesis	1.77E-02
101	GO:0048527: lateral root development	1.83E-02
102	GO:0016051: carbohydrate biosynthetic process	1.95E-02
103	GO:0009637: response to blue light	1.95E-02
104	GO:0034599: cellular response to oxidative stress	2.02E-02
105	GO:0006869: lipid transport	2.07E-02
106	GO:0009414: response to water deprivation	2.11E-02
107	GO:0006631: fatty acid metabolic process	2.21E-02
108	GO:0006629: lipid metabolic process	2.33E-02
109	GO:0009640: photomorphogenesis	2.34E-02
110	GO:0009926: auxin polar transport	2.34E-02
111	GO:0009636: response to toxic substance	2.54E-02
112	GO:0031347: regulation of defense response	2.68E-02
113	GO:0042538: hyperosmotic salinity response	2.75E-02
114	GO:0006364: rRNA processing	2.89E-02
115	GO:0006813: potassium ion transport	2.89E-02
116	GO:0009736: cytokinin-activated signaling pathway	2.89E-02
117	GO:0009909: regulation of flower development	3.11E-02
118	GO:0009651: response to salt stress	3.24E-02
119	GO:0005975: carbohydrate metabolic process	3.66E-02
120	GO:0009908: flower development	3.74E-02
121	GO:0009555: pollen development	4.13E-02
122	GO:0035556: intracellular signal transduction	4.35E-02
123	GO:0042744: hydrogen peroxide catabolic process	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
3	GO:0004676: 3-phosphoinositide-dependent protein kinase activity	0.00E+00
4	GO:0004349: glutamate 5-kinase activity	1.06E-04
5	GO:0004350: glutamate-5-semialdehyde dehydrogenase activity	1.06E-04
6	GO:0004134: 4-alpha-glucanotransferase activity	1.06E-04
7	GO:0008158: hedgehog receptor activity	1.06E-04
8	GO:0030941: chloroplast targeting sequence binding	1.06E-04
9	GO:0050139: nicotinate-N-glucosyltransferase activity	1.06E-04
10	GO:0005227: calcium activated cation channel activity	1.06E-04
11	GO:0008081: phosphoric diester hydrolase activity	2.19E-04
12	GO:0009884: cytokinin receptor activity	2.48E-04
13	GO:0050017: L-3-cyanoalanine synthase activity	2.48E-04
14	GO:0003839: gamma-glutamylcyclotransferase activity	2.48E-04
15	GO:0005034: osmosensor activity	4.12E-04
16	GO:0004445: inositol-polyphosphate 5-phosphatase activity	5.92E-04
17	GO:0019201: nucleotide kinase activity	5.92E-04
18	GO:0070628: proteasome binding	7.86E-04
19	GO:0008526: phosphatidylinositol transporter activity	7.86E-04
20	GO:0051861: glycolipid binding	7.86E-04
21	GO:0051015: actin filament binding	9.50E-04
22	GO:0017137: Rab GTPase binding	9.92E-04
23	GO:0008381: mechanically-gated ion channel activity	9.92E-04
24	GO:0016413: O-acetyltransferase activity	1.13E-03
25	GO:0042578: phosphoric ester hydrolase activity	1.21E-03
26	GO:0031593: polyubiquitin binding	1.21E-03
27	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.21E-03
28	GO:0070300: phosphatidic acid binding	1.45E-03
29	GO:0005261: cation channel activity	1.45E-03
30	GO:0004017: adenylate kinase activity	1.45E-03
31	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.45E-03
32	GO:0019900: kinase binding	1.45E-03
33	GO:0004124: cysteine synthase activity	1.45E-03
34	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.56E-03
35	GO:0016301: kinase activity	1.62E-03
36	GO:0004033: aldo-keto reductase (NADP) activity	1.97E-03
37	GO:0043022: ribosome binding	1.97E-03
38	GO:0035091: phosphatidylinositol binding	2.70E-03
39	GO:0004673: protein histidine kinase activity	3.15E-03
40	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.47E-03
41	GO:0004871: signal transducer activity	3.50E-03
42	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.81E-03
43	GO:0004565: beta-galactosidase activity	4.16E-03
44	GO:0010329: auxin efflux transmembrane transporter activity	4.16E-03
45	GO:0000155: phosphorelay sensor kinase activity	4.16E-03
46	GO:0003714: transcription corepressor activity	5.65E-03
47	GO:0043130: ubiquitin binding	5.65E-03
48	GO:0005528: FK506 binding	5.65E-03
49	GO:0015079: potassium ion transmembrane transporter activity	6.05E-03
50	GO:0043424: protein histidine kinase binding	6.05E-03
51	GO:0004674: protein serine/threonine kinase activity	6.42E-03
52	GO:0033612: receptor serine/threonine kinase binding	6.46E-03
53	GO:0019706: protein-cysteine S-palmitoyltransferase activity	6.46E-03
54	GO:0005524: ATP binding	6.73E-03
55	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	6.87E-03
56	GO:0047134: protein-disulfide reductase activity	8.19E-03
57	GO:0004672: protein kinase activity	9.47E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	9.58E-03
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.16E-02
60	GO:0003684: damaged DNA binding	1.21E-02
61	GO:0015250: water channel activity	1.37E-02
62	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.48E-02
63	GO:0004721: phosphoprotein phosphatase activity	1.54E-02
64	GO:0004683: calmodulin-dependent protein kinase activity	1.54E-02
65	GO:0102483: scopolin beta-glucosidase activity	1.54E-02
66	GO:0016787: hydrolase activity	1.67E-02
67	GO:0005096: GTPase activator activity	1.71E-02
68	GO:0008422: beta-glucosidase activity	2.08E-02
69	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.61E-02
70	GO:0016298: lipase activity	2.97E-02
71	GO:0031625: ubiquitin protein ligase binding	3.11E-02
72	GO:0008234: cysteine-type peptidase activity	3.11E-02
73	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.49E-02
74	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.49E-02
75	GO:0003779: actin binding	3.64E-02
76	GO:0015035: protein disulfide oxidoreductase activity	3.80E-02
77	GO:0004252: serine-type endopeptidase activity	4.70E-02
78	GO:0030170: pyridoxal phosphate binding	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0009930: longitudinal side of cell surface	0.00E+00
2	GO:0005886: plasma membrane	1.14E-08
3	GO:0032432: actin filament bundle	5.26E-06
4	GO:0005884: actin filament	1.65E-04
5	GO:0009897: external side of plasma membrane	4.12E-04
6	GO:0048188: Set1C/COMPASS complex	4.12E-04
7	GO:0016328: lateral plasma membrane	4.12E-04
8	GO:0031359: integral component of chloroplast outer membrane	1.70E-03
9	GO:0009505: plant-type cell wall	1.82E-03
10	GO:0009507: chloroplast	1.95E-03
11	GO:0009501: amyloplast	1.97E-03
12	GO:0005773: vacuole	2.37E-03
13	GO:0030659: cytoplasmic vesicle membrane	4.52E-03
14	GO:0030095: chloroplast photosystem II	4.52E-03
15	GO:0010287: plastoglobule	5.63E-03
16	GO:0016021: integral component of membrane	5.76E-03
17	GO:0009543: chloroplast thylakoid lumen	5.94E-03
18	GO:0009506: plasmodesma	6.40E-03
19	GO:0005770: late endosome	9.10E-03
20	GO:0009570: chloroplast stroma	1.12E-02
21	GO:0031969: chloroplast membrane	1.58E-02
22	GO:0009707: chloroplast outer membrane	1.65E-02
23	GO:0005622: intracellular	1.85E-02
24	GO:0031977: thylakoid lumen	2.21E-02
25	GO:0005834: heterotrimeric G-protein complex	3.41E-02
26	GO:0012505: endomembrane system	3.64E-02
27	GO:0009534: chloroplast thylakoid	4.97E-02