Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G58290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0019323: pentose catabolic process0.00E+00
3GO:2000121: regulation of removal of superoxide radicals0.00E+00
4GO:0016553: base conversion or substitution editing0.00E+00
5GO:0006642: triglyceride mobilization0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
8GO:0042820: vitamin B6 catabolic process0.00E+00
9GO:0018023: peptidyl-lysine trimethylation0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0015995: chlorophyll biosynthetic process2.71E-13
12GO:0015979: photosynthesis8.20E-10
13GO:0090391: granum assembly5.89E-08
14GO:0010207: photosystem II assembly8.16E-08
15GO:0010027: thylakoid membrane organization2.95E-07
16GO:0009658: chloroplast organization3.76E-07
17GO:0006412: translation9.66E-06
18GO:0032544: plastid translation2.08E-05
19GO:0010206: photosystem II repair2.86E-05
20GO:0009735: response to cytokinin2.92E-05
21GO:0042254: ribosome biogenesis4.07E-05
22GO:0009052: pentose-phosphate shunt, non-oxidative branch5.04E-05
23GO:2001141: regulation of RNA biosynthetic process5.04E-05
24GO:0009773: photosynthetic electron transport in photosystem I6.23E-05
25GO:0006546: glycine catabolic process8.90E-05
26GO:0019253: reductive pentose-phosphate cycle1.14E-04
27GO:0010019: chloroplast-nucleus signaling pathway2.69E-04
28GO:0034599: cellular response to oxidative stress2.90E-04
29GO:0010196: nonphotochemical quenching3.47E-04
30GO:0071588: hydrogen peroxide mediated signaling pathway3.84E-04
31GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.84E-04
32GO:0060627: regulation of vesicle-mediated transport3.84E-04
33GO:0009443: pyridoxal 5'-phosphate salvage3.84E-04
34GO:0046467: membrane lipid biosynthetic process3.84E-04
35GO:0043489: RNA stabilization3.84E-04
36GO:0044262: cellular carbohydrate metabolic process3.84E-04
37GO:1904966: positive regulation of vitamin E biosynthetic process3.84E-04
38GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.84E-04
39GO:1904964: positive regulation of phytol biosynthetic process3.84E-04
40GO:0071461: cellular response to redox state3.84E-04
41GO:1902458: positive regulation of stomatal opening3.84E-04
42GO:0034337: RNA folding3.84E-04
43GO:0016117: carotenoid biosynthetic process3.86E-04
44GO:0000413: protein peptidyl-prolyl isomerization4.27E-04
45GO:0071482: cellular response to light stimulus5.32E-04
46GO:0010275: NAD(P)H dehydrogenase complex assembly8.33E-04
47GO:0010198: synergid death8.33E-04
48GO:1902326: positive regulation of chlorophyll biosynthetic process8.33E-04
49GO:0080005: photosystem stoichiometry adjustment8.33E-04
50GO:0018026: peptidyl-lysine monomethylation8.33E-04
51GO:1903426: regulation of reactive oxygen species biosynthetic process8.33E-04
52GO:0030388: fructose 1,6-bisphosphate metabolic process8.33E-04
53GO:0019684: photosynthesis, light reaction1.01E-03
54GO:0006352: DNA-templated transcription, initiation1.01E-03
55GO:0006094: gluconeogenesis1.31E-03
56GO:0006000: fructose metabolic process1.35E-03
57GO:0019563: glycerol catabolic process1.35E-03
58GO:0006518: peptide metabolic process1.35E-03
59GO:0032504: multicellular organism reproduction1.35E-03
60GO:0055114: oxidation-reduction process1.72E-03
61GO:0009152: purine ribonucleotide biosynthetic process1.95E-03
62GO:0046653: tetrahydrofolate metabolic process1.95E-03
63GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.95E-03
64GO:0010731: protein glutathionylation1.95E-03
65GO:0050482: arachidonic acid secretion1.95E-03
66GO:0071484: cellular response to light intensity1.95E-03
67GO:0019464: glycine decarboxylation via glycine cleavage system2.62E-03
68GO:0009765: photosynthesis, light harvesting2.62E-03
69GO:2000122: negative regulation of stomatal complex development2.62E-03
70GO:0006021: inositol biosynthetic process2.62E-03
71GO:0010037: response to carbon dioxide2.62E-03
72GO:0015976: carbon utilization2.62E-03
73GO:0034052: positive regulation of plant-type hypersensitive response3.35E-03
74GO:0016120: carotene biosynthetic process3.35E-03
75GO:0045038: protein import into chloroplast thylakoid membrane3.35E-03
76GO:0031365: N-terminal protein amino acid modification3.35E-03
77GO:0016123: xanthophyll biosynthetic process3.35E-03
78GO:0042335: cuticle development3.75E-03
79GO:0006655: phosphatidylglycerol biosynthetic process4.14E-03
80GO:0010190: cytochrome b6f complex assembly4.14E-03
81GO:0018258: protein O-linked glycosylation via hydroxyproline4.14E-03
82GO:0046855: inositol phosphate dephosphorylation4.14E-03
83GO:0010405: arabinogalactan protein metabolic process4.14E-03
84GO:0071470: cellular response to osmotic stress4.99E-03
85GO:0042372: phylloquinone biosynthetic process4.99E-03
86GO:1901259: chloroplast rRNA processing4.99E-03
87GO:0010189: vitamin E biosynthetic process4.99E-03
88GO:0010555: response to mannitol4.99E-03
89GO:0000302: response to reactive oxygen species5.00E-03
90GO:0010098: suspensor development5.89E-03
91GO:0006400: tRNA modification5.89E-03
92GO:0009395: phospholipid catabolic process5.89E-03
93GO:0048564: photosystem I assembly6.85E-03
94GO:0009819: drought recovery6.85E-03
95GO:0009642: response to light intensity6.85E-03
96GO:0043068: positive regulation of programmed cell death6.85E-03
97GO:0009704: de-etiolation6.85E-03
98GO:2000070: regulation of response to water deprivation6.85E-03
99GO:0006644: phospholipid metabolic process6.85E-03
100GO:0080167: response to karrikin6.87E-03
101GO:0009409: response to cold6.90E-03
102GO:0006002: fructose 6-phosphate metabolic process7.86E-03
103GO:0015996: chlorophyll catabolic process7.86E-03
104GO:0007186: G-protein coupled receptor signaling pathway7.86E-03
105GO:0017004: cytochrome complex assembly7.86E-03
106GO:0010411: xyloglucan metabolic process8.53E-03
107GO:0006783: heme biosynthetic process8.92E-03
108GO:0006754: ATP biosynthetic process8.92E-03
109GO:0000373: Group II intron splicing8.92E-03
110GO:0048589: developmental growth8.92E-03
111GO:0045454: cell redox homeostasis9.03E-03
112GO:0009817: defense response to fungus, incompatible interaction9.46E-03
113GO:0018298: protein-chromophore linkage9.46E-03
114GO:0010205: photoinhibition1.00E-02
115GO:0006633: fatty acid biosynthetic process1.05E-02
116GO:0042742: defense response to bacterium1.06E-02
117GO:0009631: cold acclimation1.10E-02
118GO:0006782: protoporphyrinogen IX biosynthetic process1.12E-02
119GO:0006949: syncytium formation1.12E-02
120GO:0009637: response to blue light1.20E-02
121GO:0009451: RNA modification1.22E-02
122GO:0009089: lysine biosynthetic process via diaminopimelate1.24E-02
123GO:0006415: translational termination1.24E-02
124GO:0018119: peptidyl-cysteine S-nitrosylation1.24E-02
125GO:0006790: sulfur compound metabolic process1.37E-02
126GO:0030001: metal ion transport1.37E-02
127GO:0016024: CDP-diacylglycerol biosynthetic process1.37E-02
128GO:0045037: protein import into chloroplast stroma1.37E-02
129GO:0005986: sucrose biosynthetic process1.49E-02
130GO:0010628: positive regulation of gene expression1.49E-02
131GO:0006006: glucose metabolic process1.49E-02
132GO:0009725: response to hormone1.49E-02
133GO:0009767: photosynthetic electron transport chain1.49E-02
134GO:0010114: response to red light1.55E-02
135GO:0042546: cell wall biogenesis1.62E-02
136GO:0010020: chloroplast fission1.63E-02
137GO:0010167: response to nitrate1.77E-02
138GO:0019853: L-ascorbic acid biosynthetic process1.77E-02
139GO:0046854: phosphatidylinositol phosphorylation1.77E-02
140GO:0006636: unsaturated fatty acid biosynthetic process1.91E-02
141GO:0000027: ribosomal large subunit assembly2.05E-02
142GO:0007010: cytoskeleton organization2.05E-02
143GO:0019344: cysteine biosynthetic process2.05E-02
144GO:0019953: sexual reproduction2.20E-02
145GO:0009768: photosynthesis, light harvesting in photosystem I2.20E-02
146GO:0006417: regulation of translation2.32E-02
147GO:0016998: cell wall macromolecule catabolic process2.36E-02
148GO:0048511: rhythmic process2.36E-02
149GO:0005975: carbohydrate metabolic process2.36E-02
150GO:0006096: glycolytic process2.48E-02
151GO:0009814: defense response, incompatible interaction2.51E-02
152GO:0016226: iron-sulfur cluster assembly2.51E-02
153GO:0006012: galactose metabolic process2.67E-02
154GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.81E-02
155GO:0009306: protein secretion2.84E-02
156GO:0071555: cell wall organization3.02E-02
157GO:0080022: primary root development3.18E-02
158GO:0010182: sugar mediated signaling pathway3.35E-02
159GO:0042752: regulation of circadian rhythm3.53E-02
160GO:0019252: starch biosynthetic process3.71E-02
161GO:0006869: lipid transport3.78E-02
162GO:0002229: defense response to oomycetes3.89E-02
163GO:0006457: protein folding4.25E-02
164GO:0042744: hydrogen peroxide catabolic process4.25E-02
165GO:0009790: embryo development4.36E-02
166GO:0009828: plant-type cell wall loosening4.46E-02
167GO:0006397: mRNA processing4.60E-02
RankGO TermAdjusted P value
1GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
7GO:0045550: geranylgeranyl reductase activity0.00E+00
8GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
9GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
13GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
14GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
15GO:0046408: chlorophyll synthetase activity0.00E+00
16GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
17GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
18GO:0019843: rRNA binding6.47E-10
19GO:0051920: peroxiredoxin activity5.43E-08
20GO:0016209: antioxidant activity1.92E-07
21GO:0016851: magnesium chelatase activity2.84E-07
22GO:0003735: structural constituent of ribosome3.72E-06
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.10E-06
24GO:0016987: sigma factor activity8.90E-05
25GO:0052793: pectin acetylesterase activity8.90E-05
26GO:0001053: plastid sigma factor activity8.90E-05
27GO:0005528: FK506 binding1.84E-04
28GO:0004130: cytochrome-c peroxidase activity1.99E-04
29GO:0004560: alpha-L-fucosidase activity3.84E-04
30GO:0004807: triose-phosphate isomerase activity3.84E-04
31GO:0004853: uroporphyrinogen decarboxylase activity3.84E-04
32GO:0045485: omega-6 fatty acid desaturase activity3.84E-04
33GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.84E-04
34GO:0004328: formamidase activity3.84E-04
35GO:0010347: L-galactose-1-phosphate phosphatase activity3.84E-04
36GO:0052832: inositol monophosphate 3-phosphatase activity8.33E-04
37GO:0004750: ribulose-phosphate 3-epimerase activity8.33E-04
38GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.33E-04
39GO:0016630: protochlorophyllide reductase activity8.33E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity8.33E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity8.33E-04
42GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.33E-04
43GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.33E-04
44GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.33E-04
45GO:0004047: aminomethyltransferase activity8.33E-04
46GO:0004601: peroxidase activity1.14E-03
47GO:0031072: heat shock protein binding1.31E-03
48GO:0010277: chlorophyllide a oxygenase [overall] activity1.35E-03
49GO:0004148: dihydrolipoyl dehydrogenase activity1.35E-03
50GO:0004751: ribose-5-phosphate isomerase activity1.35E-03
51GO:0045174: glutathione dehydrogenase (ascorbate) activity1.35E-03
52GO:0030267: glyoxylate reductase (NADP) activity1.35E-03
53GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.35E-03
54GO:0070402: NADPH binding1.35E-03
55GO:0008864: formyltetrahydrofolate deformylase activity1.35E-03
56GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.35E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity1.95E-03
58GO:0016149: translation release factor activity, codon specific1.95E-03
59GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.95E-03
60GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.95E-03
61GO:0043023: ribosomal large subunit binding1.95E-03
62GO:0004045: aminoacyl-tRNA hydrolase activity2.62E-03
63GO:1990137: plant seed peroxidase activity2.62E-03
64GO:0043495: protein anchor2.62E-03
65GO:0016279: protein-lysine N-methyltransferase activity2.62E-03
66GO:0005509: calcium ion binding3.00E-03
67GO:0003959: NADPH dehydrogenase activity3.35E-03
68GO:0004623: phospholipase A2 activity3.35E-03
69GO:1990714: hydroxyproline O-galactosyltransferase activity4.14E-03
70GO:0016208: AMP binding4.14E-03
71GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.14E-03
72GO:0042578: phosphoric ester hydrolase activity4.14E-03
73GO:0016688: L-ascorbate peroxidase activity4.14E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.99E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.99E-03
76GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.99E-03
77GO:0016762: xyloglucan:xyloglucosyl transferase activity5.00E-03
78GO:0016788: hydrolase activity, acting on ester bonds5.09E-03
79GO:0008235: metalloexopeptidase activity5.89E-03
80GO:0019899: enzyme binding5.89E-03
81GO:0004034: aldose 1-epimerase activity6.85E-03
82GO:0052747: sinapyl alcohol dehydrogenase activity6.85E-03
83GO:0004033: aldo-keto reductase (NADP) activity6.85E-03
84GO:0016168: chlorophyll binding7.65E-03
85GO:0052689: carboxylic ester hydrolase activity8.00E-03
86GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen8.11E-03
87GO:0016798: hydrolase activity, acting on glycosyl bonds8.53E-03
88GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism8.92E-03
89GO:0003747: translation release factor activity8.92E-03
90GO:0008236: serine-type peptidase activity8.99E-03
91GO:0004222: metalloendopeptidase activity1.04E-02
92GO:0004177: aminopeptidase activity1.24E-02
93GO:0047372: acylglycerol lipase activity1.24E-02
94GO:0051539: 4 iron, 4 sulfur cluster binding1.37E-02
95GO:0045551: cinnamyl-alcohol dehydrogenase activity1.37E-02
96GO:0009982: pseudouridine synthase activity1.49E-02
97GO:0004364: glutathione transferase activity1.49E-02
98GO:0004089: carbonate dehydratase activity1.49E-02
99GO:0008266: poly(U) RNA binding1.63E-02
100GO:0051537: 2 iron, 2 sulfur cluster binding1.68E-02
101GO:0016491: oxidoreductase activity1.81E-02
102GO:0031409: pigment binding1.91E-02
103GO:0008289: lipid binding2.04E-02
104GO:0051536: iron-sulfur cluster binding2.05E-02
105GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.10E-02
106GO:0043424: protein histidine kinase binding2.20E-02
107GO:0030570: pectate lyase activity2.67E-02
108GO:0022891: substrate-specific transmembrane transporter activity2.67E-02
109GO:0003756: protein disulfide isomerase activity2.84E-02
110GO:0051082: unfolded protein binding2.99E-02
111GO:0003723: RNA binding3.11E-02
112GO:0003713: transcription coactivator activity3.35E-02
113GO:0016853: isomerase activity3.53E-02
114GO:0004872: receptor activity3.71E-02
115GO:0046872: metal ion binding3.76E-02
116GO:0008483: transaminase activity4.66E-02
117GO:0008237: metallopeptidase activity4.66E-02
118GO:0005200: structural constituent of cytoskeleton4.66E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009507: chloroplast3.55E-69
4GO:0009570: chloroplast stroma1.86E-42
5GO:0009535: chloroplast thylakoid membrane2.60E-39
6GO:0009941: chloroplast envelope9.01E-34
7GO:0009579: thylakoid2.15E-33
8GO:0009534: chloroplast thylakoid7.18E-32
9GO:0009543: chloroplast thylakoid lumen6.06E-27
10GO:0031977: thylakoid lumen1.77E-20
11GO:0010007: magnesium chelatase complex5.89E-08
12GO:0030095: chloroplast photosystem II8.16E-08
13GO:0009654: photosystem II oxygen evolving complex2.89E-07
14GO:0048046: apoplast9.87E-07
15GO:0019898: extrinsic component of membrane2.28E-06
16GO:0005840: ribosome4.37E-06
17GO:0031969: chloroplast membrane9.39E-06
18GO:0009706: chloroplast inner membrane2.12E-05
19GO:0010319: stromule9.07E-05
20GO:0042651: thylakoid membrane2.12E-04
21GO:0009533: chloroplast stromal thylakoid3.47E-04
22GO:0009344: nitrite reductase complex [NAD(P)H]3.84E-04
23GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.38E-04
24GO:0030529: intracellular ribonucleoprotein complex9.84E-04
25GO:0000311: plastid large ribosomal subunit1.15E-03
26GO:0009528: plastid inner membrane1.35E-03
27GO:0005960: glycine cleavage complex1.95E-03
28GO:0009505: plant-type cell wall2.00E-03
29GO:0009532: plastid stroma2.47E-03
30GO:0009527: plastid outer membrane2.62E-03
31GO:0046658: anchored component of plasma membrane3.90E-03
32GO:0009523: photosystem II4.67E-03
33GO:0031225: anchored component of membrane6.41E-03
34GO:0009538: photosystem I reaction center6.85E-03
35GO:0010287: plastoglobule7.31E-03
36GO:0005811: lipid particle7.86E-03
37GO:0022626: cytosolic ribosome8.37E-03
38GO:0009707: chloroplast outer membrane9.46E-03
39GO:0016020: membrane1.04E-02
40GO:0005618: cell wall1.26E-02
41GO:0032040: small-subunit processome1.37E-02
42GO:0009536: plastid1.58E-02
43GO:0030076: light-harvesting complex1.77E-02
44GO:0015935: small ribosomal subunit2.36E-02
45GO:0031410: cytoplasmic vesicle2.51E-02
46GO:0009522: photosystem I3.53E-02
47GO:0016021: integral component of membrane3.55E-02
48GO:0005778: peroxisomal membrane4.66E-02
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Gene type



Gene DE type