co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G57770

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0090042: tubulin deacetylation	0.00E+00
5	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:0000372: Group I intron splicing	0.00E+00
8	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
9	GO:0015994: chlorophyll metabolic process	4.86E-08
10	GO:0016122: xanthophyll metabolic process	8.43E-07
11	GO:0006000: fructose metabolic process	3.17E-06
12	GO:0009773: photosynthetic electron transport in photosystem I	4.91E-06
13	GO:0006094: gluconeogenesis	7.92E-06
14	GO:0006002: fructose 6-phosphate metabolic process	1.07E-04
15	GO:0071482: cellular response to light stimulus	1.07E-04
16	GO:0043609: regulation of carbon utilization	1.30E-04
17	GO:0010028: xanthophyll cycle	1.30E-04
18	GO:0034337: RNA folding	1.30E-04
19	GO:0000305: response to oxygen radical	1.30E-04
20	GO:0019646: aerobic electron transport chain	1.30E-04
21	GO:0043953: protein transport by the Tat complex	1.30E-04
22	GO:0000476: maturation of 4.5S rRNA	1.30E-04
23	GO:0000967: rRNA 5'-end processing	1.30E-04
24	GO:0010480: microsporocyte differentiation	1.30E-04
25	GO:0000481: maturation of 5S rRNA	1.30E-04
26	GO:0065002: intracellular protein transmembrane transport	1.30E-04
27	GO:0048507: meristem development	1.31E-04
28	GO:0010206: photosystem II repair	1.31E-04
29	GO:0000373: Group II intron splicing	1.31E-04
30	GO:0010205: photoinhibition	1.58E-04
31	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.99E-04
32	GO:0034470: ncRNA processing	2.99E-04
33	GO:0009915: phloem sucrose loading	2.99E-04
34	GO:0034755: iron ion transmembrane transport	2.99E-04
35	GO:1900871: chloroplast mRNA modification	2.99E-04
36	GO:0010207: photosystem II assembly	3.27E-04
37	GO:0006364: rRNA processing	5.31E-04
38	GO:0006096: glycolytic process	6.55E-04
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.04E-04
40	GO:0010109: regulation of photosynthesis	9.34E-04
41	GO:0045727: positive regulation of translation	9.34E-04
42	GO:0006749: glutathione metabolic process	9.34E-04
43	GO:0007094: mitotic spindle assembly checkpoint	1.18E-03
44	GO:0030163: protein catabolic process	1.23E-03
45	GO:0055114: oxidation-reduction process	1.41E-03
46	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.45E-03
47	GO:0042549: photosystem II stabilization	1.45E-03
48	GO:0000470: maturation of LSU-rRNA	1.45E-03
49	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.45E-03
50	GO:0016126: sterol biosynthetic process	1.55E-03
51	GO:0009854: oxidative photosynthetic carbon pathway	1.73E-03
52	GO:0010067: procambium histogenesis	1.73E-03
53	GO:0042372: phylloquinone biosynthetic process	1.73E-03
54	GO:0009942: longitudinal axis specification	1.73E-03
55	GO:0010189: vitamin E biosynthetic process	1.73E-03
56	GO:0048437: floral organ development	2.04E-03
57	GO:0010492: maintenance of shoot apical meristem identity	2.36E-03
58	GO:0048564: photosystem I assembly	2.36E-03
59	GO:0006605: protein targeting	2.36E-03
60	GO:0032508: DNA duplex unwinding	2.36E-03
61	GO:0009735: response to cytokinin	2.39E-03
62	GO:0009853: photorespiration	2.54E-03
63	GO:0032544: plastid translation	2.69E-03
64	GO:0006631: fatty acid metabolic process	3.00E-03
65	GO:0006098: pentose-phosphate shunt	3.04E-03
66	GO:0006779: porphyrin-containing compound biosynthetic process	3.41E-03
67	GO:0006782: protoporphyrinogen IX biosynthetic process	3.79E-03
68	GO:0006810: transport	3.89E-03
69	GO:0006879: cellular iron ion homeostasis	4.18E-03
70	GO:0009750: response to fructose	4.18E-03
71	GO:0048229: gametophyte development	4.18E-03
72	GO:0005983: starch catabolic process	4.58E-03
73	GO:0018107: peptidyl-threonine phosphorylation	5.00E-03
74	GO:0010075: regulation of meristem growth	5.00E-03
75	GO:0009767: photosynthetic electron transport chain	5.00E-03
76	GO:0005986: sucrose biosynthetic process	5.00E-03
77	GO:0009266: response to temperature stimulus	5.44E-03
78	GO:0009934: regulation of meristem structural organization	5.44E-03
79	GO:0010223: secondary shoot formation	5.44E-03
80	GO:0006636: unsaturated fatty acid biosynthetic process	6.34E-03
81	GO:0016575: histone deacetylation	7.30E-03
82	GO:0006418: tRNA aminoacylation for protein translation	7.30E-03
83	GO:0061077: chaperone-mediated protein folding	7.79E-03
84	GO:0051321: meiotic cell cycle	7.79E-03
85	GO:0006979: response to oxidative stress	8.10E-03
86	GO:0001944: vasculature development	8.82E-03
87	GO:0010089: xylem development	9.35E-03
88	GO:0048653: anther development	1.04E-02
89	GO:0042631: cellular response to water deprivation	1.04E-02
90	GO:0010051: xylem and phloem pattern formation	1.04E-02
91	GO:0009451: RNA modification	1.10E-02
92	GO:0010305: leaf vascular tissue pattern formation	1.10E-02
93	GO:0007059: chromosome segregation	1.16E-02
94	GO:0009646: response to absence of light	1.16E-02
95	GO:0016032: viral process	1.34E-02
96	GO:0010090: trichome morphogenesis	1.40E-02
97	GO:0009567: double fertilization forming a zygote and endosperm	1.46E-02
98	GO:0005975: carbohydrate metabolic process	1.50E-02
99	GO:0071805: potassium ion transmembrane transport	1.53E-02
100	GO:0001666: response to hypoxia	1.66E-02
101	GO:0010027: thylakoid membrane organization	1.66E-02
102	GO:0009658: chloroplast organization	1.67E-02
103	GO:0042254: ribosome biogenesis	1.70E-02
104	GO:0015995: chlorophyll biosynthetic process	1.86E-02
105	GO:0016311: dephosphorylation	1.93E-02
106	GO:0048481: plant ovule development	2.00E-02
107	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.14E-02
108	GO:0006499: N-terminal protein myristoylation	2.15E-02
109	GO:0015979: photosynthesis	2.37E-02
110	GO:0045454: cell redox homeostasis	2.48E-02
111	GO:0006839: mitochondrial transport	2.60E-02
112	GO:0009644: response to high light intensity	3.00E-02
113	GO:0009408: response to heat	3.06E-02
114	GO:0006855: drug transmembrane transport	3.17E-02
115	GO:0006397: mRNA processing	3.19E-02
116	GO:0031347: regulation of defense response	3.25E-02
117	GO:0009585: red, far-red light phototransduction	3.51E-02
118	GO:0006813: potassium ion transport	3.51E-02
119	GO:0018105: peptidyl-serine phosphorylation	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0008465: glycerate dehydrogenase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0051721: protein phosphatase 2A binding	0.00E+00
6	GO:0009976: tocopherol cyclase activity	0.00E+00
7	GO:0042903: tubulin deacetylase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
11	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
12	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
13	GO:0043014: alpha-tubulin binding	0.00E+00
14	GO:0005528: FK506 binding	2.82E-07
15	GO:0004506: squalene monooxygenase activity	1.40E-05
16	GO:0004332: fructose-bisphosphate aldolase activity	3.44E-05
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.44E-05
18	GO:0045485: omega-6 fatty acid desaturase activity	1.30E-04
19	GO:0004856: xylulokinase activity	1.30E-04
20	GO:0004362: glutathione-disulfide reductase activity	2.99E-04
21	GO:0047746: chlorophyllase activity	2.99E-04
22	GO:0016868: intramolecular transferase activity, phosphotransferases	2.99E-04
23	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.99E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.99E-04
25	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.99E-04
26	GO:0019172: glyoxalase III activity	2.99E-04
27	GO:0008266: poly(U) RNA binding	3.27E-04
28	GO:0015462: ATPase-coupled protein transmembrane transporter activity	4.92E-04
29	GO:0002161: aminoacyl-tRNA editing activity	4.92E-04
30	GO:0008253: 5'-nucleotidase activity	4.92E-04
31	GO:0004148: dihydrolipoyl dehydrogenase activity	4.92E-04
32	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.92E-04
33	GO:0050660: flavin adenine dinucleotide binding	5.78E-04
34	GO:0016787: hydrolase activity	5.98E-04
35	GO:0048487: beta-tubulin binding	7.04E-04
36	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.34E-04
37	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	9.34E-04
38	GO:0008453: alanine-glyoxylate transaminase activity	9.34E-04
39	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.18E-03
40	GO:0003723: RNA binding	1.24E-03
41	GO:2001070: starch binding	1.45E-03
42	GO:0042578: phosphoric ester hydrolase activity	1.45E-03
43	GO:0004462: lactoylglutathione lyase activity	1.45E-03
44	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.73E-03
45	GO:0004602: glutathione peroxidase activity	1.73E-03
46	GO:0043022: ribosome binding	2.36E-03
47	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.69E-03
48	GO:0005381: iron ion transmembrane transporter activity	3.41E-03
49	GO:0000049: tRNA binding	4.58E-03
50	GO:0031072: heat shock protein binding	5.00E-03
51	GO:0003954: NADH dehydrogenase activity	6.81E-03
52	GO:0004407: histone deacetylase activity	6.81E-03
53	GO:0015079: potassium ion transmembrane transporter activity	7.30E-03
54	GO:0004176: ATP-dependent peptidase activity	7.79E-03
55	GO:0033612: receptor serine/threonine kinase binding	7.79E-03
56	GO:0019843: rRNA binding	7.79E-03
57	GO:0005524: ATP binding	8.56E-03
58	GO:0004812: aminoacyl-tRNA ligase activity	9.90E-03
59	GO:0016853: isomerase activity	1.16E-02
60	GO:0050662: coenzyme binding	1.16E-02
61	GO:0016491: oxidoreductase activity	1.21E-02
62	GO:0048038: quinone binding	1.28E-02
63	GO:0042802: identical protein binding	1.37E-02
64	GO:0004672: protein kinase activity	1.43E-02
65	GO:0008237: metallopeptidase activity	1.53E-02
66	GO:0008236: serine-type peptidase activity	1.93E-02
67	GO:0015238: drug transmembrane transporter activity	2.07E-02
68	GO:0004222: metalloendopeptidase activity	2.15E-02
69	GO:0050897: cobalt ion binding	2.22E-02
70	GO:0003746: translation elongation factor activity	2.37E-02
71	GO:0050661: NADP binding	2.60E-02
72	GO:0043621: protein self-association	3.00E-02
73	GO:0035091: phosphatidylinositol binding	3.00E-02
74	GO:0051287: NAD binding	3.25E-02
75	GO:0004519: endonuclease activity	3.33E-02
76	GO:0016298: lipase activity	3.60E-02
77	GO:0003777: microtubule motor activity	3.77E-02
78	GO:0016874: ligase activity	4.32E-02
79	GO:0051082: unfolded protein binding	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	4.10E-29
4	GO:0009535: chloroplast thylakoid membrane	6.33E-16
5	GO:0009534: chloroplast thylakoid	7.15E-14
6	GO:0009570: chloroplast stroma	6.70E-11
7	GO:0009543: chloroplast thylakoid lumen	4.28E-10
8	GO:0009941: chloroplast envelope	5.16E-09
9	GO:0009579: thylakoid	9.99E-09
10	GO:0010287: plastoglobule	1.20E-04
11	GO:0031361: integral component of thylakoid membrane	1.30E-04
12	GO:0009344: nitrite reductase complex [NAD(P)H]	1.30E-04
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.31E-04
14	GO:0031304: intrinsic component of mitochondrial inner membrane	2.99E-04
15	GO:0031977: thylakoid lumen	3.25E-04
16	GO:0030095: chloroplast photosystem II	3.27E-04
17	GO:0033281: TAT protein transport complex	4.92E-04
18	GO:0005828: kinetochore microtubule	9.34E-04
19	GO:0000776: kinetochore	1.18E-03
20	GO:0030529: intracellular ribonucleoprotein complex	1.55E-03
21	GO:0000777: condensed chromosome kinetochore	1.73E-03
22	GO:0009533: chloroplast stromal thylakoid	2.04E-03
23	GO:0005876: spindle microtubule	3.41E-03
24	GO:0032040: small-subunit processome	4.58E-03
25	GO:0009706: chloroplast inner membrane	6.22E-03
26	GO:0009654: photosystem II oxygen evolving complex	7.30E-03
27	GO:0042651: thylakoid membrane	7.30E-03
28	GO:0009532: plastid stroma	7.79E-03
29	GO:0019898: extrinsic component of membrane	1.22E-02
30	GO:0005777: peroxisome	1.50E-02
31	GO:0048046: apoplast	1.87E-02
32	GO:0005743: mitochondrial inner membrane	2.85E-02
33	GO:0043231: intracellular membrane-bounded organelle	3.37E-02
34	GO:0009536: plastid	3.94E-02
35	GO:0005747: mitochondrial respiratory chain complex I	4.04E-02