Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045860: positive regulation of protein kinase activity0.00E+00
2GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
3GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
4GO:0006154: adenosine catabolic process0.00E+00
5GO:0015805: S-adenosyl-L-methionine transport0.00E+00
6GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
7GO:0045014: negative regulation of transcription by glucose0.00E+00
8GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
9GO:0043266: regulation of potassium ion transport1.46E-04
10GO:0010480: microsporocyte differentiation1.46E-04
11GO:0031338: regulation of vesicle fusion1.46E-04
12GO:2000021: regulation of ion homeostasis1.46E-04
13GO:0006148: inosine catabolic process1.46E-04
14GO:0045717: negative regulation of fatty acid biosynthetic process3.33E-04
15GO:0010289: homogalacturonan biosynthetic process3.33E-04
16GO:0010270: photosystem II oxygen evolving complex assembly3.33E-04
17GO:0090630: activation of GTPase activity5.47E-04
18GO:0043572: plastid fission7.83E-04
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.83E-04
20GO:0051639: actin filament network formation7.83E-04
21GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.66E-04
22GO:0015846: polyamine transport1.04E-03
23GO:0031122: cytoplasmic microtubule organization1.04E-03
24GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway1.04E-03
25GO:0010021: amylopectin biosynthetic process1.04E-03
26GO:0051781: positive regulation of cell division1.04E-03
27GO:0051764: actin crosslink formation1.04E-03
28GO:0006085: acetyl-CoA biosynthetic process1.04E-03
29GO:0016120: carotene biosynthetic process1.31E-03
30GO:0048497: maintenance of floral organ identity1.31E-03
31GO:0007094: mitotic spindle assembly checkpoint1.31E-03
32GO:0006828: manganese ion transport1.61E-03
33GO:0018258: protein O-linked glycosylation via hydroxyproline1.61E-03
34GO:0009913: epidermal cell differentiation1.61E-03
35GO:0010405: arabinogalactan protein metabolic process1.61E-03
36GO:0010304: PSII associated light-harvesting complex II catabolic process1.61E-03
37GO:0042549: photosystem II stabilization1.61E-03
38GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.61E-03
39GO:0006468: protein phosphorylation1.86E-03
40GO:0009942: longitudinal axis specification1.93E-03
41GO:0048437: floral organ development2.27E-03
42GO:0008610: lipid biosynthetic process2.63E-03
43GO:0009827: plant-type cell wall modification3.00E-03
44GO:0009657: plastid organization3.00E-03
45GO:0071482: cellular response to light stimulus3.00E-03
46GO:0015996: chlorophyll catabolic process3.00E-03
47GO:0048507: meristem development3.40E-03
48GO:0048589: developmental growth3.40E-03
49GO:0007346: regulation of mitotic cell cycle3.81E-03
50GO:0006779: porphyrin-containing compound biosynthetic process3.81E-03
51GO:0006782: protoporphyrinogen IX biosynthetic process4.23E-03
52GO:0019538: protein metabolic process4.23E-03
53GO:0006415: translational termination4.67E-03
54GO:1903507: negative regulation of nucleic acid-templated transcription4.67E-03
55GO:0048229: gametophyte development4.67E-03
56GO:0046856: phosphatidylinositol dephosphorylation4.67E-03
57GO:0006816: calcium ion transport4.67E-03
58GO:0046777: protein autophosphorylation4.97E-03
59GO:0006820: anion transport5.13E-03
60GO:0005983: starch catabolic process5.13E-03
61GO:0010152: pollen maturation5.13E-03
62GO:0010102: lateral root morphogenesis5.60E-03
63GO:0010075: regulation of meristem growth5.60E-03
64GO:0010020: chloroplast fission6.09E-03
65GO:0009934: regulation of meristem structural organization6.09E-03
66GO:0048768: root hair cell tip growth6.09E-03
67GO:0018105: peptidyl-serine phosphorylation7.54E-03
68GO:0007010: cytoskeleton organization7.63E-03
69GO:0051017: actin filament bundle assembly7.63E-03
70GO:0008299: isoprenoid biosynthetic process8.18E-03
71GO:2000022: regulation of jasmonic acid mediated signaling pathway9.30E-03
72GO:0048443: stamen development1.05E-02
73GO:0010051: xylem and phloem pattern formation1.17E-02
74GO:0048653: anther development1.17E-02
75GO:0009733: response to auxin1.22E-02
76GO:0045489: pectin biosynthetic process1.24E-02
77GO:0010305: leaf vascular tissue pattern formation1.24E-02
78GO:0016310: phosphorylation1.27E-02
79GO:0048825: cotyledon development1.37E-02
80GO:0019252: starch biosynthetic process1.37E-02
81GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.43E-02
82GO:0071554: cell wall organization or biogenesis1.43E-02
83GO:1901657: glycosyl compound metabolic process1.57E-02
84GO:0035556: intracellular signal transduction1.66E-02
85GO:0071805: potassium ion transmembrane transport1.72E-02
86GO:0010027: thylakoid membrane organization1.86E-02
87GO:0016126: sterol biosynthetic process1.86E-02
88GO:0005975: carbohydrate metabolic process1.92E-02
89GO:0009658: chloroplast organization1.97E-02
90GO:0015995: chlorophyll biosynthetic process2.09E-02
91GO:0009817: defense response to fungus, incompatible interaction2.25E-02
92GO:0030244: cellulose biosynthetic process2.25E-02
93GO:0018298: protein-chromophore linkage2.25E-02
94GO:0009834: plant-type secondary cell wall biogenesis2.41E-02
95GO:0016051: carbohydrate biosynthetic process2.66E-02
96GO:0006839: mitochondrial transport2.92E-02
97GO:0006629: lipid metabolic process3.60E-02
98GO:0031347: regulation of defense response3.65E-02
99GO:0048364: root development3.75E-02
100GO:0006812: cation transport3.75E-02
101GO:0042538: hyperosmotic salinity response3.75E-02
102GO:0009753: response to jasmonic acid3.86E-02
103GO:0006813: potassium ion transport3.94E-02
104GO:0008152: metabolic process3.96E-02
105GO:0048316: seed development4.54E-02
106GO:0042545: cell wall modification4.96E-02
RankGO TermAdjusted P value
1GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
2GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
3GO:0019808: polyamine binding0.00E+00
4GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
5GO:0004676: 3-phosphoinositide-dependent protein kinase activity0.00E+00
6GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
7GO:1990534: thermospermine oxidase activity0.00E+00
8GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
9GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.87E-05
10GO:0004033: aldo-keto reductase (NADP) activity1.02E-04
11GO:0050308: sugar-phosphatase activity1.46E-04
12GO:0004856: xylulokinase activity1.46E-04
13GO:0008568: microtubule-severing ATPase activity1.46E-04
14GO:0019203: carbohydrate phosphatase activity1.46E-04
15GO:0034256: chlorophyll(ide) b reductase activity1.46E-04
16GO:0004163: diphosphomevalonate decarboxylase activity1.46E-04
17GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity1.46E-04
18GO:0047622: adenosine nucleosidase activity1.46E-04
19GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer1.46E-04
20GO:0005227: calcium activated cation channel activity1.46E-04
21GO:0047724: inosine nucleosidase activity3.33E-04
22GO:0033201: alpha-1,4-glucan synthase activity3.33E-04
23GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity3.33E-04
24GO:0016301: kinase activity3.36E-04
25GO:0005524: ATP binding4.28E-04
26GO:0004373: glycogen (starch) synthase activity5.47E-04
27GO:0003913: DNA photolyase activity5.47E-04
28GO:0030267: glyoxylate reductase (NADP) activity5.47E-04
29GO:0070402: NADPH binding5.47E-04
30GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity5.47E-04
31GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity5.47E-04
32GO:0004674: protein serine/threonine kinase activity5.81E-04
33GO:0004445: inositol-polyphosphate 5-phosphatase activity7.83E-04
34GO:0016149: translation release factor activity, codon specific7.83E-04
35GO:0003878: ATP citrate synthase activity7.83E-04
36GO:0009011: starch synthase activity1.04E-03
37GO:0010011: auxin binding1.04E-03
38GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.04E-03
39GO:0016491: oxidoreductase activity1.14E-03
40GO:0016773: phosphotransferase activity, alcohol group as acceptor1.31E-03
41GO:0017137: Rab GTPase binding1.31E-03
42GO:0008381: mechanically-gated ion channel activity1.31E-03
43GO:0004672: protein kinase activity1.41E-03
44GO:0042578: phosphoric ester hydrolase activity1.61E-03
45GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity1.61E-03
46GO:2001070: starch binding1.61E-03
47GO:1990714: hydroxyproline O-galactosyltransferase activity1.61E-03
48GO:0016413: O-acetyltransferase activity1.71E-03
49GO:0015631: tubulin binding1.93E-03
50GO:0070300: phosphatidic acid binding1.93E-03
51GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity1.93E-03
52GO:0009881: photoreceptor activity2.27E-03
53GO:0008138: protein tyrosine/serine/threonine phosphatase activity3.40E-03
54GO:0003747: translation release factor activity3.40E-03
55GO:0005384: manganese ion transmembrane transporter activity3.81E-03
56GO:0047617: acyl-CoA hydrolase activity3.81E-03
57GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity5.13E-03
58GO:0030246: carbohydrate binding5.52E-03
59GO:0004565: beta-galactosidase activity5.60E-03
60GO:0015095: magnesium ion transmembrane transporter activity5.60E-03
61GO:0008131: primary amine oxidase activity6.09E-03
62GO:0005516: calmodulin binding6.55E-03
63GO:0003779: actin binding7.11E-03
64GO:0003714: transcription corepressor activity7.63E-03
65GO:0005528: FK506 binding7.63E-03
66GO:0015079: potassium ion transmembrane transporter activity8.18E-03
67GO:0004707: MAP kinase activity8.73E-03
68GO:0004176: ATP-dependent peptidase activity8.73E-03
69GO:0033612: receptor serine/threonine kinase binding8.73E-03
70GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity9.30E-03
71GO:0016787: hydrolase activity1.00E-02
72GO:0016853: isomerase activity1.30E-02
73GO:0008017: microtubule binding1.33E-02
74GO:0048038: quinone binding1.43E-02
75GO:0051015: actin filament binding1.57E-02
76GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.61E-02
77GO:0042802: identical protein binding1.61E-02
78GO:0008237: metallopeptidase activity1.72E-02
79GO:0016788: hydrolase activity, acting on ester bonds2.01E-02
80GO:0009931: calcium-dependent protein serine/threonine kinase activity2.01E-02
81GO:0004721: phosphoprotein phosphatase activity2.09E-02
82GO:0004683: calmodulin-dependent protein kinase activity2.09E-02
83GO:0102483: scopolin beta-glucosidase activity2.09E-02
84GO:0005096: GTPase activator activity2.33E-02
85GO:0004222: metalloendopeptidase activity2.41E-02
86GO:0030145: manganese ion binding2.49E-02
87GO:0008422: beta-glucosidase activity2.83E-02
88GO:0035091: phosphatidylinositol binding3.37E-02
89GO:0005509: calcium ion binding3.39E-02
90GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.56E-02
91GO:0044212: transcription regulatory region DNA binding3.75E-02
92GO:0003777: microtubule motor activity4.24E-02
93GO:0045330: aspartyl esterase activity4.24E-02
94GO:0030599: pectinesterase activity4.85E-02
RankGO TermAdjusted P value
1GO:0042597: periplasmic space0.00E+00
2GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
3GO:0009507: chloroplast7.18E-09
4GO:0009570: chloroplast stroma2.82E-05
5GO:0009941: chloroplast envelope3.32E-05
6GO:0032432: actin filament bundle7.83E-04
7GO:0009346: citrate lyase complex7.83E-04
8GO:0031969: chloroplast membrane8.23E-04
9GO:0005828: kinetochore microtubule1.04E-03
10GO:0000776: kinetochore1.31E-03
11GO:0000777: condensed chromosome kinetochore1.93E-03
12GO:0010369: chromocenter1.93E-03
13GO:0009501: amyloplast2.63E-03
14GO:0009535: chloroplast thylakoid membrane3.25E-03
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.40E-03
16GO:0005876: spindle microtubule3.81E-03
17GO:0005884: actin filament4.67E-03
18GO:0005886: plasma membrane7.29E-03
19GO:0010287: plastoglobule8.69E-03
20GO:0005874: microtubule2.36E-02
21GO:0005768: endosome3.29E-02
22GO:0005635: nuclear envelope4.14E-02
23GO:0009536: plastid4.81E-02
24GO:0016021: integral component of membrane4.88E-02
25GO:0009505: plant-type cell wall4.94E-02
26GO:0012505: endomembrane system4.96E-02
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Gene type



Gene DE type





AT5G60200