Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009991: response to extracellular stimulus0.00E+00
2GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway0.00E+00
3GO:0010111: glyoxysome organization0.00E+00
4GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
5GO:0030968: endoplasmic reticulum unfolded protein response1.27E-04
6GO:0010265: SCF complex assembly1.46E-04
7GO:0010201: response to continuous far red light stimulus by the high-irradiance response system1.46E-04
8GO:0046167: glycerol-3-phosphate biosynthetic process1.46E-04
9GO:0048508: embryonic meristem development1.46E-04
10GO:0048482: plant ovule morphogenesis1.46E-04
11GO:0000303: response to superoxide1.46E-04
12GO:0015969: guanosine tetraphosphate metabolic process1.46E-04
13GO:0006481: C-terminal protein methylation1.46E-04
14GO:0080136: priming of cellular response to stress1.46E-04
15GO:0034214: protein hexamerization1.46E-04
16GO:0009867: jasmonic acid mediated signaling pathway3.21E-04
17GO:0051258: protein polymerization3.33E-04
18GO:0019395: fatty acid oxidation3.33E-04
19GO:1905182: positive regulation of urease activity3.33E-04
20GO:0006641: triglyceride metabolic process3.33E-04
21GO:0030010: establishment of cell polarity3.33E-04
22GO:0009945: radial axis specification3.33E-04
23GO:0019563: glycerol catabolic process5.47E-04
24GO:0010359: regulation of anion channel activity5.47E-04
25GO:0043617: cellular response to sucrose starvation5.47E-04
26GO:0046621: negative regulation of organ growth5.47E-04
27GO:0009738: abscisic acid-activated signaling pathway7.30E-04
28GO:0006624: vacuolar protein processing7.83E-04
29GO:0006072: glycerol-3-phosphate metabolic process7.83E-04
30GO:0006809: nitric oxide biosynthetic process7.83E-04
31GO:0046777: protein autophosphorylation9.09E-04
32GO:2000038: regulation of stomatal complex development1.04E-03
33GO:0010188: response to microbial phytotoxin1.04E-03
34GO:0006878: cellular copper ion homeostasis1.04E-03
35GO:0043097: pyrimidine nucleoside salvage1.31E-03
36GO:0006914: autophagy1.53E-03
37GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione1.61E-03
38GO:1902456: regulation of stomatal opening1.61E-03
39GO:1900425: negative regulation of defense response to bacterium1.61E-03
40GO:0070814: hydrogen sulfide biosynthetic process1.61E-03
41GO:0048317: seed morphogenesis1.61E-03
42GO:0006206: pyrimidine nucleobase metabolic process1.61E-03
43GO:0009790: embryo development1.62E-03
44GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.92E-03
45GO:0009816: defense response to bacterium, incompatible interaction1.92E-03
46GO:0009942: longitudinal axis specification1.93E-03
47GO:2000037: regulation of stomatal complex patterning1.93E-03
48GO:0000911: cytokinesis by cell plate formation1.93E-03
49GO:0006950: response to stress2.13E-03
50GO:0015937: coenzyme A biosynthetic process2.27E-03
51GO:0006333: chromatin assembly or disassembly2.27E-03
52GO:0010038: response to metal ion2.27E-03
53GO:0009610: response to symbiotic fungus2.27E-03
54GO:0006614: SRP-dependent cotranslational protein targeting to membrane2.27E-03
55GO:0006470: protein dephosphorylation2.37E-03
56GO:0043068: positive regulation of programmed cell death2.63E-03
57GO:0006605: protein targeting2.63E-03
58GO:0032875: regulation of DNA endoreduplication2.63E-03
59GO:0048527: lateral root development2.72E-03
60GO:0010120: camalexin biosynthetic process3.00E-03
61GO:0009880: embryonic pattern specification3.00E-03
62GO:0090333: regulation of stomatal closure3.40E-03
63GO:0009611: response to wounding3.64E-03
64GO:0042761: very long-chain fatty acid biosynthetic process3.81E-03
65GO:2000280: regulation of root development3.81E-03
66GO:0006970: response to osmotic stress3.81E-03
67GO:0008202: steroid metabolic process3.81E-03
68GO:0048268: clathrin coat assembly3.81E-03
69GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway3.81E-03
70GO:0009723: response to ethylene4.18E-03
71GO:0000103: sulfate assimilation4.23E-03
72GO:0019538: protein metabolic process4.23E-03
73GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.63E-03
74GO:0010072: primary shoot apical meristem specification4.67E-03
75GO:0072593: reactive oxygen species metabolic process4.67E-03
76GO:0043085: positive regulation of catalytic activity4.67E-03
77GO:0042538: hyperosmotic salinity response4.80E-03
78GO:0012501: programmed cell death5.13E-03
79GO:0051603: proteolysis involved in cellular protein catabolic process5.33E-03
80GO:0006807: nitrogen compound metabolic process5.60E-03
81GO:0010229: inflorescence development5.60E-03
82GO:0055046: microgametogenesis5.60E-03
83GO:0010102: lateral root morphogenesis5.60E-03
84GO:0007034: vacuolar transport6.09E-03
85GO:0009887: animal organ morphogenesis6.09E-03
86GO:0002237: response to molecule of bacterial origin6.09E-03
87GO:0048367: shoot system development6.28E-03
88GO:0009626: plant-type hypersensitive response6.48E-03
89GO:0009825: multidimensional cell growth6.59E-03
90GO:2000377: regulation of reactive oxygen species metabolic process7.63E-03
91GO:0048364: root development7.90E-03
92GO:0009695: jasmonic acid biosynthetic process8.18E-03
93GO:0016575: histone deacetylation8.18E-03
94GO:0031408: oxylipin biosynthetic process8.73E-03
95GO:0061077: chaperone-mediated protein folding8.73E-03
96GO:0030433: ubiquitin-dependent ERAD pathway9.30E-03
97GO:0031348: negative regulation of defense response9.30E-03
98GO:0071215: cellular response to abscisic acid stimulus9.89E-03
99GO:0009737: response to abscisic acid9.92E-03
100GO:0042742: defense response to bacterium1.03E-02
101GO:0009873: ethylene-activated signaling pathway1.04E-02
102GO:0009561: megagametogenesis1.05E-02
103GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.11E-02
104GO:0009734: auxin-activated signaling pathway1.16E-02
105GO:0010087: phloem or xylem histogenesis1.17E-02
106GO:0042631: cellular response to water deprivation1.17E-02
107GO:0010197: polar nucleus fusion1.24E-02
108GO:0010154: fruit development1.24E-02
109GO:0016310: phosphorylation1.27E-02
110GO:0010150: leaf senescence1.27E-02
111GO:0048544: recognition of pollen1.30E-02
112GO:0042752: regulation of circadian rhythm1.30E-02
113GO:0009646: response to absence of light1.30E-02
114GO:0006623: protein targeting to vacuole1.37E-02
115GO:0010183: pollen tube guidance1.37E-02
116GO:0006468: protein phosphorylation1.38E-02
117GO:0010193: response to ozone1.43E-02
118GO:0006891: intra-Golgi vesicle-mediated transport1.43E-02
119GO:0006635: fatty acid beta-oxidation1.43E-02
120GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.43E-02
121GO:0002229: defense response to oomycetes1.43E-02
122GO:0010583: response to cyclopentenone1.50E-02
123GO:0016032: viral process1.50E-02
124GO:0009617: response to bacterium1.52E-02
125GO:0010468: regulation of gene expression1.52E-02
126GO:0006355: regulation of transcription, DNA-templated1.58E-02
127GO:0009409: response to cold1.62E-02
128GO:0006464: cellular protein modification process1.64E-02
129GO:0035556: intracellular signal transduction1.66E-02
130GO:0006351: transcription, DNA-templated1.66E-02
131GO:0071805: potassium ion transmembrane transport1.72E-02
132GO:0051607: defense response to virus1.79E-02
133GO:0006508: proteolysis1.86E-02
134GO:0048573: photoperiodism, flowering2.09E-02
135GO:0048481: plant ovule development2.25E-02
136GO:0009817: defense response to fungus, incompatible interaction2.25E-02
137GO:0048366: leaf development2.32E-02
138GO:0010311: lateral root formation2.33E-02
139GO:0010119: regulation of stomatal movement2.49E-02
140GO:0010200: response to chitin2.53E-02
141GO:0045892: negative regulation of transcription, DNA-templated2.97E-02
142GO:0006897: endocytosis3.01E-02
143GO:0006886: intracellular protein transport3.01E-02
144GO:0006631: fatty acid metabolic process3.01E-02
145GO:0009744: response to sucrose3.19E-02
146GO:0000209: protein polyubiquitination3.28E-02
147GO:0009751: response to salicylic acid3.55E-02
148GO:0006397: mRNA processing3.75E-02
149GO:0006979: response to oxidative stress3.78E-02
150GO:0009753: response to jasmonic acid3.86E-02
151GO:0009736: cytokinin-activated signaling pathway3.94E-02
152GO:0006813: potassium ion transport3.94E-02
153GO:0010224: response to UV-B4.04E-02
RankGO TermAdjusted P value
1GO:0004370: glycerol kinase activity0.00E+00
2GO:0033550: MAP kinase tyrosine phosphatase activity0.00E+00
3GO:0005515: protein binding2.17E-05
4GO:0005524: ATP binding2.48E-05
5GO:0016301: kinase activity3.12E-05
6GO:0070008: serine-type exopeptidase activity1.46E-04
7GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity1.46E-04
8GO:0019200: carbohydrate kinase activity3.33E-04
9GO:0008728: GTP diphosphokinase activity3.33E-04
10GO:0004594: pantothenate kinase activity3.33E-04
11GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding3.33E-04
12GO:0003988: acetyl-CoA C-acyltransferase activity3.33E-04
13GO:0004712: protein serine/threonine/tyrosine kinase activity3.60E-04
14GO:0043130: ubiquitin binding5.33E-04
15GO:0004781: sulfate adenylyltransferase (ATP) activity5.47E-04
16GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity5.47E-04
17GO:0016151: nickel cation binding5.47E-04
18GO:0005047: signal recognition particle binding5.47E-04
19GO:0004707: MAP kinase activity6.43E-04
20GO:0030527: structural constituent of chromatin7.83E-04
21GO:0004416: hydroxyacylglutathione hydrolase activity7.83E-04
22GO:0004301: epoxide hydrolase activity1.04E-03
23GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.31E-03
24GO:0004197: cysteine-type endopeptidase activity1.35E-03
25GO:0003924: GTPase activity1.47E-03
26GO:0005516: calmodulin binding1.57E-03
27GO:0031593: polyubiquitin binding1.61E-03
28GO:0004849: uridine kinase activity1.93E-03
29GO:0008113: peptide-methionine (S)-S-oxide reductase activity1.93E-03
30GO:0102391: decanoate--CoA ligase activity1.93E-03
31GO:0003950: NAD+ ADP-ribosyltransferase activity1.93E-03
32GO:0004467: long-chain fatty acid-CoA ligase activity2.27E-03
33GO:0004869: cysteine-type endopeptidase inhibitor activity2.63E-03
34GO:0008142: oxysterol binding3.00E-03
35GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)3.00E-03
36GO:0045309: protein phosphorylated amino acid binding3.81E-03
37GO:0005545: 1-phosphatidylinositol binding4.23E-03
38GO:0004713: protein tyrosine kinase activity4.23E-03
39GO:0019904: protein domain specific binding4.67E-03
40GO:0004521: endoribonuclease activity5.13E-03
41GO:0004674: protein serine/threonine kinase activity5.27E-03
42GO:0004175: endopeptidase activity6.09E-03
43GO:0004722: protein serine/threonine phosphatase activity6.45E-03
44GO:0004725: protein tyrosine phosphatase activity7.10E-03
45GO:0005525: GTP binding7.49E-03
46GO:0004407: histone deacetylase activity7.63E-03
47GO:0005528: FK506 binding7.63E-03
48GO:0015079: potassium ion transmembrane transporter activity8.18E-03
49GO:0043424: protein histidine kinase binding8.18E-03
50GO:0030276: clathrin binding1.24E-02
51GO:0000166: nucleotide binding1.55E-02
52GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.72E-02
53GO:0004672: protein kinase activity1.83E-02
54GO:0046982: protein heterodimerization activity1.93E-02
55GO:0009931: calcium-dependent protein serine/threonine kinase activity2.01E-02
56GO:0030247: polysaccharide binding2.09E-02
57GO:0004683: calmodulin-dependent protein kinase activity2.09E-02
58GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.17E-02
59GO:0008236: serine-type peptidase activity2.17E-02
60GO:0003677: DNA binding2.44E-02
61GO:0061630: ubiquitin protein ligase activity2.57E-02
62GO:0042803: protein homodimerization activity3.06E-02
63GO:0004871: signal transducer activity3.06E-02
64GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.56E-02
65GO:0008234: cysteine-type peptidase activity4.24E-02
66GO:0031625: ubiquitin protein ligase binding4.24E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0000323: lytic vacuole9.15E-06
3GO:0031972: chloroplast intermembrane space1.46E-04
4GO:0016602: CCAAT-binding factor complex3.41E-04
5GO:0005829: cytosol4.58E-04
6GO:0005783: endoplasmic reticulum4.92E-04
7GO:0042406: extrinsic component of endoplasmic reticulum membrane5.47E-04
8GO:0030139: endocytic vesicle5.47E-04
9GO:0005886: plasma membrane6.41E-04
10GO:0031461: cullin-RING ubiquitin ligase complex7.83E-04
11GO:0030136: clathrin-coated vesicle8.94E-04
12GO:0000164: protein phosphatase type 1 complex1.31E-03
13GO:0016363: nuclear matrix1.93E-03
14GO:0000794: condensed nuclear chromosome2.27E-03
15GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.00E-03
16GO:0009514: glyoxysome3.00E-03
17GO:0031902: late endosome membrane3.53E-03
18GO:0030665: clathrin-coated vesicle membrane3.81E-03
19GO:0017119: Golgi transport complex4.23E-03
20GO:0005634: nucleus5.10E-03
21GO:0005789: endoplasmic reticulum membrane5.57E-03
22GO:0005795: Golgi stack6.59E-03
23GO:0005905: clathrin-coated pit8.73E-03
24GO:0005768: endosome8.74E-03
25GO:0000785: chromatin1.50E-02
26GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.16E-02
27GO:0000151: ubiquitin ligase complex2.25E-02
28GO:0000786: nucleosome2.58E-02
29GO:0005802: trans-Golgi network2.80E-02
30GO:0005819: spindle2.83E-02
31GO:0005622: intracellular3.19E-02
32GO:0005635: nuclear envelope4.14E-02
33GO:0005773: vacuole4.62E-02
34GO:0005834: heterotrimeric G-protein complex4.65E-02
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Gene type



Gene DE type