co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006721: terpenoid metabolic process	0.00E+00
2	GO:0019307: mannose biosynthetic process	0.00E+00
3	GO:0072722: response to amitrole	0.00E+00
4	GO:0006042: glucosamine biosynthetic process	0.00E+00
5	GO:1901137: carbohydrate derivative biosynthetic process	0.00E+00
6	GO:0045047: protein targeting to ER	0.00E+00
7	GO:0034976: response to endoplasmic reticulum stress	1.87E-12
8	GO:0006457: protein folding	2.13E-11
9	GO:0045454: cell redox homeostasis	6.56E-08
10	GO:0009617: response to bacterium	7.29E-08
11	GO:0046686: response to cadmium ion	5.25E-07
12	GO:0042742: defense response to bacterium	2.78E-05
13	GO:0009627: systemic acquired resistance	3.12E-05
14	GO:0009697: salicylic acid biosynthetic process	5.65E-05
15	GO:0018279: protein N-linked glycosylation via asparagine	5.65E-05
16	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.15E-04
17	GO:0009306: protein secretion	1.16E-04
18	GO:0030091: protein repair	1.94E-04
19	GO:0006605: protein targeting	1.94E-04
20	GO:0009700: indole phytoalexin biosynthetic process	2.22E-04
21	GO:0043687: post-translational protein modification	2.22E-04
22	GO:0051775: response to redox state	2.22E-04
23	GO:0042964: thioredoxin reduction	2.22E-04
24	GO:0046244: salicylic acid catabolic process	2.22E-04
25	GO:0050691: regulation of defense response to virus by host	2.22E-04
26	GO:0010266: response to vitamin B1	2.22E-04
27	GO:0019276: UDP-N-acetylgalactosamine metabolic process	2.22E-04
28	GO:0034975: protein folding in endoplasmic reticulum	2.22E-04
29	GO:0006047: UDP-N-acetylglucosamine metabolic process	2.22E-04
30	GO:0016487: farnesol metabolic process	2.22E-04
31	GO:0010120: camalexin biosynthetic process	2.40E-04
32	GO:0030968: endoplasmic reticulum unfolded protein response	2.40E-04
33	GO:0009553: embryo sac development	3.09E-04
34	GO:0009682: induced systemic resistance	4.69E-04
35	GO:0009073: aromatic amino acid family biosynthetic process	4.69E-04
36	GO:0030003: cellular cation homeostasis	4.95E-04
37	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.95E-04
38	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	4.95E-04
39	GO:0006979: response to oxidative stress	6.22E-04
40	GO:0006099: tricarboxylic acid cycle	7.26E-04
41	GO:0010150: leaf senescence	7.59E-04
42	GO:0006421: asparaginyl-tRNA aminoacylation	8.05E-04
43	GO:0006013: mannose metabolic process	8.05E-04
44	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	8.05E-04
45	GO:0006011: UDP-glucose metabolic process	8.05E-04
46	GO:0010272: response to silver ion	8.05E-04
47	GO:0000162: tryptophan biosynthetic process	8.53E-04
48	GO:0015031: protein transport	1.03E-03
49	GO:0009651: response to salt stress	1.05E-03
50	GO:0033014: tetrapyrrole biosynthetic process	1.15E-03
51	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.15E-03
52	GO:0009298: GDP-mannose biosynthetic process	1.15E-03
53	GO:0002239: response to oomycetes	1.15E-03
54	GO:0072334: UDP-galactose transmembrane transport	1.15E-03
55	GO:0031348: negative regulation of defense response	1.24E-03
56	GO:0071456: cellular response to hypoxia	1.24E-03
57	GO:0000956: nuclear-transcribed mRNA catabolic process	1.53E-03
58	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.53E-03
59	GO:0045088: regulation of innate immune response	1.53E-03
60	GO:0048316: seed development	1.75E-03
61	GO:0000304: response to singlet oxygen	1.95E-03
62	GO:0045116: protein neddylation	1.95E-03
63	GO:0055114: oxidation-reduction process	1.99E-03
64	GO:0047484: regulation of response to osmotic stress	2.40E-03
65	GO:0042372: phylloquinone biosynthetic process	2.89E-03
66	GO:0009423: chorismate biosynthetic process	2.89E-03
67	GO:0009615: response to virus	3.26E-03
68	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.40E-03
69	GO:1902074: response to salt	3.40E-03
70	GO:0009408: response to heat	3.67E-03
71	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.94E-03
72	GO:0031540: regulation of anthocyanin biosynthetic process	3.94E-03
73	GO:0006102: isocitrate metabolic process	3.94E-03
74	GO:0019430: removal of superoxide radicals	4.51E-03
75	GO:0006367: transcription initiation from RNA polymerase II promoter	4.51E-03
76	GO:0009699: phenylpropanoid biosynthetic process	4.51E-03
77	GO:0006783: heme biosynthetic process	5.11E-03
78	GO:0010112: regulation of systemic acquired resistance	5.11E-03
79	GO:0015780: nucleotide-sugar transport	5.11E-03
80	GO:0098656: anion transmembrane transport	5.11E-03
81	GO:0046685: response to arsenic-containing substance	5.11E-03
82	GO:0010205: photoinhibition	5.74E-03
83	GO:0043067: regulation of programmed cell death	5.74E-03
84	GO:0006032: chitin catabolic process	6.38E-03
85	GO:0042542: response to hydrogen peroxide	6.66E-03
86	GO:0051707: response to other organism	6.93E-03
87	GO:0052544: defense response by callose deposition in cell wall	7.06E-03
88	GO:0000272: polysaccharide catabolic process	7.06E-03
89	GO:0006816: calcium ion transport	7.06E-03
90	GO:0009414: response to water deprivation	7.29E-03
91	GO:0009735: response to cytokinin	7.65E-03
92	GO:0002213: defense response to insect	7.76E-03
93	GO:0006790: sulfur compound metabolic process	7.76E-03
94	GO:0006820: anion transport	7.76E-03
95	GO:0010075: regulation of meristem growth	8.48E-03
96	GO:0006094: gluconeogenesis	8.48E-03
97	GO:0009846: pollen germination	8.71E-03
98	GO:0009555: pollen development	8.76E-03
99	GO:0006541: glutamine metabolic process	9.23E-03
100	GO:0002237: response to molecule of bacterial origin	9.23E-03
101	GO:0009934: regulation of meristem structural organization	9.23E-03
102	GO:0046688: response to copper ion	1.00E-02
103	GO:0019853: L-ascorbic acid biosynthetic process	1.00E-02
104	GO:0046854: phosphatidylinositol phosphorylation	1.00E-02
105	GO:0080147: root hair cell development	1.16E-02
106	GO:0006487: protein N-linked glycosylation	1.16E-02
107	GO:0006825: copper ion transport	1.24E-02
108	GO:0006874: cellular calcium ion homeostasis	1.24E-02
109	GO:0006886: intracellular protein transport	1.28E-02
110	GO:0016998: cell wall macromolecule catabolic process	1.33E-02
111	GO:0007131: reciprocal meiotic recombination	1.42E-02
112	GO:0030433: ubiquitin-dependent ERAD pathway	1.42E-02
113	GO:0019748: secondary metabolic process	1.42E-02
114	GO:0009625: response to insect	1.51E-02
115	GO:0010227: floral organ abscission	1.51E-02
116	GO:0009751: response to salicylic acid	1.57E-02
117	GO:0000413: protein peptidyl-prolyl isomerization	1.79E-02
118	GO:0010118: stomatal movement	1.79E-02
119	GO:0010154: fruit development	1.89E-02
120	GO:0010197: polar nucleus fusion	1.89E-02
121	GO:0048868: pollen tube development	1.89E-02
122	GO:0009851: auxin biosynthetic process	2.09E-02
123	GO:0002229: defense response to oomycetes	2.19E-02
124	GO:0000302: response to reactive oxygen species	2.19E-02
125	GO:0009630: gravitropism	2.30E-02
126	GO:0007264: small GTPase mediated signal transduction	2.30E-02
127	GO:0030163: protein catabolic process	2.41E-02
128	GO:0006952: defense response	2.45E-02
129	GO:0010252: auxin homeostasis	2.52E-02
130	GO:0006464: cellular protein modification process	2.52E-02
131	GO:0009567: double fertilization forming a zygote and endosperm	2.52E-02
132	GO:0016126: sterol biosynthetic process	2.85E-02
133	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.97E-02
134	GO:0006906: vesicle fusion	3.09E-02
135	GO:0015995: chlorophyll biosynthetic process	3.20E-02
136	GO:0016049: cell growth	3.32E-02
137	GO:0016311: dephosphorylation	3.32E-02
138	GO:0009817: defense response to fungus, incompatible interaction	3.45E-02
139	GO:0006499: N-terminal protein myristoylation	3.70E-02
140	GO:0010043: response to zinc ion	3.82E-02
141	GO:0007568: aging	3.82E-02
142	GO:0045087: innate immune response	4.08E-02
143	GO:0006887: exocytosis	4.61E-02
144	GO:0016192: vesicle-mediated transport	4.65E-02
145	GO:0006511: ubiquitin-dependent protein catabolic process	4.79E-02
146	GO:0050832: defense response to fungus	4.79E-02
147	GO:0009744: response to sucrose	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
4	GO:0004631: phosphomevalonate kinase activity	0.00E+00
5	GO:0004107: chorismate synthase activity	0.00E+00
6	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
7	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
8	GO:0047886: farnesol dehydrogenase activity	0.00E+00
9	GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity	0.00E+00
10	GO:0004615: phosphomannomutase activity	0.00E+00
11	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
12	GO:0003756: protein disulfide isomerase activity	1.97E-11
13	GO:0003746: translation elongation factor activity	3.56E-06
14	GO:0005460: UDP-glucose transmembrane transporter activity	1.93E-05
15	GO:0051082: unfolded protein binding	3.36E-05
16	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	5.65E-05
17	GO:0005459: UDP-galactose transmembrane transporter activity	5.65E-05
18	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.15E-04
19	GO:0004325: ferrochelatase activity	2.22E-04
20	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	2.22E-04
21	GO:0048037: cofactor binding	2.22E-04
22	GO:0008909: isochorismate synthase activity	2.22E-04
23	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.22E-04
24	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	2.22E-04
25	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.22E-04
26	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.22E-04
27	GO:0097367: carbohydrate derivative binding	2.22E-04
28	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.95E-04
29	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	4.95E-04
30	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.95E-04
31	GO:0019781: NEDD8 activating enzyme activity	4.95E-04
32	GO:0004148: dihydrolipoyl dehydrogenase activity	8.05E-04
33	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.05E-04
34	GO:0004816: asparagine-tRNA ligase activity	8.05E-04
35	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	8.05E-04
36	GO:0004049: anthranilate synthase activity	8.05E-04
37	GO:0000030: mannosyltransferase activity	8.05E-04
38	GO:0016531: copper chaperone activity	8.05E-04
39	GO:0004298: threonine-type endopeptidase activity	1.13E-03
40	GO:0035529: NADH pyrophosphatase activity	1.15E-03
41	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.15E-03
42	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.15E-03
43	GO:0051287: NAD binding	1.19E-03
44	GO:0004576: oligosaccharyl transferase activity	1.53E-03
45	GO:0016004: phospholipase activator activity	1.53E-03
46	GO:0004834: tryptophan synthase activity	1.53E-03
47	GO:0047631: ADP-ribose diphosphatase activity	1.95E-03
48	GO:0008641: small protein activating enzyme activity	1.95E-03
49	GO:0008233: peptidase activity	1.97E-03
50	GO:0015035: protein disulfide oxidoreductase activity	2.21E-03
51	GO:0000210: NAD+ diphosphatase activity	2.40E-03
52	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.40E-03
53	GO:0005261: cation channel activity	2.89E-03
54	GO:0004656: procollagen-proline 4-dioxygenase activity	2.89E-03
55	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.89E-03
56	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.89E-03
57	GO:0030515: snoRNA binding	3.40E-03
58	GO:0008320: protein transmembrane transporter activity	3.40E-03
59	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.40E-03
60	GO:0015288: porin activity	3.94E-03
61	GO:0005507: copper ion binding	4.11E-03
62	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.25E-03
63	GO:0008135: translation factor activity, RNA binding	4.51E-03
64	GO:0008308: voltage-gated anion channel activity	4.51E-03
65	GO:0050897: cobalt ion binding	4.91E-03
66	GO:0005525: GTP binding	5.29E-03
67	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.38E-03
68	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.74E-03
69	GO:0004568: chitinase activity	6.38E-03
70	GO:0005509: calcium ion binding	6.60E-03
71	GO:0004129: cytochrome-c oxidase activity	7.06E-03
72	GO:0004022: alcohol dehydrogenase (NAD) activity	8.48E-03
73	GO:0031072: heat shock protein binding	8.48E-03
74	GO:0005262: calcium channel activity	8.48E-03
75	GO:0000166: nucleotide binding	8.76E-03
76	GO:0008061: chitin binding	1.00E-02
77	GO:0005217: intracellular ligand-gated ion channel activity	1.00E-02
78	GO:0004970: ionotropic glutamate receptor activity	1.00E-02
79	GO:0004190: aspartic-type endopeptidase activity	1.00E-02
80	GO:0031418: L-ascorbic acid binding	1.16E-02
81	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.36E-02
82	GO:0016779: nucleotidyltransferase activity	1.42E-02
83	GO:0010181: FMN binding	1.99E-02
84	GO:0050662: coenzyme binding	1.99E-02
85	GO:0004791: thioredoxin-disulfide reductase activity	1.99E-02
86	GO:0016853: isomerase activity	1.99E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.41E-02
88	GO:0005506: iron ion binding	2.47E-02
89	GO:0008483: transaminase activity	2.63E-02
90	GO:0051213: dioxygenase activity	2.85E-02
91	GO:0030247: polysaccharide binding	3.20E-02
92	GO:0004683: calmodulin-dependent protein kinase activity	3.20E-02
93	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.32E-02
94	GO:0015238: drug transmembrane transporter activity	3.57E-02
95	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.82E-02
96	GO:0050660: flavin adenine dinucleotide binding	4.13E-02
97	GO:0000149: SNARE binding	4.34E-02
98	GO:0050661: NADP binding	4.47E-02
99	GO:0004674: protein serine/threonine kinase activity	4.64E-02
100	GO:0005484: SNAP receptor activity	4.88E-02
101	GO:0020037: heme binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005783: endoplasmic reticulum	2.13E-21
3	GO:0005788: endoplasmic reticulum lumen	2.47E-15
4	GO:0005774: vacuolar membrane	1.22E-07
5	GO:0005829: cytosol	2.40E-06
6	GO:0005789: endoplasmic reticulum membrane	2.30E-05
7	GO:0008250: oligosaccharyltransferase complex	5.65E-05
8	GO:0005886: plasma membrane	1.22E-04
9	GO:0005773: vacuole	1.47E-04
10	GO:0000502: proteasome complex	1.80E-04
11	GO:0045252: oxoglutarate dehydrogenase complex	2.22E-04
12	GO:0016020: membrane	4.78E-04
13	GO:0030134: ER to Golgi transport vesicle	4.95E-04
14	GO:0005750: mitochondrial respiratory chain complex III	6.86E-04
15	GO:0030176: integral component of endoplasmic reticulum membrane	7.67E-04
16	GO:0005672: transcription factor TFIIA complex	8.05E-04
17	GO:0009507: chloroplast	9.18E-04
18	GO:0009505: plant-type cell wall	1.00E-03
19	GO:0005839: proteasome core complex	1.13E-03
20	GO:1990726: Lsm1-7-Pat1 complex	1.15E-03
21	GO:0030660: Golgi-associated vesicle membrane	1.53E-03
22	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.53E-03
23	GO:0005746: mitochondrial respiratory chain	1.95E-03
24	GO:0031428: box C/D snoRNP complex	2.40E-03
25	GO:0032588: trans-Golgi network membrane	2.40E-03
26	GO:0016592: mediator complex	2.42E-03
27	GO:0009506: plasmodesma	2.88E-03
28	GO:0030173: integral component of Golgi membrane	2.89E-03
29	GO:0005623: cell	2.93E-03
30	GO:0009536: plastid	3.27E-03
31	GO:0031595: nuclear proteasome complex	3.40E-03
32	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.94E-03
33	GO:0005688: U6 snRNP	3.94E-03
34	GO:0000326: protein storage vacuole	4.51E-03
35	GO:0046930: pore complex	4.51E-03
36	GO:0019773: proteasome core complex, alpha-subunit complex	4.51E-03
37	GO:0046540: U4/U6 x U5 tri-snRNP complex	4.51E-03
38	GO:0031901: early endosome membrane	5.11E-03
39	GO:0005740: mitochondrial envelope	6.38E-03
40	GO:0008541: proteasome regulatory particle, lid subcomplex	7.06E-03
41	GO:0005765: lysosomal membrane	7.06E-03
42	GO:0005794: Golgi apparatus	7.22E-03
43	GO:0032040: small-subunit processome	7.76E-03
44	GO:0048046: apoplast	1.01E-02
45	GO:0005758: mitochondrial intermembrane space	1.16E-02
46	GO:0005834: heterotrimeric G-protein complex	1.18E-02
47	GO:0016021: integral component of membrane	1.25E-02
48	GO:0005741: mitochondrial outer membrane	1.33E-02
49	GO:0005759: mitochondrial matrix	2.11E-02
50	GO:0032580: Golgi cisterna membrane	2.52E-02
51	GO:0005618: cell wall	3.13E-02
52	GO:0015934: large ribosomal subunit	3.82E-02
53	GO:0031969: chloroplast membrane	4.42E-02
54	GO:0031201: SNARE complex	4.61E-02