co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0009913: epidermal cell differentiation	2.42E-05
4	GO:0008610: lipid biosynthetic process	6.06E-05
5	GO:0048507: meristem development	9.49E-05
6	GO:0010028: xanthophyll cycle	1.04E-04
7	GO:0034337: RNA folding	1.04E-04
8	GO:0019646: aerobic electron transport chain	1.04E-04
9	GO:0006824: cobalt ion transport	1.04E-04
10	GO:0000476: maturation of 4.5S rRNA	1.04E-04
11	GO:0000967: rRNA 5'-end processing	1.04E-04
12	GO:0010480: microsporocyte differentiation	1.04E-04
13	GO:0000481: maturation of 5S rRNA	1.04E-04
14	GO:0042547: cell wall modification involved in multidimensional cell growth	1.04E-04
15	GO:0016122: xanthophyll metabolic process	2.44E-04
16	GO:0010289: homogalacturonan biosynthetic process	2.44E-04
17	GO:0034470: ncRNA processing	2.44E-04
18	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.44E-04
19	GO:0034755: iron ion transmembrane transport	2.44E-04
20	GO:1900871: chloroplast mRNA modification	2.44E-04
21	GO:0006518: peptide metabolic process	4.05E-04
22	GO:0043572: plastid fission	5.82E-04
23	GO:0015994: chlorophyll metabolic process	7.73E-04
24	GO:0031122: cytoplasmic microtubule organization	7.73E-04
25	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	7.73E-04
26	GO:0010021: amylopectin biosynthetic process	7.73E-04
27	GO:0010438: cellular response to sulfur starvation	9.77E-04
28	GO:0048497: maintenance of floral organ identity	9.77E-04
29	GO:0042549: photosystem II stabilization	1.19E-03
30	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.19E-03
31	GO:0009759: indole glucosinolate biosynthetic process	1.19E-03
32	GO:0042372: phylloquinone biosynthetic process	1.43E-03
33	GO:0009942: longitudinal axis specification	1.43E-03
34	GO:0048280: vesicle fusion with Golgi apparatus	1.43E-03
35	GO:0048437: floral organ development	1.67E-03
36	GO:0010492: maintenance of shoot apical meristem identity	1.93E-03
37	GO:0032508: DNA duplex unwinding	1.93E-03
38	GO:0071482: cellular response to light stimulus	2.21E-03
39	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.66E-03
40	GO:0010205: photoinhibition	2.79E-03
41	GO:0006896: Golgi to vacuole transport	3.10E-03
42	GO:0019538: protein metabolic process	3.10E-03
43	GO:0006535: cysteine biosynthetic process from serine	3.10E-03
44	GO:0055114: oxidation-reduction process	3.21E-03
45	GO:0000038: very long-chain fatty acid metabolic process	3.42E-03
46	GO:0009773: photosynthetic electron transport in photosystem I	3.42E-03
47	GO:0048229: gametophyte development	3.42E-03
48	GO:0005983: starch catabolic process	3.75E-03
49	GO:0002213: defense response to insect	3.75E-03
50	GO:0018107: peptidyl-threonine phosphorylation	4.09E-03
51	GO:0009718: anthocyanin-containing compound biosynthetic process	4.09E-03
52	GO:0010075: regulation of meristem growth	4.09E-03
53	GO:0009767: photosynthetic electron transport chain	4.09E-03
54	GO:0010102: lateral root morphogenesis	4.09E-03
55	GO:0030048: actin filament-based movement	4.09E-03
56	GO:0009934: regulation of meristem structural organization	4.44E-03
57	GO:0010020: chloroplast fission	4.44E-03
58	GO:0010207: photosystem II assembly	4.44E-03
59	GO:0018105: peptidyl-serine phosphorylation	4.77E-03
60	GO:0000162: tryptophan biosynthetic process	5.18E-03
61	GO:0006636: unsaturated fatty acid biosynthetic process	5.18E-03
62	GO:0019344: cysteine biosynthetic process	5.56E-03
63	GO:0016575: histone deacetylation	5.95E-03
64	GO:0061077: chaperone-mediated protein folding	6.35E-03
65	GO:0009814: defense response, incompatible interaction	6.76E-03
66	GO:0016226: iron-sulfur cluster assembly	6.76E-03
67	GO:0006633: fatty acid biosynthetic process	7.28E-03
68	GO:0042147: retrograde transport, endosome to Golgi	8.05E-03
69	GO:0009409: response to cold	8.07E-03
70	GO:0048653: anther development	8.49E-03
71	GO:0042335: cuticle development	8.49E-03
72	GO:0000413: protein peptidyl-prolyl isomerization	8.49E-03
73	GO:0010051: xylem and phloem pattern formation	8.49E-03
74	GO:0009416: response to light stimulus	8.64E-03
75	GO:0010305: leaf vascular tissue pattern formation	8.95E-03
76	GO:0009739: response to gibberellin	8.95E-03
77	GO:0006623: protein targeting to vacuole	9.90E-03
78	GO:0048825: cotyledon development	9.90E-03
79	GO:0019252: starch biosynthetic process	9.90E-03
80	GO:0006891: intra-Golgi vesicle-mediated transport	1.04E-02
81	GO:0016126: sterol biosynthetic process	1.35E-02
82	GO:0015995: chlorophyll biosynthetic process	1.51E-02
83	GO:0006888: ER to Golgi vesicle-mediated transport	1.51E-02
84	GO:0018298: protein-chromophore linkage	1.62E-02
85	GO:0016051: carbohydrate biosynthetic process	1.92E-02
86	GO:0006631: fatty acid metabolic process	2.17E-02
87	GO:0032259: methylation	2.18E-02
88	GO:0016042: lipid catabolic process	2.21E-02
89	GO:0009753: response to jasmonic acid	2.44E-02
90	GO:0009733: response to auxin	2.44E-02
91	GO:0008152: metabolic process	2.51E-02
92	GO:0006855: drug transmembrane transport	2.57E-02
93	GO:0006364: rRNA processing	2.84E-02
94	GO:0006096: glycolytic process	3.20E-02
95	GO:0006810: transport	3.41E-02
96	GO:0006468: protein phosphorylation	4.01E-02
97	GO:0035556: intracellular signal transduction	4.25E-02
98	GO:0009845: seed germination	4.54E-02
99	GO:0045893: positive regulation of transcription, DNA-templated	4.62E-02
100	GO:0042744: hydrogen peroxide catabolic process	4.70E-02
101	GO:0009790: embryo development	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0051721: protein phosphatase 2A binding	0.00E+00
4	GO:0042903: tubulin deacetylase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0043014: alpha-tubulin binding	0.00E+00
7	GO:0050308: sugar-phosphatase activity	1.04E-04
8	GO:0045485: omega-6 fatty acid desaturase activity	1.04E-04
9	GO:0008568: microtubule-severing ATPase activity	1.04E-04
10	GO:0019203: carbohydrate phosphatase activity	1.04E-04
11	GO:0004163: diphosphomevalonate decarboxylase activity	1.04E-04
12	GO:0004047: aminomethyltransferase activity	2.44E-04
13	GO:0033201: alpha-1,4-glucan synthase activity	2.44E-04
14	GO:0050017: L-3-cyanoalanine synthase activity	2.44E-04
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.02E-04
16	GO:0005528: FK506 binding	3.40E-04
17	GO:0004373: glycogen (starch) synthase activity	4.05E-04
18	GO:0003913: DNA photolyase activity	4.05E-04
19	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.05E-04
20	GO:0004176: ATP-dependent peptidase activity	4.13E-04
21	GO:0019201: nucleotide kinase activity	5.82E-04
22	GO:0048487: beta-tubulin binding	5.82E-04
23	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	7.73E-04
24	GO:0009011: starch synthase activity	7.73E-04
25	GO:0008237: metallopeptidase activity	1.04E-03
26	GO:2001070: starch binding	1.19E-03
27	GO:0042578: phosphoric ester hydrolase activity	1.19E-03
28	GO:0004124: cysteine synthase activity	1.43E-03
29	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.43E-03
30	GO:0004017: adenylate kinase activity	1.43E-03
31	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.43E-03
32	GO:0042802: identical protein binding	1.52E-03
33	GO:0004222: metalloendopeptidase activity	1.66E-03
34	GO:0009881: photoreceptor activity	1.67E-03
35	GO:0016491: oxidoreductase activity	1.90E-03
36	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.21E-03
37	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.49E-03
38	GO:0005381: iron ion transmembrane transporter activity	2.79E-03
39	GO:0004022: alcohol dehydrogenase (NAD) activity	4.09E-03
40	GO:0003774: motor activity	4.44E-03
41	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.18E-03
42	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.18E-03
43	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.18E-03
44	GO:0003954: NADH dehydrogenase activity	5.56E-03
45	GO:0004407: histone deacetylase activity	5.56E-03
46	GO:0043424: protein histidine kinase binding	5.95E-03
47	GO:0033612: receptor serine/threonine kinase binding	6.35E-03
48	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	6.76E-03
49	GO:0030570: pectate lyase activity	7.18E-03
50	GO:0016887: ATPase activity	7.28E-03
51	GO:0004672: protein kinase activity	9.12E-03
52	GO:0008168: methyltransferase activity	1.19E-02
53	GO:0016788: hydrolase activity, acting on ester bonds	1.26E-02
54	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.45E-02
55	GO:0004683: calmodulin-dependent protein kinase activity	1.51E-02
56	GO:0004721: phosphoprotein phosphatase activity	1.51E-02
57	GO:0015238: drug transmembrane transporter activity	1.68E-02
58	GO:0052689: carboxylic ester hydrolase activity	1.70E-02
59	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.80E-02
60	GO:0000149: SNARE binding	2.04E-02
61	GO:0005484: SNAP receptor activity	2.30E-02
62	GO:0043621: protein self-association	2.43E-02
63	GO:0005524: ATP binding	2.61E-02
64	GO:0008289: lipid binding	3.17E-02
65	GO:0016874: ligase activity	3.50E-02
66	GO:0003779: actin binding	3.58E-02
67	GO:0016746: transferase activity, transferring acyl groups	3.73E-02
68	GO:0016829: lyase activity	4.54E-02
69	GO:0030170: pyridoxal phosphate binding	4.62E-02
70	GO:0008565: protein transporter activity	4.87E-02
71	GO:0016740: transferase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.28E-16
2	GO:0009534: chloroplast thylakoid	2.43E-09
3	GO:0009535: chloroplast thylakoid membrane	1.18E-07
4	GO:0009543: chloroplast thylakoid lumen	1.67E-07
5	GO:0010287: plastoglobule	3.88E-06
6	GO:0009579: thylakoid	8.08E-06
7	GO:0031977: thylakoid lumen	1.18E-05
8	GO:0009344: nitrite reductase complex [NAD(P)H]	1.04E-04
9	GO:0009941: chloroplast envelope	1.32E-04
10	GO:0030095: chloroplast photosystem II	2.43E-04
11	GO:0031304: intrinsic component of mitochondrial inner membrane	2.44E-04
12	GO:0009570: chloroplast stroma	3.52E-04
13	GO:0009533: chloroplast stromal thylakoid	1.67E-03
14	GO:0012507: ER to Golgi transport vesicle membrane	1.93E-03
15	GO:0009501: amyloplast	1.93E-03
16	GO:0016459: myosin complex	3.10E-03
17	GO:0032040: small-subunit processome	3.75E-03
18	GO:0009706: chloroplast inner membrane	4.64E-03
19	GO:0009654: photosystem II oxygen evolving complex	5.95E-03
20	GO:0019898: extrinsic component of membrane	9.90E-03
21	GO:0031201: SNARE complex	2.17E-02
22	GO:0031902: late endosome membrane	2.17E-02
23	GO:0016021: integral component of membrane	2.74E-02
24	GO:0005886: plasma membrane	2.96E-02
25	GO:0005789: endoplasmic reticulum membrane	3.58E-02
26	GO:0005777: peroxisome	4.62E-02