Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G55680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902446: regulation of shade avoidance0.00E+00
2GO:0080136: priming of cellular response to stress1.39E-05
3GO:1903648: positive regulation of chlorophyll catabolic process1.39E-05
4GO:0043631: RNA polyadenylation3.65E-05
5GO:0034398: telomere tethering at nuclear periphery3.65E-05
6GO:2000034: regulation of seed maturation6.55E-05
7GO:1901000: regulation of response to salt stress9.94E-05
8GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery9.94E-05
9GO:2000306: positive regulation of photomorphogenesis1.37E-04
10GO:2000038: regulation of stomatal complex development1.37E-04
11GO:0016558: protein import into peroxisome matrix1.78E-04
12GO:2000037: regulation of stomatal complex patterning2.68E-04
13GO:1900057: positive regulation of leaf senescence3.15E-04
14GO:0006333: chromatin assembly or disassembly3.15E-04
15GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.15E-04
16GO:0010120: camalexin biosynthetic process4.16E-04
17GO:0006378: mRNA polyadenylation6.34E-04
18GO:0006829: zinc II ion transport7.52E-04
19GO:0010229: inflorescence development7.52E-04
20GO:0010030: positive regulation of seed germination8.75E-04
21GO:0042023: DNA endoreduplication9.38E-04
22GO:0006406: mRNA export from nucleus1.00E-03
23GO:0003333: amino acid transmembrane transport1.13E-03
24GO:0010091: trichome branching1.34E-03
25GO:0006606: protein import into nucleus1.49E-03
26GO:0010183: pollen tube guidance1.72E-03
27GO:0000302: response to reactive oxygen species1.80E-03
28GO:0006635: fatty acid beta-oxidation1.80E-03
29GO:0048364: root development1.82E-03
30GO:0019760: glucosinolate metabolic process2.04E-03
31GO:0016579: protein deubiquitination2.21E-03
32GO:0010029: regulation of seed germination2.39E-03
33GO:0048481: plant ovule development2.75E-03
34GO:0009738: abscisic acid-activated signaling pathway2.96E-03
35GO:0016567: protein ubiquitination3.18E-03
36GO:0030001: metal ion transport3.52E-03
37GO:0009651: response to salt stress3.60E-03
38GO:0042542: response to hydrogen peroxide3.73E-03
39GO:0008283: cell proliferation3.83E-03
40GO:0031347: regulation of defense response4.36E-03
41GO:0010224: response to UV-B4.81E-03
42GO:0048367: shoot system development5.38E-03
43GO:0009626: plant-type hypersensitive response5.50E-03
44GO:0009620: response to fungus5.62E-03
45GO:0009740: gibberellic acid mediated signaling pathway5.74E-03
46GO:0010150: leaf senescence8.74E-03
47GO:0006470: protein dephosphorylation9.60E-03
48GO:0010468: regulation of gene expression9.90E-03
49GO:0006970: response to osmotic stress1.25E-02
50GO:0009737: response to abscisic acid1.31E-02
51GO:0009723: response to ethylene1.32E-02
52GO:0048366: leaf development1.33E-02
53GO:0010200: response to chitin1.42E-02
54GO:0016310: phosphorylation1.52E-02
55GO:0045892: negative regulation of transcription, DNA-templated1.59E-02
56GO:0009908: flower development2.55E-02
57GO:0006355: regulation of transcription, DNA-templated2.58E-02
58GO:0009555: pollen development2.74E-02
59GO:0009611: response to wounding2.79E-02
60GO:0051301: cell division2.92E-02
61GO:0045893: positive regulation of transcription, DNA-templated3.03E-02
62GO:0055085: transmembrane transport3.25E-02
63GO:0006511: ubiquitin-dependent protein catabolic process3.41E-02
64GO:0006351: transcription, DNA-templated4.10E-02
65GO:0009414: response to water deprivation4.46E-02
66GO:0042742: defense response to bacterium4.54E-02
67GO:0006979: response to oxidative stress4.56E-02
RankGO TermAdjusted P value
1GO:0004103: choline kinase activity3.65E-05
2GO:0001047: core promoter binding3.65E-05
3GO:0005515: protein binding9.35E-05
4GO:0004652: polynucleotide adenylyltransferase activity9.94E-05
5GO:0017056: structural constituent of nuclear pore3.65E-04
6GO:0015174: basic amino acid transmembrane transporter activity5.23E-04
7GO:0005487: nucleocytoplasmic transporter activity5.23E-04
8GO:0000976: transcription regulatory region sequence-specific DNA binding6.93E-04
9GO:0008139: nuclear localization sequence binding7.52E-04
10GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.13E-03
11GO:0004707: MAP kinase activity1.13E-03
12GO:0016779: nucleotidyltransferase activity1.20E-03
13GO:0046873: metal ion transmembrane transporter activity1.56E-03
14GO:0004843: thiol-dependent ubiquitin-specific protease activity1.80E-03
15GO:0015171: amino acid transmembrane transporter activity5.03E-03
16GO:0016874: ligase activity5.74E-03
17GO:0043565: sequence-specific DNA binding6.15E-03
18GO:0044212: transcription regulatory region DNA binding6.16E-03
19GO:0004386: helicase activity6.35E-03
20GO:0004842: ubiquitin-protein transferase activity8.51E-03
21GO:0046982: protein heterodimerization activity1.17E-02
22GO:0003700: transcription factor activity, sequence-specific DNA binding1.22E-02
23GO:0003682: chromatin binding1.24E-02
24GO:0008270: zinc ion binding1.26E-02
25GO:0004722: protein serine/threonine phosphatase activity1.68E-02
26GO:0005524: ATP binding2.54E-02
27GO:0005516: calmodulin binding3.67E-02
28GO:0003723: RNA binding4.81E-02
29GO:0005215: transporter activity4.87E-02
RankGO TermAdjusted P value
1GO:0044614: nuclear pore cytoplasmic filaments6.55E-05
2GO:0009574: preprophase band7.52E-04
3GO:0031965: nuclear membrane1.72E-03
4GO:0005778: peroxisomal membrane2.13E-03
5GO:0005635: nuclear envelope4.92E-03
6GO:0009706: chloroplast inner membrane5.98E-03
7GO:0005623: cell7.11E-03
8GO:0009524: phragmoplast7.25E-03
9GO:0009705: plant-type vacuole membrane8.74E-03
10GO:0005773: vacuole3.29E-02
11GO:0005802: trans-Golgi network3.84E-02
12GO:0005622: intracellular4.13E-02
13GO:0005634: nucleus4.80E-02
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Gene type



Gene DE type