co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
4	GO:0006223: uracil salvage	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0005996: monosaccharide metabolic process	0.00E+00
8	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
9	GO:0015979: photosynthesis	5.68E-24
10	GO:0006412: translation	2.98E-15
11	GO:0032544: plastid translation	1.62E-13
12	GO:0015995: chlorophyll biosynthetic process	2.36E-11
13	GO:0009735: response to cytokinin	9.26E-11
14	GO:0042254: ribosome biogenesis	2.70E-10
15	GO:0010027: thylakoid membrane organization	1.53E-08
16	GO:0009773: photosynthetic electron transport in photosystem I	3.66E-08
17	GO:0009658: chloroplast organization	6.77E-07
18	GO:0009409: response to cold	5.52E-06
19	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.89E-06
20	GO:0010196: nonphotochemical quenching	1.23E-05
21	GO:0090391: granum assembly	2.73E-05
22	GO:0019464: glycine decarboxylation via glycine cleavage system	1.04E-04
23	GO:0006546: glycine catabolic process	1.04E-04
24	GO:0010207: photosystem II assembly	1.39E-04
25	GO:0045454: cell redox homeostasis	1.68E-04
26	GO:0018298: protein-chromophore linkage	2.28E-04
27	GO:1901259: chloroplast rRNA processing	3.09E-04
28	GO:0034337: RNA folding	4.21E-04
29	GO:0071588: hydrogen peroxide mediated signaling pathway	4.21E-04
30	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.21E-04
31	GO:0043489: RNA stabilization	4.21E-04
32	GO:0042255: ribosome assembly	4.99E-04
33	GO:0000413: protein peptidyl-prolyl isomerization	5.10E-04
34	GO:0042742: defense response to bacterium	5.35E-04
35	GO:0009657: plastid organization	6.09E-04
36	GO:0006783: heme biosynthetic process	7.29E-04
37	GO:0010206: photosystem II repair	7.29E-04
38	GO:0032502: developmental process	8.00E-04
39	GO:0080183: response to photooxidative stress	9.10E-04
40	GO:0006521: regulation of cellular amino acid metabolic process	9.10E-04
41	GO:0030388: fructose 1,6-bisphosphate metabolic process	9.10E-04
42	GO:0006782: protoporphyrinogen IX biosynthetic process	1.00E-03
43	GO:0018119: peptidyl-cysteine S-nitrosylation	1.15E-03
44	GO:0019684: photosynthesis, light reaction	1.15E-03
45	GO:0071492: cellular response to UV-A	1.48E-03
46	GO:0015714: phosphoenolpyruvate transport	1.48E-03
47	GO:0006000: fructose metabolic process	1.48E-03
48	GO:0006518: peptide metabolic process	1.48E-03
49	GO:0006006: glucose metabolic process	1.49E-03
50	GO:0019253: reductive pentose-phosphate cycle	1.68E-03
51	GO:0006636: unsaturated fatty acid biosynthetic process	2.10E-03
52	GO:0055070: copper ion homeostasis	2.14E-03
53	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.14E-03
54	GO:2001141: regulation of RNA biosynthetic process	2.14E-03
55	GO:0051513: regulation of monopolar cell growth	2.14E-03
56	GO:0071484: cellular response to light intensity	2.14E-03
57	GO:0006241: CTP biosynthetic process	2.14E-03
58	GO:0080170: hydrogen peroxide transmembrane transport	2.14E-03
59	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.14E-03
60	GO:0006165: nucleoside diphosphate phosphorylation	2.14E-03
61	GO:0006228: UTP biosynthetic process	2.14E-03
62	GO:0034599: cellular response to oxidative stress	2.34E-03
63	GO:0009768: photosynthesis, light harvesting in photosystem I	2.58E-03
64	GO:0010037: response to carbon dioxide	2.88E-03
65	GO:0015976: carbon utilization	2.88E-03
66	GO:0071486: cellular response to high light intensity	2.88E-03
67	GO:0009765: photosynthesis, light harvesting	2.88E-03
68	GO:0006183: GTP biosynthetic process	2.88E-03
69	GO:0045727: positive regulation of translation	2.88E-03
70	GO:0015994: chlorophyll metabolic process	2.88E-03
71	GO:2000122: negative regulation of stomatal complex development	2.88E-03
72	GO:0030104: water homeostasis	2.88E-03
73	GO:0015713: phosphoglycerate transport	2.88E-03
74	GO:0044206: UMP salvage	2.88E-03
75	GO:0006021: inositol biosynthetic process	2.88E-03
76	GO:0009411: response to UV	3.38E-03
77	GO:0031365: N-terminal protein amino acid modification	3.68E-03
78	GO:0006461: protein complex assembly	3.68E-03
79	GO:0009247: glycolipid biosynthetic process	3.68E-03
80	GO:0034052: positive regulation of plant-type hypersensitive response	3.68E-03
81	GO:0032543: mitochondrial translation	3.68E-03
82	GO:0043097: pyrimidine nucleoside salvage	3.68E-03
83	GO:0006810: transport	4.08E-03
84	GO:0042549: photosystem II stabilization	4.56E-03
85	GO:0006206: pyrimidine nucleobase metabolic process	4.56E-03
86	GO:0032973: amino acid export	4.56E-03
87	GO:0046855: inositol phosphate dephosphorylation	4.56E-03
88	GO:0009854: oxidative photosynthetic carbon pathway	5.49E-03
89	GO:0010019: chloroplast-nucleus signaling pathway	5.49E-03
90	GO:0010555: response to mannitol	5.49E-03
91	GO:0009955: adaxial/abaxial pattern specification	5.49E-03
92	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.49E-03
93	GO:0017148: negative regulation of translation	5.49E-03
94	GO:0000302: response to reactive oxygen species	5.75E-03
95	GO:0006400: tRNA modification	6.49E-03
96	GO:0009772: photosynthetic electron transport in photosystem II	6.49E-03
97	GO:0043090: amino acid import	6.49E-03
98	GO:0009645: response to low light intensity stimulus	6.49E-03
99	GO:0050829: defense response to Gram-negative bacterium	6.49E-03
100	GO:0048564: photosystem I assembly	7.55E-03
101	GO:0009642: response to light intensity	7.55E-03
102	GO:0046620: regulation of organ growth	7.55E-03
103	GO:0006353: DNA-templated transcription, termination	7.55E-03
104	GO:0043068: positive regulation of programmed cell death	7.55E-03
105	GO:0006605: protein targeting	7.55E-03
106	GO:0019375: galactolipid biosynthetic process	7.55E-03
107	GO:0080167: response to karrikin	8.49E-03
108	GO:0017004: cytochrome complex assembly	8.67E-03
109	GO:0006002: fructose 6-phosphate metabolic process	8.67E-03
110	GO:0071482: cellular response to light stimulus	8.67E-03
111	GO:0009627: systemic acquired resistance	9.31E-03
112	GO:0000373: Group II intron splicing	9.85E-03
113	GO:0009051: pentose-phosphate shunt, oxidative branch	9.85E-03
114	GO:0009245: lipid A biosynthetic process	9.85E-03
115	GO:0080144: amino acid homeostasis	9.85E-03
116	GO:0055114: oxidation-reduction process	1.09E-02
117	GO:0042744: hydrogen peroxide catabolic process	1.11E-02
118	GO:0010205: photoinhibition	1.11E-02
119	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.24E-02
120	GO:0009631: cold acclimation	1.26E-02
121	GO:0006352: DNA-templated transcription, initiation	1.37E-02
122	GO:0000272: polysaccharide catabolic process	1.37E-02
123	GO:0009750: response to fructose	1.37E-02
124	GO:0009698: phenylpropanoid metabolic process	1.37E-02
125	GO:0009089: lysine biosynthetic process via diaminopimelate	1.37E-02
126	GO:0043085: positive regulation of catalytic activity	1.37E-02
127	GO:0009637: response to blue light	1.38E-02
128	GO:0009853: photorespiration	1.38E-02
129	GO:0045490: pectin catabolic process	1.41E-02
130	GO:0006790: sulfur compound metabolic process	1.51E-02
131	GO:0009725: response to hormone	1.65E-02
132	GO:0006094: gluconeogenesis	1.65E-02
133	GO:0009767: photosynthetic electron transport chain	1.65E-02
134	GO:0005986: sucrose biosynthetic process	1.65E-02
135	GO:0010628: positive regulation of gene expression	1.65E-02
136	GO:0010114: response to red light	1.79E-02
137	GO:0009744: response to sucrose	1.79E-02
138	GO:0009644: response to high light intensity	1.94E-02
139	GO:0046854: phosphatidylinositol phosphorylation	1.95E-02
140	GO:0046688: response to copper ion	1.95E-02
141	GO:0019853: L-ascorbic acid biosynthetic process	1.95E-02
142	GO:0019762: glucosinolate catabolic process	2.11E-02
143	GO:0006487: protein N-linked glycosylation	2.27E-02
144	GO:0019344: cysteine biosynthetic process	2.27E-02
145	GO:0009116: nucleoside metabolic process	2.27E-02
146	GO:0000027: ribosomal large subunit assembly	2.27E-02
147	GO:0048511: rhythmic process	2.60E-02
148	GO:0061077: chaperone-mediated protein folding	2.60E-02
149	GO:0031408: oxylipin biosynthetic process	2.60E-02
150	GO:0019748: secondary metabolic process	2.78E-02
151	GO:0009814: defense response, incompatible interaction	2.78E-02
152	GO:0016226: iron-sulfur cluster assembly	2.78E-02
153	GO:0006012: galactose metabolic process	2.96E-02
154	GO:0009306: protein secretion	3.14E-02
155	GO:0006284: base-excision repair	3.14E-02
156	GO:0009561: megagametogenesis	3.14E-02
157	GO:0009740: gibberellic acid mediated signaling pathway	3.24E-02
158	GO:0042545: cell wall modification	3.34E-02
159	GO:0034220: ion transmembrane transport	3.51E-02
160	GO:0042631: cellular response to water deprivation	3.51E-02
161	GO:0042335: cuticle development	3.51E-02
162	GO:0006662: glycerol ether metabolic process	3.70E-02
163	GO:0015986: ATP synthesis coupled proton transport	3.90E-02
164	GO:0042752: regulation of circadian rhythm	3.90E-02
165	GO:0019252: starch biosynthetic process	4.10E-02
166	GO:0009749: response to glucose	4.10E-02
167	GO:0002229: defense response to oomycetes	4.30E-02
168	GO:0009790: embryo development	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0051738: xanthophyll binding	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
7	GO:0008887: glycerate kinase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
10	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
11	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
12	GO:0019843: rRNA binding	2.60E-26
13	GO:0003735: structural constituent of ribosome	1.17E-19
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.70E-10
15	GO:0016168: chlorophyll binding	1.90E-08
16	GO:0005528: FK506 binding	3.14E-07
17	GO:0051920: peroxiredoxin activity	7.74E-06
18	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.89E-06
19	GO:0016209: antioxidant activity	1.83E-05
20	GO:0022891: substrate-specific transmembrane transporter activity	2.54E-05
21	GO:0004375: glycine dehydrogenase (decarboxylating) activity	5.93E-05
22	GO:0016851: magnesium chelatase activity	5.93E-05
23	GO:0043495: protein anchor	1.04E-04
24	GO:0004130: cytochrome-c peroxidase activity	2.30E-04
25	GO:0004601: peroxidase activity	3.31E-04
26	GO:0019899: enzyme binding	3.99E-04
27	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.21E-04
28	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	4.21E-04
29	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	4.21E-04
30	GO:0051537: 2 iron, 2 sulfur cluster binding	5.71E-04
31	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.09E-04
32	GO:0047746: chlorophyllase activity	9.10E-04
33	GO:0042389: omega-3 fatty acid desaturase activity	9.10E-04
34	GO:0010297: heteropolysaccharide binding	9.10E-04
35	GO:0004047: aminomethyltransferase activity	9.10E-04
36	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	9.10E-04
37	GO:0052832: inositol monophosphate 3-phosphatase activity	9.10E-04
38	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	9.10E-04
39	GO:0016630: protochlorophyllide reductase activity	9.10E-04
40	GO:0008934: inositol monophosphate 1-phosphatase activity	9.10E-04
41	GO:0052833: inositol monophosphate 4-phosphatase activity	9.10E-04
42	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	9.10E-04
43	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	9.10E-04
44	GO:0008967: phosphoglycolate phosphatase activity	9.10E-04
45	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.48E-03
46	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.48E-03
47	GO:0004148: dihydrolipoyl dehydrogenase activity	1.48E-03
48	GO:0031072: heat shock protein binding	1.49E-03
49	GO:0008266: poly(U) RNA binding	1.68E-03
50	GO:0031409: pigment binding	2.10E-03
51	GO:0004550: nucleoside diphosphate kinase activity	2.14E-03
52	GO:0035250: UDP-galactosyltransferase activity	2.14E-03
53	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	2.14E-03
54	GO:0015120: phosphoglycerate transmembrane transporter activity	2.88E-03
55	GO:0004659: prenyltransferase activity	2.88E-03
56	GO:0001053: plastid sigma factor activity	2.88E-03
57	GO:0004845: uracil phosphoribosyltransferase activity	2.88E-03
58	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.88E-03
59	GO:0016987: sigma factor activity	2.88E-03
60	GO:0003727: single-stranded RNA binding	3.68E-03
61	GO:0008725: DNA-3-methyladenine glycosylase activity	3.68E-03
62	GO:0003959: NADPH dehydrogenase activity	3.68E-03
63	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.68E-03
64	GO:0005509: calcium ion binding	4.08E-03
65	GO:0016688: L-ascorbate peroxidase activity	4.56E-03
66	GO:0031177: phosphopantetheine binding	4.56E-03
67	GO:0042578: phosphoric ester hydrolase activity	4.56E-03
68	GO:0003690: double-stranded DNA binding	4.68E-03
69	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.49E-03
70	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.49E-03
71	GO:0004849: uridine kinase activity	5.49E-03
72	GO:0000035: acyl binding	5.49E-03
73	GO:0008235: metalloexopeptidase activity	6.49E-03
74	GO:0015035: protein disulfide oxidoreductase activity	7.30E-03
75	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	7.55E-03
76	GO:0004034: aldose 1-epimerase activity	7.55E-03
77	GO:0004033: aldo-keto reductase (NADP) activity	7.55E-03
78	GO:0016597: amino acid binding	7.86E-03
79	GO:0004222: metalloendopeptidase activity	1.20E-02
80	GO:0008047: enzyme activator activity	1.24E-02
81	GO:0004177: aminopeptidase activity	1.37E-02
82	GO:0008794: arsenate reductase (glutaredoxin) activity	1.37E-02
83	GO:0050661: NADP binding	1.58E-02
84	GO:0004089: carbonate dehydratase activity	1.65E-02
85	GO:0009055: electron carrier activity	1.70E-02
86	GO:0004185: serine-type carboxypeptidase activity	1.79E-02
87	GO:0051536: iron-sulfur cluster binding	2.27E-02
88	GO:0016491: oxidoreductase activity	2.36E-02
89	GO:0045330: aspartyl esterase activity	2.67E-02
90	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.95E-02
91	GO:0030570: pectate lyase activity	2.96E-02
92	GO:0004650: polygalacturonase activity	3.14E-02
93	GO:0003756: protein disulfide isomerase activity	3.14E-02
94	GO:0030599: pectinesterase activity	3.24E-02
95	GO:0047134: protein-disulfide reductase activity	3.32E-02
96	GO:0051082: unfolded protein binding	3.44E-02
97	GO:0046872: metal ion binding	3.62E-02
98	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.70E-02
99	GO:0004791: thioredoxin-disulfide reductase activity	3.90E-02
100	GO:0016853: isomerase activity	3.90E-02
101	GO:0050662: coenzyme binding	3.90E-02
102	GO:0003723: RNA binding	4.39E-02
103	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009507: chloroplast	4.28E-104
5	GO:0009535: chloroplast thylakoid membrane	5.64E-71
6	GO:0009570: chloroplast stroma	1.88E-54
7	GO:0009579: thylakoid	1.02E-50
8	GO:0009941: chloroplast envelope	2.67E-48
9	GO:0009534: chloroplast thylakoid	2.82E-44
10	GO:0009543: chloroplast thylakoid lumen	3.78E-35
11	GO:0031977: thylakoid lumen	1.78E-25
12	GO:0005840: ribosome	2.23E-23
13	GO:0009654: photosystem II oxygen evolving complex	1.93E-12
14	GO:0030095: chloroplast photosystem II	2.30E-11
15	GO:0019898: extrinsic component of membrane	2.81E-09
16	GO:0009523: photosystem II	1.08E-07
17	GO:0009706: chloroplast inner membrane	2.58E-06
18	GO:0000311: plastid large ribosomal subunit	3.09E-06
19	GO:0010319: stromule	7.61E-06
20	GO:0010007: magnesium chelatase complex	2.73E-05
21	GO:0015934: large ribosomal subunit	2.83E-05
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.56E-05
23	GO:0010287: plastoglobule	4.84E-05
24	GO:0005960: glycine cleavage complex	5.93E-05
25	GO:0031969: chloroplast membrane	1.04E-04
26	GO:0042651: thylakoid membrane	2.56E-04
27	GO:0015935: small ribosomal subunit	2.92E-04
28	GO:0009533: chloroplast stromal thylakoid	3.99E-04
29	GO:0009344: nitrite reductase complex [NAD(P)H]	4.21E-04
30	GO:0009547: plastid ribosome	4.21E-04
31	GO:0009782: photosystem I antenna complex	4.21E-04
32	GO:0043674: columella	4.21E-04
33	GO:0009522: photosystem I	6.18E-04
34	GO:0000427: plastid-encoded plastid RNA polymerase complex	9.10E-04
35	GO:0042170: plastid membrane	9.10E-04
36	GO:0009536: plastid	9.14E-04
37	GO:0000312: plastid small ribosomal subunit	1.68E-03
38	GO:0030076: light-harvesting complex	1.89E-03
39	GO:0042646: plastid nucleoid	2.14E-03
40	GO:0009517: PSII associated light-harvesting complex II	2.88E-03
41	GO:0055035: plastid thylakoid membrane	3.68E-03
42	GO:0016020: membrane	3.72E-03
43	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.56E-03
44	GO:0016363: nuclear matrix	5.49E-03
45	GO:0048046: apoplast	6.17E-03
46	GO:0042807: central vacuole	6.49E-03
47	GO:0009295: nucleoid	7.41E-03
48	GO:0009538: photosystem I reaction center	7.55E-03
49	GO:0030529: intracellular ribonucleoprotein complex	8.33E-03
50	GO:0009539: photosystem II reaction center	8.67E-03
51	GO:0005763: mitochondrial small ribosomal subunit	9.85E-03
52	GO:0022626: cytosolic ribosome	1.07E-02
53	GO:0032040: small-subunit processome	1.51E-02
54	GO:0009508: plastid chromosome	1.65E-02
55	GO:0071944: cell periphery	4.72E-02