Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G54350

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090706: specification of plant organ position0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0017038: protein import0.00E+00
4GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
5GO:0000372: Group I intron splicing0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
8GO:0048507: meristem development1.22E-05
9GO:0008152: metabolic process6.49E-05
10GO:0009913: epidermal cell differentiation1.13E-04
11GO:0008610: lipid biosynthetic process2.58E-04
12GO:0010450: inflorescence meristem growth2.70E-04
13GO:0019646: aerobic electron transport chain2.70E-04
14GO:0000476: maturation of 4.5S rRNA2.70E-04
15GO:0000967: rRNA 5'-end processing2.70E-04
16GO:0006824: cobalt ion transport2.70E-04
17GO:0051775: response to redox state2.70E-04
18GO:0015808: L-alanine transport2.70E-04
19GO:0043266: regulation of potassium ion transport2.70E-04
20GO:0010480: microsporocyte differentiation2.70E-04
21GO:0031338: regulation of vesicle fusion2.70E-04
22GO:0006723: cuticle hydrocarbon biosynthetic process2.70E-04
23GO:0000481: maturation of 5S rRNA2.70E-04
24GO:0042547: cell wall modification involved in multidimensional cell growth2.70E-04
25GO:2000021: regulation of ion homeostasis2.70E-04
26GO:0034628: 'de novo' NAD biosynthetic process from aspartate2.70E-04
27GO:0043609: regulation of carbon utilization2.70E-04
28GO:0010028: xanthophyll cycle2.70E-04
29GO:0034337: RNA folding2.70E-04
30GO:0071482: cellular response to light stimulus3.19E-04
31GO:0010206: photosystem II repair3.84E-04
32GO:0000373: Group II intron splicing3.84E-04
33GO:0010289: homogalacturonan biosynthetic process5.94E-04
34GO:0010270: photosystem II oxygen evolving complex assembly5.94E-04
35GO:0015804: neutral amino acid transport5.94E-04
36GO:0034470: ncRNA processing5.94E-04
37GO:0016560: protein import into peroxisome matrix, docking5.94E-04
38GO:1900871: chloroplast mRNA modification5.94E-04
39GO:0034755: iron ion transmembrane transport5.94E-04
40GO:0098712: L-glutamate import across plasma membrane5.94E-04
41GO:0016122: xanthophyll metabolic process5.94E-04
42GO:0006000: fructose metabolic process9.62E-04
43GO:0043447: alkane biosynthetic process9.62E-04
44GO:0006518: peptide metabolic process9.62E-04
45GO:0051176: positive regulation of sulfur metabolic process9.62E-04
46GO:0090630: activation of GTPase activity9.62E-04
47GO:0045165: cell fate commitment9.62E-04
48GO:0051639: actin filament network formation1.38E-03
49GO:0006107: oxaloacetate metabolic process1.38E-03
50GO:0006515: misfolded or incompletely synthesized protein catabolic process1.38E-03
51GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.38E-03
52GO:0016226: iron-sulfur cluster assembly1.62E-03
53GO:0051764: actin crosslink formation1.84E-03
54GO:0045727: positive regulation of translation1.84E-03
55GO:0015994: chlorophyll metabolic process1.84E-03
56GO:0031122: cytoplasmic microtubule organization1.84E-03
57GO:0006734: NADH metabolic process1.84E-03
58GO:0010021: amylopectin biosynthetic process1.84E-03
59GO:0010109: regulation of photosynthesis1.84E-03
60GO:0006364: rRNA processing1.94E-03
61GO:0042335: cuticle development2.24E-03
62GO:0009435: NAD biosynthetic process2.35E-03
63GO:0010438: cellular response to sulfur starvation2.35E-03
64GO:0010158: abaxial cell fate specification2.35E-03
65GO:0016120: carotene biosynthetic process2.35E-03
66GO:0048497: maintenance of floral organ identity2.35E-03
67GO:1902183: regulation of shoot apical meristem development2.35E-03
68GO:0010305: leaf vascular tissue pattern formation2.42E-03
69GO:0010256: endomembrane system organization2.90E-03
70GO:0006828: manganese ion transport2.90E-03
71GO:0018258: protein O-linked glycosylation via hydroxyproline2.90E-03
72GO:0009759: indole glucosinolate biosynthetic process2.90E-03
73GO:0006354: DNA-templated transcription, elongation2.90E-03
74GO:0010405: arabinogalactan protein metabolic process2.90E-03
75GO:0010304: PSII associated light-harvesting complex II catabolic process2.90E-03
76GO:0042549: photosystem II stabilization2.90E-03
77GO:0030163: protein catabolic process3.39E-03
78GO:0042372: phylloquinone biosynthetic process3.49E-03
79GO:0009942: longitudinal axis specification3.49E-03
80GO:0048280: vesicle fusion with Golgi apparatus3.49E-03
81GO:0009854: oxidative photosynthetic carbon pathway3.49E-03
82GO:0043090: amino acid import4.12E-03
83GO:0048437: floral organ development4.12E-03
84GO:0010196: nonphotochemical quenching4.12E-03
85GO:1900057: positive regulation of leaf senescence4.12E-03
86GO:0016126: sterol biosynthetic process4.30E-03
87GO:0048564: photosystem I assembly4.77E-03
88GO:0006605: protein targeting4.77E-03
89GO:0032508: DNA duplex unwinding4.77E-03
90GO:0010492: maintenance of shoot apical meristem identity4.77E-03
91GO:0015995: chlorophyll biosynthetic process5.06E-03
92GO:0032259: methylation5.26E-03
93GO:0006002: fructose 6-phosphate metabolic process5.47E-03
94GO:0032544: plastid translation5.47E-03
95GO:0010093: specification of floral organ identity5.47E-03
96GO:0006098: pentose-phosphate shunt6.20E-03
97GO:2000024: regulation of leaf development6.20E-03
98GO:0009060: aerobic respiration6.20E-03
99GO:0010205: photoinhibition6.96E-03
100GO:0006779: porphyrin-containing compound biosynthetic process6.96E-03
101GO:0009086: methionine biosynthetic process6.96E-03
102GO:0006896: Golgi to vacuole transport7.75E-03
103GO:0006782: protoporphyrinogen IX biosynthetic process7.75E-03
104GO:0019538: protein metabolic process7.75E-03
105GO:0006535: cysteine biosynthetic process from serine7.75E-03
106GO:0000038: very long-chain fatty acid metabolic process8.58E-03
107GO:0006816: calcium ion transport8.58E-03
108GO:0009773: photosynthetic electron transport in photosystem I8.58E-03
109GO:1903507: negative regulation of nucleic acid-templated transcription8.58E-03
110GO:0048229: gametophyte development8.58E-03
111GO:0016485: protein processing8.58E-03
112GO:0005983: starch catabolic process9.44E-03
113GO:0002213: defense response to insect9.44E-03
114GO:0006094: gluconeogenesis1.03E-02
115GO:0009767: photosynthetic electron transport chain1.03E-02
116GO:0030048: actin filament-based movement1.03E-02
117GO:0010102: lateral root morphogenesis1.03E-02
118GO:0006108: malate metabolic process1.03E-02
119GO:0018107: peptidyl-threonine phosphorylation1.03E-02
120GO:0009718: anthocyanin-containing compound biosynthetic process1.03E-02
121GO:0010075: regulation of meristem growth1.03E-02
122GO:0048768: root hair cell tip growth1.12E-02
123GO:0010207: photosystem II assembly1.12E-02
124GO:0009933: meristem structural organization1.12E-02
125GO:0009934: regulation of meristem structural organization1.12E-02
126GO:0055114: oxidation-reduction process1.13E-02
127GO:0000162: tryptophan biosynthetic process1.32E-02
128GO:0010025: wax biosynthetic process1.32E-02
129GO:0006636: unsaturated fatty acid biosynthetic process1.32E-02
130GO:0009416: response to light stimulus1.34E-02
131GO:0019344: cysteine biosynthetic process1.42E-02
132GO:0009944: polarity specification of adaxial/abaxial axis1.42E-02
133GO:0051017: actin filament bundle assembly1.42E-02
134GO:0016575: histone deacetylation1.52E-02
135GO:0061077: chaperone-mediated protein folding1.62E-02
136GO:0009814: defense response, incompatible interaction1.73E-02
137GO:2000022: regulation of jasmonic acid mediated signaling pathway1.73E-02
138GO:0080092: regulation of pollen tube growth1.73E-02
139GO:0018105: peptidyl-serine phosphorylation1.82E-02
140GO:0071369: cellular response to ethylene stimulus1.84E-02
141GO:0040007: growth1.84E-02
142GO:0042147: retrograde transport, endosome to Golgi2.07E-02
143GO:0048653: anther development2.19E-02
144GO:0042631: cellular response to water deprivation2.19E-02
145GO:0010051: xylem and phloem pattern formation2.19E-02
146GO:0006629: lipid metabolic process2.28E-02
147GO:0010154: fruit development2.31E-02
148GO:0009646: response to absence of light2.43E-02
149GO:0009753: response to jasmonic acid2.49E-02
150GO:0005975: carbohydrate metabolic process2.52E-02
151GO:0006623: protein targeting to vacuole2.55E-02
152GO:0048825: cotyledon development2.55E-02
153GO:0019252: starch biosynthetic process2.55E-02
154GO:0009790: embryo development2.59E-02
155GO:0006891: intra-Golgi vesicle-mediated transport2.68E-02
156GO:0006633: fatty acid biosynthetic process2.79E-02
157GO:0048235: pollen sperm cell differentiation2.81E-02
158GO:0010090: trichome morphogenesis2.94E-02
159GO:0007623: circadian rhythm3.06E-02
160GO:0071805: potassium ion transmembrane transport3.21E-02
161GO:0009739: response to gibberellin3.42E-02
162GO:0001666: response to hypoxia3.48E-02
163GO:0042128: nitrate assimilation3.77E-02
164GO:0006888: ER to Golgi vesicle-mediated transport3.91E-02
165GO:0009817: defense response to fungus, incompatible interaction4.21E-02
166GO:0009733: response to auxin4.49E-02
167GO:0006499: N-terminal protein myristoylation4.51E-02
168GO:0009910: negative regulation of flower development4.66E-02
169GO:0048527: lateral root development4.66E-02
170GO:0009631: cold acclimation4.66E-02
171GO:0009658: chloroplast organization4.72E-02
172GO:0042254: ribosome biogenesis4.80E-02
173GO:0035556: intracellular signal transduction4.95E-02
174GO:0009853: photorespiration4.97E-02
175GO:0016051: carbohydrate biosynthetic process4.97E-02
RankGO TermAdjusted P value
1GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0046422: violaxanthin de-epoxidase activity0.00E+00
4GO:0008987: quinolinate synthetase A activity0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
10GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
11GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
12GO:0043014: alpha-tubulin binding0.00E+00
13GO:0008465: glycerate dehydrogenase activity0.00E+00
14GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
15GO:0004506: squalene monooxygenase activity4.90E-05
16GO:0005528: FK506 binding8.75E-05
17GO:2001070: starch binding1.13E-04
18GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.56E-04
19GO:0050139: nicotinate-N-glucosyltransferase activity2.70E-04
20GO:0015194: L-serine transmembrane transporter activity2.70E-04
21GO:0004856: xylulokinase activity2.70E-04
22GO:0050308: sugar-phosphatase activity2.70E-04
23GO:0008568: microtubule-severing ATPase activity2.70E-04
24GO:0019203: carbohydrate phosphatase activity2.70E-04
25GO:0047150: betaine-homocysteine S-methyltransferase activity2.70E-04
26GO:0008746: NAD(P)+ transhydrogenase activity2.70E-04
27GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity5.94E-04
28GO:0004047: aminomethyltransferase activity5.94E-04
29GO:0033201: alpha-1,4-glucan synthase activity5.94E-04
30GO:0004312: fatty acid synthase activity5.94E-04
31GO:0019172: glyoxalase III activity5.94E-04
32GO:0015180: L-alanine transmembrane transporter activity5.94E-04
33GO:0050017: L-3-cyanoalanine synthase activity5.94E-04
34GO:0016868: intramolecular transferase activity, phosphotransferases5.94E-04
35GO:0008266: poly(U) RNA binding8.95E-04
36GO:0015462: ATPase-coupled protein transmembrane transporter activity9.62E-04
37GO:0004180: carboxypeptidase activity9.62E-04
38GO:0004373: glycogen (starch) synthase activity9.62E-04
39GO:0008253: 5'-nucleotidase activity9.62E-04
40GO:0004148: dihydrolipoyl dehydrogenase activity9.62E-04
41GO:0003955: NAD(P)H dehydrogenase (quinone) activity9.62E-04
42GO:0015193: L-proline transmembrane transporter activity9.62E-04
43GO:0016805: dipeptidase activity9.62E-04
44GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity9.62E-04
45GO:0015186: L-glutamine transmembrane transporter activity1.38E-03
46GO:0019201: nucleotide kinase activity1.38E-03
47GO:0015175: neutral amino acid transmembrane transporter activity1.38E-03
48GO:0048487: beta-tubulin binding1.38E-03
49GO:0004176: ATP-dependent peptidase activity1.48E-03
50GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.61E-03
51GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.84E-03
52GO:0005313: L-glutamate transmembrane transporter activity1.84E-03
53GO:0009011: starch synthase activity1.84E-03
54GO:0016787: hydrolase activity2.05E-03
55GO:0016773: phosphotransferase activity, alcohol group as acceptor2.35E-03
56GO:0017137: Rab GTPase binding2.35E-03
57GO:0050660: flavin adenine dinucleotide binding2.79E-03
58GO:1990714: hydroxyproline O-galactosyltransferase activity2.90E-03
59GO:0004332: fructose-bisphosphate aldolase activity2.90E-03
60GO:0004462: lactoylglutathione lyase activity2.90E-03
61GO:0042578: phosphoric ester hydrolase activity2.90E-03
62GO:0016615: malate dehydrogenase activity2.90E-03
63GO:0004124: cysteine synthase activity3.49E-03
64GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.49E-03
65GO:0004017: adenylate kinase activity3.49E-03
66GO:0030060: L-malate dehydrogenase activity3.49E-03
67GO:0004033: aldo-keto reductase (NADP) activity4.77E-03
68GO:0043022: ribosome binding4.77E-03
69GO:0008236: serine-type peptidase activity5.33E-03
70GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.47E-03
71GO:0004222: metalloendopeptidase activity6.19E-03
72GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.20E-03
73GO:0016491: oxidoreductase activity6.55E-03
74GO:0005381: iron ion transmembrane transporter activity6.96E-03
75GO:0005384: manganese ion transmembrane transporter activity6.96E-03
76GO:0008047: enzyme activator activity7.75E-03
77GO:0042802: identical protein binding8.25E-03
78GO:0005089: Rho guanyl-nucleotide exchange factor activity8.58E-03
79GO:0008168: methyltransferase activity1.01E-02
80GO:0004565: beta-galactosidase activity1.03E-02
81GO:0008081: phosphoric diester hydrolase activity1.03E-02
82GO:0004022: alcohol dehydrogenase (NAD) activity1.03E-02
83GO:0015293: symporter activity1.03E-02
84GO:0015095: magnesium ion transmembrane transporter activity1.03E-02
85GO:0003774: motor activity1.12E-02
86GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.32E-02
87GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.32E-02
88GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.32E-02
89GO:0003954: NADH dehydrogenase activity1.42E-02
90GO:0004407: histone deacetylase activity1.42E-02
91GO:0003714: transcription corepressor activity1.42E-02
92GO:0015079: potassium ion transmembrane transporter activity1.52E-02
93GO:0004707: MAP kinase activity1.62E-02
94GO:0033612: receptor serine/threonine kinase binding1.62E-02
95GO:0019706: protein-cysteine S-palmitoyltransferase activity1.62E-02
96GO:0003779: actin binding1.72E-02
97GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.73E-02
98GO:0030570: pectate lyase activity1.84E-02
99GO:0050662: coenzyme binding2.43E-02
100GO:0004252: serine-type endopeptidase activity2.46E-02
101GO:0048038: quinone binding2.68E-02
102GO:0051015: actin filament binding2.94E-02
103GO:0008017: microtubule binding3.20E-02
104GO:0008237: metallopeptidase activity3.21E-02
105GO:0005509: calcium ion binding3.38E-02
106GO:0008194: UDP-glycosyltransferase activity3.42E-02
107GO:0003743: translation initiation factor activity3.57E-02
108GO:0046872: metal ion binding3.71E-02
109GO:0009931: calcium-dependent protein serine/threonine kinase activity3.77E-02
110GO:0004721: phosphoprotein phosphatase activity3.91E-02
111GO:0004683: calmodulin-dependent protein kinase activity3.91E-02
112GO:0003824: catalytic activity4.35E-02
113GO:0015238: drug transmembrane transporter activity4.36E-02
114GO:0005096: GTPase activator activity4.36E-02
115GO:0005215: transporter activity4.39E-02
116GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.66E-02
117GO:0050897: cobalt ion binding4.66E-02
118GO:0016788: hydrolase activity, acting on ester bonds4.80E-02
119GO:0003746: translation elongation factor activity4.97E-02
RankGO TermAdjusted P value
1GO:0043233: organelle lumen0.00E+00
2GO:0009507: chloroplast1.82E-22
3GO:0009570: chloroplast stroma3.36E-12
4GO:0009534: chloroplast thylakoid6.17E-12
5GO:0009941: chloroplast envelope2.35E-08
6GO:0009535: chloroplast thylakoid membrane4.77E-08
7GO:0010287: plastoglobule8.07E-06
8GO:0009543: chloroplast thylakoid lumen9.41E-06
9GO:0009579: thylakoid1.13E-05
10GO:0000428: DNA-directed RNA polymerase complex2.70E-04
11GO:0009344: nitrite reductase complex [NAD(P)H]2.70E-04
12GO:0031304: intrinsic component of mitochondrial inner membrane5.94E-04
13GO:0030095: chloroplast photosystem II8.95E-04
14GO:0005782: peroxisomal matrix9.62E-04
15GO:0031977: thylakoid lumen1.20E-03
16GO:0032432: actin filament bundle1.38E-03
17GO:0048046: apoplast2.68E-03
18GO:0009533: chloroplast stromal thylakoid4.12E-03
19GO:0030529: intracellular ribonucleoprotein complex4.30E-03
20GO:0012507: ER to Golgi transport vesicle membrane4.77E-03
21GO:0009501: amyloplast4.77E-03
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.20E-03
23GO:0008180: COP9 signalosome6.20E-03
24GO:0055028: cortical microtubule7.75E-03
25GO:0016459: myosin complex7.75E-03
26GO:0005884: actin filament8.58E-03
27GO:0032040: small-subunit processome9.44E-03
28GO:0030659: cytoplasmic vesicle membrane1.12E-02
29GO:0005886: plasma membrane1.28E-02
30GO:0031969: chloroplast membrane1.40E-02
31GO:0009654: photosystem II oxygen evolving complex1.52E-02
32GO:0042651: thylakoid membrane1.52E-02
33GO:0009532: plastid stroma1.62E-02
34GO:0019898: extrinsic component of membrane2.55E-02
35GO:0009705: plant-type vacuole membrane3.06E-02
36GO:0009295: nucleoid3.21E-02
37GO:0019005: SCF ubiquitin ligase complex4.21E-02
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Gene type



Gene DE type