co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042593: glucose homeostasis	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0080170: hydrogen peroxide transmembrane transport	2.69E-06
5	GO:0034220: ion transmembrane transport	1.34E-05
6	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	7.23E-05
7	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	7.23E-05
8	GO:0042547: cell wall modification involved in multidimensional cell growth	7.23E-05
9	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.74E-04
10	GO:0006412: translation	1.80E-04
11	GO:0006833: water transport	1.85E-04
12	GO:0006000: fructose metabolic process	2.93E-04
13	GO:0006013: mannose metabolic process	2.93E-04
14	GO:0045493: xylan catabolic process	2.93E-04
15	GO:0051513: regulation of monopolar cell growth	4.23E-04
16	GO:2001141: regulation of RNA biosynthetic process	4.23E-04
17	GO:1902476: chloride transmembrane transport	4.23E-04
18	GO:0015994: chlorophyll metabolic process	5.65E-04
19	GO:0030104: water homeostasis	5.65E-04
20	GO:0009735: response to cytokinin	7.30E-04
21	GO:0010411: xyloglucan metabolic process	8.59E-04
22	GO:0042549: photosystem II stabilization	8.73E-04
23	GO:0032973: amino acid export	8.73E-04
24	GO:1902456: regulation of stomatal opening	8.73E-04
25	GO:0006810: transport	9.70E-04
26	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.04E-03
27	GO:0042254: ribosome biogenesis	1.08E-03
28	GO:0043090: amino acid import	1.21E-03
29	GO:0030497: fatty acid elongation	1.21E-03
30	GO:0050829: defense response to Gram-negative bacterium	1.21E-03
31	GO:0006821: chloride transport	1.21E-03
32	GO:0051510: regulation of unidimensional cell growth	1.21E-03
33	GO:0006002: fructose 6-phosphate metabolic process	1.59E-03
34	GO:0071482: cellular response to light stimulus	1.59E-03
35	GO:0010206: photosystem II repair	1.80E-03
36	GO:0080144: amino acid homeostasis	1.80E-03
37	GO:0009299: mRNA transcription	2.23E-03
38	GO:0010015: root morphogenesis	2.46E-03
39	GO:0000038: very long-chain fatty acid metabolic process	2.46E-03
40	GO:0009698: phenylpropanoid metabolic process	2.46E-03
41	GO:0006352: DNA-templated transcription, initiation	2.46E-03
42	GO:0009750: response to fructose	2.46E-03
43	GO:0005983: starch catabolic process	2.70E-03
44	GO:0015706: nitrate transport	2.70E-03
45	GO:0009725: response to hormone	2.94E-03
46	GO:0006094: gluconeogenesis	2.94E-03
47	GO:0009767: photosynthetic electron transport chain	2.94E-03
48	GO:0005986: sucrose biosynthetic process	2.94E-03
49	GO:0009742: brassinosteroid mediated signaling pathway	3.03E-03
50	GO:0010207: photosystem II assembly	3.19E-03
51	GO:0010167: response to nitrate	3.44E-03
52	GO:0010030: positive regulation of seed germination	3.44E-03
53	GO:0010025: wax biosynthetic process	3.71E-03
54	GO:0035428: hexose transmembrane transport	4.83E-03
55	GO:0006730: one-carbon metabolic process	4.83E-03
56	GO:0009814: defense response, incompatible interaction	4.83E-03
57	GO:0045490: pectin catabolic process	4.91E-03
58	GO:0006284: base-excision repair	5.43E-03
59	GO:0042335: cuticle development	6.05E-03
60	GO:0000413: protein peptidyl-prolyl isomerization	6.05E-03
61	GO:0010087: phloem or xylem histogenesis	6.05E-03
62	GO:0009741: response to brassinosteroid	6.38E-03
63	GO:0046323: glucose import	6.38E-03
64	GO:0009791: post-embryonic development	7.04E-03
65	GO:0009826: unidimensional cell growth	7.31E-03
66	GO:0002229: defense response to oomycetes	7.38E-03
67	GO:0000302: response to reactive oxygen species	7.38E-03
68	GO:0009658: chloroplast organization	7.59E-03
69	GO:0030163: protein catabolic process	8.07E-03
70	GO:0071805: potassium ion transmembrane transport	8.79E-03
71	GO:0015979: photosynthesis	1.08E-02
72	GO:0016311: dephosphorylation	1.11E-02
73	GO:0071555: cell wall organization	1.13E-02
74	GO:0009637: response to blue light	1.36E-02
75	GO:0034599: cellular response to oxidative stress	1.40E-02
76	GO:0009651: response to salt stress	1.51E-02
77	GO:0010114: response to red light	1.63E-02
78	GO:0042546: cell wall biogenesis	1.67E-02
79	GO:0006813: potassium ion transport	2.01E-02
80	GO:0009740: gibberellic acid mediated signaling pathway	2.47E-02
81	GO:0009416: response to light stimulus	2.48E-02
82	GO:0042545: cell wall modification	2.53E-02
83	GO:0055085: transmembrane transport	3.14E-02
84	GO:0006457: protein folding	3.21E-02
85	GO:0042744: hydrogen peroxide catabolic process	3.32E-02
86	GO:0006633: fatty acid biosynthetic process	3.56E-02
87	GO:0040008: regulation of growth	3.69E-02
88	GO:0009451: RNA modification	3.87E-02
89	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.13E-02
90	GO:0006508: proteolysis	4.62E-02
91	GO:0009414: response to water deprivation	4.87E-02
92	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	4.92E-02
93	GO:0042742: defense response to bacterium	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
2	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0019843: rRNA binding	1.25E-06
6	GO:0015250: water channel activity	3.94E-05
7	GO:0003735: structural constituent of ribosome	6.80E-05
8	GO:0009671: nitrate:proton symporter activity	7.23E-05
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.55E-04
10	GO:0043425: bHLH transcription factor binding	1.74E-04
11	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.74E-04
12	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.74E-04
13	GO:0008967: phosphoglycolate phosphatase activity	1.74E-04
14	GO:0047746: chlorophyllase activity	1.74E-04
15	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.74E-04
16	GO:0016987: sigma factor activity	5.65E-04
17	GO:0009044: xylan 1,4-beta-xylosidase activity	5.65E-04
18	GO:0005253: anion channel activity	5.65E-04
19	GO:0046556: alpha-L-arabinofuranosidase activity	5.65E-04
20	GO:0001053: plastid sigma factor activity	5.65E-04
21	GO:0008725: DNA-3-methyladenine glycosylase activity	7.14E-04
22	GO:0009922: fatty acid elongase activity	7.14E-04
23	GO:0004130: cytochrome-c peroxidase activity	8.73E-04
24	GO:0005247: voltage-gated chloride channel activity	8.73E-04
25	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.04E-03
26	GO:0004559: alpha-mannosidase activity	1.04E-03
27	GO:0015112: nitrate transmembrane transporter activity	2.01E-03
28	GO:0004565: beta-galactosidase activity	2.94E-03
29	GO:0008146: sulfotransferase activity	3.44E-03
30	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.71E-03
31	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.71E-03
32	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.71E-03
33	GO:0004252: serine-type endopeptidase activity	3.96E-03
34	GO:0005528: FK506 binding	3.98E-03
35	GO:0015079: potassium ion transmembrane transporter activity	4.26E-03
36	GO:0030570: pectate lyase activity	5.13E-03
37	GO:0005355: glucose transmembrane transporter activity	6.70E-03
38	GO:0016762: xyloglucan:xyloglucosyl transferase activity	7.38E-03
39	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.07E-02
40	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	1.11E-02
41	GO:0008236: serine-type peptidase activity	1.11E-02
42	GO:0003993: acid phosphatase activity	1.40E-02
43	GO:0000987: core promoter proximal region sequence-specific DNA binding	1.40E-02
44	GO:0004185: serine-type carboxypeptidase activity	1.63E-02
45	GO:0046983: protein dimerization activity	1.64E-02
46	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.01E-02
47	GO:0015171: amino acid transmembrane transporter activity	2.16E-02
48	GO:0031625: ubiquitin protein ligase binding	2.16E-02
49	GO:0045330: aspartyl esterase activity	2.16E-02
50	GO:0004650: polygalacturonase activity	2.42E-02
51	GO:0030599: pectinesterase activity	2.47E-02
52	GO:0016746: transferase activity, transferring acyl groups	2.64E-02
53	GO:0016829: lyase activity	3.20E-02
54	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.27E-02
55	GO:0030246: carbohydrate binding	3.33E-02
56	GO:0015144: carbohydrate transmembrane transporter activity	3.44E-02
57	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.63E-02
58	GO:0046910: pectinesterase inhibitor activity	3.63E-02
59	GO:0005351: sugar:proton symporter activity	3.75E-02
60	GO:0005509: calcium ion binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	1.83E-13
4	GO:0009543: chloroplast thylakoid lumen	8.15E-10
5	GO:0009534: chloroplast thylakoid	4.67E-09
6	GO:0009535: chloroplast thylakoid membrane	1.16E-07
7	GO:0009570: chloroplast stroma	2.10E-07
8	GO:0009941: chloroplast envelope	2.41E-05
9	GO:0043674: columella	7.23E-05
10	GO:0009344: nitrite reductase complex [NAD(P)H]	7.23E-05
11	GO:0005840: ribosome	8.98E-05
12	GO:0031977: thylakoid lumen	1.10E-04
13	GO:0009654: photosystem II oxygen evolving complex	2.30E-04
14	GO:0042646: plastid nucleoid	4.23E-04
15	GO:0019898: extrinsic component of membrane	4.81E-04
16	GO:0009705: plant-type vacuole membrane	6.15E-04
17	GO:0009505: plant-type cell wall	7.37E-04
18	GO:0005773: vacuole	7.51E-04
19	GO:0034707: chloride channel complex	8.73E-04
20	GO:0016363: nuclear matrix	1.04E-03
21	GO:0009579: thylakoid	1.09E-03
22	GO:0009533: chloroplast stromal thylakoid	1.21E-03
23	GO:0042807: central vacuole	1.21E-03
24	GO:0000311: plastid large ribosomal subunit	2.70E-03
25	GO:0030095: chloroplast photosystem II	3.19E-03
26	GO:0000312: plastid small ribosomal subunit	3.19E-03
27	GO:0005887: integral component of plasma membrane	3.30E-03
28	GO:0015935: small ribosomal subunit	4.54E-03
29	GO:0048046: apoplast	4.73E-03
30	GO:0005618: cell wall	5.49E-03
31	GO:0071944: cell periphery	8.07E-03
32	GO:0031225: anchored component of membrane	8.15E-03
33	GO:0016020: membrane	8.69E-03
34	GO:0031969: chloroplast membrane	9.41E-03
35	GO:0015934: large ribosomal subunit	1.27E-02
36	GO:0005774: vacuolar membrane	1.58E-02
37	GO:0009706: chloroplast inner membrane	2.58E-02
38	GO:0005576: extracellular region	3.05E-02
39	GO:0009506: plasmodesma	4.28E-02
40	GO:0022627: cytosolic small ribosomal subunit	4.65E-02
41	GO:0046658: anchored component of plasma membrane	4.65E-02