co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
2	GO:1901698: response to nitrogen compound	0.00E+00
3	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0010583: response to cyclopentenone	1.10E-06
6	GO:0015995: chlorophyll biosynthetic process	3.87E-06
7	GO:0042335: cuticle development	1.38E-05
8	GO:0010027: thylakoid membrane organization	5.21E-05
9	GO:0010444: guard mother cell differentiation	2.27E-04
10	GO:0070509: calcium ion import	2.89E-04
11	GO:0007263: nitric oxide mediated signal transduction	2.89E-04
12	GO:0046520: sphingoid biosynthetic process	2.89E-04
13	GO:0006824: cobalt ion transport	2.89E-04
14	GO:0006723: cuticle hydrocarbon biosynthetic process	2.89E-04
15	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	2.89E-04
16	GO:0071588: hydrogen peroxide mediated signaling pathway	2.89E-04
17	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.89E-04
18	GO:0060627: regulation of vesicle-mediated transport	2.89E-04
19	GO:0006783: heme biosynthetic process	4.25E-04
20	GO:0006782: protoporphyrinogen IX biosynthetic process	5.88E-04
21	GO:0006695: cholesterol biosynthetic process	6.34E-04
22	GO:0010115: regulation of abscisic acid biosynthetic process	6.34E-04
23	GO:0034755: iron ion transmembrane transport	6.34E-04
24	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	6.34E-04
25	GO:0000038: very long-chain fatty acid metabolic process	6.77E-04
26	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.50E-04
27	GO:0009735: response to cytokinin	9.72E-04
28	GO:0043447: alkane biosynthetic process	1.03E-03
29	GO:0006013: mannose metabolic process	1.03E-03
30	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.03E-03
31	GO:0015840: urea transport	1.03E-03
32	GO:0071705: nitrogen compound transport	1.03E-03
33	GO:0051176: positive regulation of sulfur metabolic process	1.03E-03
34	GO:0010025: wax biosynthetic process	1.22E-03
35	GO:0006833: water transport	1.22E-03
36	GO:0005992: trehalose biosynthetic process	1.35E-03
37	GO:0010731: protein glutathionylation	1.47E-03
38	GO:0006424: glutamyl-tRNA aminoacylation	1.47E-03
39	GO:2001141: regulation of RNA biosynthetic process	1.47E-03
40	GO:0051639: actin filament network formation	1.47E-03
41	GO:0034059: response to anoxia	1.47E-03
42	GO:0016226: iron-sulfur cluster assembly	1.79E-03
43	GO:0071249: cellular response to nitrate	1.97E-03
44	GO:0006183: GTP biosynthetic process	1.97E-03
45	GO:0000919: cell plate assembly	1.97E-03
46	GO:0051764: actin crosslink formation	1.97E-03
47	GO:0009306: protein secretion	2.12E-03
48	GO:0009826: unidimensional cell growth	2.47E-03
49	GO:0000271: polysaccharide biosynthetic process	2.48E-03
50	GO:0009247: glycolipid biosynthetic process	2.52E-03
51	GO:0032543: mitochondrial translation	2.52E-03
52	GO:0045038: protein import into chloroplast thylakoid membrane	2.52E-03
53	GO:0009435: NAD biosynthetic process	2.52E-03
54	GO:0009658: chloroplast organization	2.61E-03
55	GO:0042254: ribosome biogenesis	2.69E-03
56	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.11E-03
57	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.11E-03
58	GO:0006561: proline biosynthetic process	3.11E-03
59	GO:0010405: arabinogalactan protein metabolic process	3.11E-03
60	GO:0006751: glutathione catabolic process	3.11E-03
61	GO:0016132: brassinosteroid biosynthetic process	3.30E-03
62	GO:0009742: brassinosteroid mediated signaling pathway	3.72E-03
63	GO:0042372: phylloquinone biosynthetic process	3.74E-03
64	GO:0006694: steroid biosynthetic process	3.74E-03
65	GO:0009854: oxidative photosynthetic carbon pathway	3.74E-03
66	GO:0010019: chloroplast-nucleus signaling pathway	3.74E-03
67	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.74E-03
68	GO:0030497: fatty acid elongation	4.41E-03
69	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.41E-03
70	GO:0071669: plant-type cell wall organization or biogenesis	4.41E-03
71	GO:0050829: defense response to Gram-negative bacterium	4.41E-03
72	GO:0051510: regulation of unidimensional cell growth	4.41E-03
73	GO:0009610: response to symbiotic fungus	4.41E-03
74	GO:0009395: phospholipid catabolic process	4.41E-03
75	GO:0071555: cell wall organization	4.67E-03
76	GO:0016126: sterol biosynthetic process	4.76E-03
77	GO:0008610: lipid biosynthetic process	5.12E-03
78	GO:0006402: mRNA catabolic process	5.12E-03
79	GO:0009690: cytokinin metabolic process	5.12E-03
80	GO:0006605: protein targeting	5.12E-03
81	GO:0019375: galactolipid biosynthetic process	5.12E-03
82	GO:0007155: cell adhesion	5.12E-03
83	GO:0032544: plastid translation	5.87E-03
84	GO:0009808: lignin metabolic process	5.87E-03
85	GO:0009932: cell tip growth	5.87E-03
86	GO:0071482: cellular response to light stimulus	5.87E-03
87	GO:0006633: fatty acid biosynthetic process	6.14E-03
88	GO:0030244: cellulose biosynthetic process	6.21E-03
89	GO:0000160: phosphorelay signal transduction system	6.53E-03
90	GO:0009051: pentose-phosphate shunt, oxidative branch	6.65E-03
91	GO:0045337: farnesyl diphosphate biosynthetic process	6.65E-03
92	GO:0010206: photosystem II repair	6.65E-03
93	GO:0033384: geranyl diphosphate biosynthetic process	6.65E-03
94	GO:0000373: Group II intron splicing	6.65E-03
95	GO:0009060: aerobic respiration	6.65E-03
96	GO:0006779: porphyrin-containing compound biosynthetic process	7.48E-03
97	GO:0009870: defense response signaling pathway, resistance gene-dependent	8.33E-03
98	GO:0006535: cysteine biosynthetic process from serine	8.33E-03
99	GO:0009688: abscisic acid biosynthetic process	8.33E-03
100	GO:0009073: aromatic amino acid family biosynthetic process	9.22E-03
101	GO:0006415: translational termination	9.22E-03
102	GO:0006352: DNA-templated transcription, initiation	9.22E-03
103	GO:0009750: response to fructose	9.22E-03
104	GO:0015706: nitrate transport	1.01E-02
105	GO:0042546: cell wall biogenesis	1.06E-02
106	GO:0030048: actin filament-based movement	1.11E-02
107	GO:0006006: glucose metabolic process	1.11E-02
108	GO:2000028: regulation of photoperiodism, flowering	1.11E-02
109	GO:0030036: actin cytoskeleton organization	1.11E-02
110	GO:0050826: response to freezing	1.11E-02
111	GO:0009718: anthocyanin-containing compound biosynthetic process	1.11E-02
112	GO:0010167: response to nitrate	1.31E-02
113	GO:0010030: positive regulation of seed germination	1.31E-02
114	GO:0009736: cytokinin-activated signaling pathway	1.38E-02
115	GO:0007049: cell cycle	1.39E-02
116	GO:0009414: response to water deprivation	1.42E-02
117	GO:0006857: oligopeptide transport	1.47E-02
118	GO:0051017: actin filament bundle assembly	1.52E-02
119	GO:0019344: cysteine biosynthetic process	1.52E-02
120	GO:0009416: response to light stimulus	1.56E-02
121	GO:0007017: microtubule-based process	1.63E-02
122	GO:0009626: plant-type hypersensitive response	1.74E-02
123	GO:0042545: cell wall modification	1.90E-02
124	GO:0045454: cell redox homeostasis	2.00E-02
125	GO:0006412: translation	2.07E-02
126	GO:0051726: regulation of cell cycle	2.08E-02
127	GO:0006284: base-excision repair	2.10E-02
128	GO:0019722: calcium-mediated signaling	2.10E-02
129	GO:0042127: regulation of cell proliferation	2.10E-02
130	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.23E-02
131	GO:0042631: cellular response to water deprivation	2.35E-02
132	GO:0042391: regulation of membrane potential	2.35E-02
133	GO:0034220: ion transmembrane transport	2.35E-02
134	GO:0000413: protein peptidyl-prolyl isomerization	2.35E-02
135	GO:0045489: pectin biosynthetic process	2.48E-02
136	GO:0010305: leaf vascular tissue pattern formation	2.48E-02
137	GO:0010182: sugar mediated signaling pathway	2.48E-02
138	GO:0009741: response to brassinosteroid	2.48E-02
139	GO:0009791: post-embryonic development	2.75E-02
140	GO:0009790: embryo development	2.87E-02
141	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.88E-02
142	GO:0071554: cell wall organization or biogenesis	2.88E-02
143	GO:0002229: defense response to oomycetes	2.88E-02
144	GO:0000302: response to reactive oxygen species	2.88E-02
145	GO:0048235: pollen sperm cell differentiation	3.02E-02
146	GO:0032502: developmental process	3.02E-02
147	GO:0030163: protein catabolic process	3.16E-02
148	GO:0009567: double fertilization forming a zygote and endosperm	3.31E-02
149	GO:0007623: circadian rhythm	3.39E-02
150	GO:0045490: pectin catabolic process	3.39E-02
151	GO:0007267: cell-cell signaling	3.45E-02
152	GO:0042128: nitrate assimilation	4.05E-02
153	GO:0010411: xyloglucan metabolic process	4.21E-02
154	GO:0016311: dephosphorylation	4.37E-02
155	GO:0009832: plant-type cell wall biogenesis	4.69E-02
156	GO:0009834: plant-type secondary cell wall biogenesis	4.85E-02
157	GO:0009407: toxin catabolic process	4.85E-02
158	GO:0006468: protein phosphorylation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
2	GO:0008987: quinolinate synthetase A activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0008887: glycerate kinase activity	0.00E+00
5	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
6	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
7	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0050614: delta24-sterol reductase activity	0.00E+00
10	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
11	GO:0016851: magnesium chelatase activity	3.07E-05
12	GO:0019843: rRNA binding	1.27E-04
13	GO:0051753: mannan synthase activity	1.74E-04
14	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.89E-04
15	GO:0004655: porphobilinogen synthase activity	2.89E-04
16	GO:0009374: biotin binding	2.89E-04
17	GO:0004853: uroporphyrinogen decarboxylase activity	2.89E-04
18	GO:0015200: methylammonium transmembrane transporter activity	2.89E-04
19	GO:0004328: formamidase activity	2.89E-04
20	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.89E-04
21	GO:0000248: C-5 sterol desaturase activity	2.89E-04
22	GO:0000170: sphingosine hydroxylase activity	2.89E-04
23	GO:0004805: trehalose-phosphatase activity	5.88E-04
24	GO:0042284: sphingolipid delta-4 desaturase activity	6.34E-04
25	GO:0003839: gamma-glutamylcyclotransferase activity	6.34E-04
26	GO:0003938: IMP dehydrogenase activity	6.34E-04
27	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	6.34E-04
28	GO:0004148: dihydrolipoyl dehydrogenase activity	1.03E-03
29	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.03E-03
30	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.22E-03
31	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.22E-03
32	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.22E-03
33	GO:0035250: UDP-galactosyltransferase activity	1.47E-03
34	GO:0016149: translation release factor activity, codon specific	1.47E-03
35	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.47E-03
36	GO:0001872: (1->3)-beta-D-glucan binding	1.47E-03
37	GO:0016987: sigma factor activity	1.97E-03
38	GO:0004506: squalene monooxygenase activity	1.97E-03
39	GO:0046527: glucosyltransferase activity	1.97E-03
40	GO:0015204: urea transmembrane transporter activity	1.97E-03
41	GO:0001053: plastid sigma factor activity	1.97E-03
42	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.97E-03
43	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.97E-03
44	GO:0009922: fatty acid elongase activity	2.52E-03
45	GO:0003989: acetyl-CoA carboxylase activity	2.52E-03
46	GO:0008725: DNA-3-methyladenine glycosylase activity	2.52E-03
47	GO:0005516: calmodulin binding	2.60E-03
48	GO:0004130: cytochrome-c peroxidase activity	3.11E-03
49	GO:0035673: oligopeptide transmembrane transporter activity	3.11E-03
50	GO:0016208: AMP binding	3.11E-03
51	GO:0016688: L-ascorbate peroxidase activity	3.11E-03
52	GO:0008519: ammonium transmembrane transporter activity	3.11E-03
53	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.11E-03
54	GO:0005261: cation channel activity	3.74E-03
55	GO:0004559: alpha-mannosidase activity	3.74E-03
56	GO:0005242: inward rectifier potassium channel activity	3.74E-03
57	GO:0004124: cysteine synthase activity	3.74E-03
58	GO:0051920: peroxiredoxin activity	3.74E-03
59	GO:0000156: phosphorelay response regulator activity	3.75E-03
60	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.24E-03
61	GO:0005200: structural constituent of cytoskeleton	4.24E-03
62	GO:0015250: water channel activity	4.76E-03
63	GO:0008312: 7S RNA binding	5.12E-03
64	GO:0004033: aldo-keto reductase (NADP) activity	5.12E-03
65	GO:0016209: antioxidant activity	5.12E-03
66	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.21E-03
67	GO:0003735: structural constituent of ribosome	6.36E-03
68	GO:0004337: geranyltranstransferase activity	6.65E-03
69	GO:0003747: translation release factor activity	6.65E-03
70	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	6.85E-03
71	GO:0005381: iron ion transmembrane transporter activity	7.48E-03
72	GO:0003993: acid phosphatase activity	8.24E-03
73	GO:0008047: enzyme activator activity	8.33E-03
74	GO:0004161: dimethylallyltranstransferase activity	9.22E-03
75	GO:0004364: glutathione transferase activity	9.77E-03
76	GO:0015198: oligopeptide transporter activity	1.01E-02
77	GO:0008289: lipid binding	1.08E-02
78	GO:0004022: alcohol dehydrogenase (NAD) activity	1.11E-02
79	GO:0031072: heat shock protein binding	1.11E-02
80	GO:0005262: calcium channel activity	1.11E-02
81	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.19E-02
82	GO:0003774: motor activity	1.21E-02
83	GO:0016788: hydrolase activity, acting on ester bonds	1.24E-02
84	GO:0030552: cAMP binding	1.31E-02
85	GO:0030553: cGMP binding	1.31E-02
86	GO:0005528: FK506 binding	1.52E-02
87	GO:0045330: aspartyl esterase activity	1.52E-02
88	GO:0051536: iron-sulfur cluster binding	1.52E-02
89	GO:0005216: ion channel activity	1.63E-02
90	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.75E-02
91	GO:0004650: polygalacturonase activity	1.79E-02
92	GO:0052689: carboxylic ester hydrolase activity	1.80E-02
93	GO:0030599: pectinesterase activity	1.85E-02
94	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.86E-02
95	GO:0016760: cellulose synthase (UDP-forming) activity	1.98E-02
96	GO:0003756: protein disulfide isomerase activity	2.10E-02
97	GO:0008514: organic anion transmembrane transporter activity	2.10E-02
98	GO:0030551: cyclic nucleotide binding	2.35E-02
99	GO:0016491: oxidoreductase activity	2.36E-02
100	GO:0016758: transferase activity, transferring hexosyl groups	2.39E-02
101	GO:0003924: GTPase activity	2.60E-02
102	GO:0010181: FMN binding	2.61E-02
103	GO:0019901: protein kinase binding	2.75E-02
104	GO:0004672: protein kinase activity	2.84E-02
105	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.88E-02
106	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.16E-02
107	GO:0051015: actin filament binding	3.16E-02
108	GO:0016597: amino acid binding	3.60E-02
109	GO:0016413: O-acetyltransferase activity	3.60E-02
110	GO:0030247: polysaccharide binding	4.21E-02
111	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.21E-02
112	GO:0008236: serine-type peptidase activity	4.37E-02
113	GO:0005096: GTPase activator activity	4.69E-02
114	GO:0004222: metalloendopeptidase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009570: chloroplast stroma	1.71E-13
3	GO:0009941: chloroplast envelope	1.21E-09
4	GO:0031225: anchored component of membrane	9.79E-08
5	GO:0009507: chloroplast	1.13E-07
6	GO:0046658: anchored component of plasma membrane	6.50E-06
7	GO:0009505: plant-type cell wall	8.55E-06
8	GO:0010007: magnesium chelatase complex	1.37E-05
9	GO:0009295: nucleoid	4.16E-05
10	GO:0009533: chloroplast stromal thylakoid	2.27E-04
11	GO:0005886: plasma membrane	2.53E-04
12	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.89E-04
13	GO:0005576: extracellular region	3.65E-04
14	GO:0009534: chloroplast thylakoid	4.55E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	6.34E-04
16	GO:0009508: plastid chromosome	8.76E-04
17	GO:0009535: chloroplast thylakoid membrane	1.01E-03
18	GO:0009509: chromoplast	1.03E-03
19	GO:0009317: acetyl-CoA carboxylase complex	1.03E-03
20	GO:0032432: actin filament bundle	1.47E-03
21	GO:0005840: ribosome	1.57E-03
22	GO:0005618: cell wall	1.66E-03
23	GO:0009506: plasmodesma	1.96E-03
24	GO:0048046: apoplast	3.50E-03
25	GO:0042807: central vacuole	4.41E-03
26	GO:0009543: chloroplast thylakoid lumen	4.60E-03
27	GO:0030529: intracellular ribonucleoprotein complex	4.76E-03
28	GO:0005794: Golgi apparatus	5.44E-03
29	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.87E-03
30	GO:0000326: protein storage vacuole	5.87E-03
31	GO:0045298: tubulin complex	6.65E-03
32	GO:0009536: plastid	6.97E-03
33	GO:0005774: vacuolar membrane	8.12E-03
34	GO:0016459: myosin complex	8.33E-03
35	GO:0005773: vacuole	9.08E-03
36	GO:0005884: actin filament	9.22E-03
37	GO:0031977: thylakoid lumen	9.37E-03
38	GO:0000311: plastid large ribosomal subunit	1.01E-02
39	GO:0005887: integral component of plasma membrane	1.04E-02
40	GO:0000312: plastid small ribosomal subunit	1.21E-02
41	GO:0030659: cytoplasmic vesicle membrane	1.21E-02
42	GO:0016020: membrane	1.79E-02
43	GO:0009579: thylakoid	2.04E-02
44	GO:0000139: Golgi membrane	2.48E-02
45	GO:0071944: cell periphery	3.16E-02
46	GO:0005778: peroxisomal membrane	3.45E-02
47	GO:0016021: integral component of membrane	3.50E-02