GO Enrichment Analysis of Co-expressed Genes with
AT1G53670
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0015994: chlorophyll metabolic process | 1.51E-05 |
| 4 | GO:0006546: glycine catabolic process | 1.51E-05 |
| 5 | GO:0000481: maturation of 5S rRNA | 1.35E-04 |
| 6 | GO:0034337: RNA folding | 1.35E-04 |
| 7 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.35E-04 |
| 8 | GO:0006824: cobalt ion transport | 1.35E-04 |
| 9 | GO:0015995: chlorophyll biosynthetic process | 1.76E-04 |
| 10 | GO:0009773: photosynthetic electron transport in photosystem I | 2.34E-04 |
| 11 | GO:0008152: metabolic process | 2.72E-04 |
| 12 | GO:0016122: xanthophyll metabolic process | 3.11E-04 |
| 13 | GO:0080151: positive regulation of salicylic acid mediated signaling pathway | 3.11E-04 |
| 14 | GO:0006695: cholesterol biosynthetic process | 3.11E-04 |
| 15 | GO:0009915: phloem sucrose loading | 3.11E-04 |
| 16 | GO:0034755: iron ion transmembrane transport | 3.11E-04 |
| 17 | GO:0010115: regulation of abscisic acid biosynthetic process | 3.11E-04 |
| 18 | GO:0010207: photosystem II assembly | 3.49E-04 |
| 19 | GO:0009644: response to high light intensity | 4.34E-04 |
| 20 | GO:0006013: mannose metabolic process | 5.13E-04 |
| 21 | GO:0006518: peptide metabolic process | 5.13E-04 |
| 22 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 7.34E-04 |
| 23 | GO:0010037: response to carbon dioxide | 9.73E-04 |
| 24 | GO:0015976: carbon utilization | 9.73E-04 |
| 25 | GO:0019464: glycine decarboxylation via glycine cleavage system | 9.73E-04 |
| 26 | GO:0045727: positive regulation of translation | 9.73E-04 |
| 27 | GO:2000122: negative regulation of stomatal complex development | 9.73E-04 |
| 28 | GO:0006561: proline biosynthetic process | 1.51E-03 |
| 29 | GO:0010405: arabinogalactan protein metabolic process | 1.51E-03 |
| 30 | GO:0042549: photosystem II stabilization | 1.51E-03 |
| 31 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.51E-03 |
| 32 | GO:0007623: circadian rhythm | 1.76E-03 |
| 33 | GO:0010189: vitamin E biosynthetic process | 1.81E-03 |
| 34 | GO:0010019: chloroplast-nucleus signaling pathway | 1.81E-03 |
| 35 | GO:0010196: nonphotochemical quenching | 2.12E-03 |
| 36 | GO:1900057: positive regulation of leaf senescence | 2.12E-03 |
| 37 | GO:0009645: response to low light intensity stimulus | 2.12E-03 |
| 38 | GO:0018298: protein-chromophore linkage | 2.14E-03 |
| 39 | GO:0032508: DNA duplex unwinding | 2.46E-03 |
| 40 | GO:0006402: mRNA catabolic process | 2.46E-03 |
| 41 | GO:0009850: auxin metabolic process | 2.46E-03 |
| 42 | GO:0032544: plastid translation | 2.81E-03 |
| 43 | GO:0009657: plastid organization | 2.81E-03 |
| 44 | GO:0033384: geranyl diphosphate biosynthetic process | 3.17E-03 |
| 45 | GO:0000373: Group II intron splicing | 3.17E-03 |
| 46 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.17E-03 |
| 47 | GO:0045337: farnesyl diphosphate biosynthetic process | 3.17E-03 |
| 48 | GO:0010206: photosystem II repair | 3.17E-03 |
| 49 | GO:0010205: photoinhibition | 3.55E-03 |
| 50 | GO:0009638: phototropism | 3.55E-03 |
| 51 | GO:0009688: abscisic acid biosynthetic process | 3.95E-03 |
| 52 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 3.95E-03 |
| 53 | GO:0006810: transport | 4.35E-03 |
| 54 | GO:0009750: response to fructose | 4.36E-03 |
| 55 | GO:0009585: red, far-red light phototransduction | 4.66E-03 |
| 56 | GO:0015979: photosynthesis | 4.75E-03 |
| 57 | GO:0006417: regulation of translation | 5.15E-03 |
| 58 | GO:0006006: glucose metabolic process | 5.22E-03 |
| 59 | GO:2000028: regulation of photoperiodism, flowering | 5.22E-03 |
| 60 | GO:0018107: peptidyl-threonine phosphorylation | 5.22E-03 |
| 61 | GO:0009718: anthocyanin-containing compound biosynthetic process | 5.22E-03 |
| 62 | GO:0009767: photosynthetic electron transport chain | 5.22E-03 |
| 63 | GO:0030048: actin filament-based movement | 5.22E-03 |
| 64 | GO:0009266: response to temperature stimulus | 5.68E-03 |
| 65 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.62E-03 |
| 66 | GO:0005992: trehalose biosynthetic process | 7.11E-03 |
| 67 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.62E-03 |
| 68 | GO:0006418: tRNA aminoacylation for protein translation | 7.62E-03 |
| 69 | GO:0061077: chaperone-mediated protein folding | 8.14E-03 |
| 70 | GO:0016226: iron-sulfur cluster assembly | 8.67E-03 |
| 71 | GO:0000413: protein peptidyl-prolyl isomerization | 1.09E-02 |
| 72 | GO:0010182: sugar mediated signaling pathway | 1.15E-02 |
| 73 | GO:0009451: RNA modification | 1.17E-02 |
| 74 | GO:0009735: response to cytokinin | 1.22E-02 |
| 75 | GO:0000302: response to reactive oxygen species | 1.34E-02 |
| 76 | GO:0030163: protein catabolic process | 1.46E-02 |
| 77 | GO:0009658: chloroplast organization | 1.78E-02 |
| 78 | GO:0042128: nitrate assimilation | 1.88E-02 |
| 79 | GO:0055114: oxidation-reduction process | 2.04E-02 |
| 80 | GO:0009817: defense response to fungus, incompatible interaction | 2.09E-02 |
| 81 | GO:0048481: plant ovule development | 2.09E-02 |
| 82 | GO:0000160: phosphorelay signal transduction system | 2.17E-02 |
| 83 | GO:0009631: cold acclimation | 2.32E-02 |
| 84 | GO:0010119: regulation of stomatal movement | 2.32E-02 |
| 85 | GO:0034599: cellular response to oxidative stress | 2.56E-02 |
| 86 | GO:0006631: fatty acid metabolic process | 2.80E-02 |
| 87 | GO:0010114: response to red light | 2.97E-02 |
| 88 | GO:0032259: methylation | 3.12E-02 |
| 89 | GO:0016042: lipid catabolic process | 3.16E-02 |
| 90 | GO:0006979: response to oxidative stress | 3.34E-02 |
| 91 | GO:0006397: mRNA processing | 3.40E-02 |
| 92 | GO:0031347: regulation of defense response | 3.40E-02 |
| 93 | GO:0009736: cytokinin-activated signaling pathway | 3.67E-02 |
| 94 | GO:0006364: rRNA processing | 3.67E-02 |
| 95 | GO:0006857: oligopeptide transport | 3.85E-02 |
| 96 | GO:0009626: plant-type hypersensitive response | 4.32E-02 |
| 97 | GO:0006396: RNA processing | 4.81E-02 |
| 98 | GO:0018105: peptidyl-serine phosphorylation | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 2 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 5 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 6 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 7 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 8 | GO:0005528: FK506 binding | 3.62E-09 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.16E-08 |
| 10 | GO:0016787: hydrolase activity | 3.32E-05 |
| 11 | GO:0004328: formamidase activity | 1.35E-04 |
| 12 | GO:0045485: omega-6 fatty acid desaturase activity | 1.35E-04 |
| 13 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 1.35E-04 |
| 14 | GO:0047746: chlorophyllase activity | 3.11E-04 |
| 15 | GO:0004047: aminomethyltransferase activity | 3.11E-04 |
| 16 | GO:0002161: aminoacyl-tRNA editing activity | 5.13E-04 |
| 17 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 7.34E-04 |
| 18 | GO:0001872: (1->3)-beta-D-glucan binding | 7.34E-04 |
| 19 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 7.34E-04 |
| 20 | GO:0016851: magnesium chelatase activity | 7.34E-04 |
| 21 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 9.73E-04 |
| 22 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 9.73E-04 |
| 23 | GO:0019843: rRNA binding | 1.18E-03 |
| 24 | GO:0016688: L-ascorbate peroxidase activity | 1.51E-03 |
| 25 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.51E-03 |
| 26 | GO:0004130: cytochrome-c peroxidase activity | 1.51E-03 |
| 27 | GO:0035673: oligopeptide transmembrane transporter activity | 1.51E-03 |
| 28 | GO:0016168: chlorophyll binding | 1.74E-03 |
| 29 | GO:0004559: alpha-mannosidase activity | 1.81E-03 |
| 30 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.81E-03 |
| 31 | GO:0004337: geranyltranstransferase activity | 3.17E-03 |
| 32 | GO:0005381: iron ion transmembrane transporter activity | 3.55E-03 |
| 33 | GO:0004805: trehalose-phosphatase activity | 3.95E-03 |
| 34 | GO:0004161: dimethylallyltranstransferase activity | 4.36E-03 |
| 35 | GO:0015198: oligopeptide transporter activity | 4.79E-03 |
| 36 | GO:0000049: tRNA binding | 4.79E-03 |
| 37 | GO:0004022: alcohol dehydrogenase (NAD) activity | 5.22E-03 |
| 38 | GO:0004089: carbonate dehydratase activity | 5.22E-03 |
| 39 | GO:0003774: motor activity | 5.68E-03 |
| 40 | GO:0008266: poly(U) RNA binding | 5.68E-03 |
| 41 | GO:0031409: pigment binding | 6.62E-03 |
| 42 | GO:0051536: iron-sulfur cluster binding | 7.11E-03 |
| 43 | GO:0016758: transferase activity, transferring hexosyl groups | 8.07E-03 |
| 44 | GO:0022891: substrate-specific transmembrane transporter activity | 9.21E-03 |
| 45 | GO:0003727: single-stranded RNA binding | 9.77E-03 |
| 46 | GO:0004812: aminoacyl-tRNA ligase activity | 1.03E-02 |
| 47 | GO:0016853: isomerase activity | 1.21E-02 |
| 48 | GO:0050662: coenzyme binding | 1.21E-02 |
| 49 | GO:0016491: oxidoreductase activity | 1.33E-02 |
| 50 | GO:0048038: quinone binding | 1.34E-02 |
| 51 | GO:0000156: phosphorelay response regulator activity | 1.46E-02 |
| 52 | GO:0008483: transaminase activity | 1.60E-02 |
| 53 | GO:0016788: hydrolase activity, acting on ester bonds | 1.81E-02 |
| 54 | GO:0030247: polysaccharide binding | 1.95E-02 |
| 55 | GO:0008236: serine-type peptidase activity | 2.02E-02 |
| 56 | GO:0004222: metalloendopeptidase activity | 2.24E-02 |
| 57 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.32E-02 |
| 58 | GO:0052689: carboxylic ester hydrolase activity | 2.44E-02 |
| 59 | GO:0050661: NADP binding | 2.72E-02 |
| 60 | GO:0003723: RNA binding | 2.97E-02 |
| 61 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.14E-02 |
| 62 | GO:0043621: protein self-association | 3.14E-02 |
| 63 | GO:0004519: endonuclease activity | 3.54E-02 |
| 64 | GO:0003690: double-stranded DNA binding | 3.76E-02 |
| 65 | GO:0016298: lipase activity | 3.76E-02 |
| 66 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.42E-02 |
| 67 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.42E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 3.83E-25 |
| 3 | GO:0009534: chloroplast thylakoid | 7.14E-21 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.14E-15 |
| 5 | GO:0009941: chloroplast envelope | 7.09E-13 |
| 6 | GO:0009570: chloroplast stroma | 1.13E-12 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 5.55E-10 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.29E-06 |
| 9 | GO:0009579: thylakoid | 2.49E-05 |
| 10 | GO:0009706: chloroplast inner membrane | 9.92E-05 |
| 11 | GO:0010287: plastoglobule | 1.34E-04 |
| 12 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.35E-04 |
| 13 | GO:0009782: photosystem I antenna complex | 1.35E-04 |
| 14 | GO:0031977: thylakoid lumen | 3.53E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 5.13E-04 |
| 16 | GO:0005960: glycine cleavage complex | 7.34E-04 |
| 17 | GO:0009523: photosystem II | 1.08E-03 |
| 18 | GO:0030529: intracellular ribonucleoprotein complex | 1.64E-03 |
| 19 | GO:0009533: chloroplast stromal thylakoid | 2.12E-03 |
| 20 | GO:0008180: COP9 signalosome | 3.17E-03 |
| 21 | GO:0016459: myosin complex | 3.95E-03 |
| 22 | GO:0031969: chloroplast membrane | 4.01E-03 |
| 23 | GO:0032040: small-subunit processome | 4.79E-03 |
| 24 | GO:0030095: chloroplast photosystem II | 5.68E-03 |
| 25 | GO:0030076: light-harvesting complex | 6.14E-03 |
| 26 | GO:0043231: intracellular membrane-bounded organelle | 7.45E-03 |
| 27 | GO:0009654: photosystem II oxygen evolving complex | 7.62E-03 |
| 28 | GO:0042651: thylakoid membrane | 7.62E-03 |
| 29 | GO:0019898: extrinsic component of membrane | 1.27E-02 |
| 30 | GO:0046658: anchored component of plasma membrane | 1.52E-02 |
| 31 | GO:0019005: SCF ubiquitin ligase complex | 2.09E-02 |
| 32 | GO:0015934: large ribosomal subunit | 2.32E-02 |
| 33 | GO:0000502: proteasome complex | 3.67E-02 |
| 34 | GO:0009505: plant-type cell wall | 4.37E-02 |