Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G53520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:0006642: triglyceride mobilization0.00E+00
5GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0097164: ammonium ion metabolic process0.00E+00
8GO:0042493: response to drug0.00E+00
9GO:1905499: trichome papilla formation0.00E+00
10GO:0006633: fatty acid biosynthetic process2.07E-07
11GO:0010411: xyloglucan metabolic process5.75E-06
12GO:0042335: cuticle development1.89E-05
13GO:0042546: cell wall biogenesis2.78E-05
14GO:0071555: cell wall organization3.67E-05
15GO:0006869: lipid transport7.34E-05
16GO:0016123: xanthophyll biosynthetic process1.04E-04
17GO:0007017: microtubule-based process1.47E-04
18GO:0042372: phylloquinone biosynthetic process2.05E-04
19GO:0010444: guard mother cell differentiation2.67E-04
20GO:0043007: maintenance of rDNA3.22E-04
21GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway3.22E-04
22GO:0005980: glycogen catabolic process3.22E-04
23GO:0000032: cell wall mannoprotein biosynthetic process3.22E-04
24GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.22E-04
25GO:0032025: response to cobalt ion3.22E-04
26GO:0042759: long-chain fatty acid biosynthetic process3.22E-04
27GO:0042371: vitamin K biosynthetic process3.22E-04
28GO:0043686: co-translational protein modification3.22E-04
29GO:0007267: cell-cell signaling6.14E-04
30GO:0071258: cellular response to gravity7.02E-04
31GO:0006529: asparagine biosynthetic process7.02E-04
32GO:2000123: positive regulation of stomatal complex development7.02E-04
33GO:0010198: synergid death7.02E-04
34GO:0070981: L-asparagine biosynthetic process7.02E-04
35GO:0060919: auxin influx7.02E-04
36GO:0018119: peptidyl-cysteine S-nitrosylation7.88E-04
37GO:0016024: CDP-diacylglycerol biosynthetic process8.99E-04
38GO:0006065: UDP-glucuronate biosynthetic process1.14E-03
39GO:0032504: multicellular organism reproduction1.14E-03
40GO:0033591: response to L-ascorbic acid1.14E-03
41GO:0046168: glycerol-3-phosphate catabolic process1.14E-03
42GO:0019563: glycerol catabolic process1.14E-03
43GO:0051604: protein maturation1.14E-03
44GO:0016051: carbohydrate biosynthetic process1.33E-03
45GO:0010025: wax biosynthetic process1.42E-03
46GO:0019344: cysteine biosynthetic process1.57E-03
47GO:0009413: response to flooding1.63E-03
48GO:0009298: GDP-mannose biosynthetic process1.63E-03
49GO:0006166: purine ribonucleoside salvage1.63E-03
50GO:0006072: glycerol-3-phosphate metabolic process1.63E-03
51GO:0009650: UV protection1.63E-03
52GO:0051016: barbed-end actin filament capping1.63E-03
53GO:0010731: protein glutathionylation1.63E-03
54GO:0006424: glutamyl-tRNA aminoacylation1.63E-03
55GO:0046739: transport of virus in multicellular host1.63E-03
56GO:0006168: adenine salvage1.63E-03
57GO:0050482: arachidonic acid secretion1.63E-03
58GO:0005975: carbohydrate metabolic process1.68E-03
59GO:0015976: carbon utilization2.19E-03
60GO:0015689: molybdate ion transport2.19E-03
61GO:0009765: photosynthesis, light harvesting2.19E-03
62GO:0006183: GTP biosynthetic process2.19E-03
63GO:2000038: regulation of stomatal complex development2.19E-03
64GO:0006021: inositol biosynthetic process2.19E-03
65GO:0044206: UMP salvage2.19E-03
66GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.19E-03
67GO:0009956: radial pattern formation2.19E-03
68GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.28E-03
69GO:0019722: calcium-mediated signaling2.47E-03
70GO:0031365: N-terminal protein amino acid modification2.80E-03
71GO:0044209: AMP salvage2.80E-03
72GO:0006665: sphingolipid metabolic process2.80E-03
73GO:0010375: stomatal complex patterning2.80E-03
74GO:0048359: mucilage metabolic process involved in seed coat development2.80E-03
75GO:0016120: carotene biosynthetic process2.80E-03
76GO:0032543: mitochondrial translation2.80E-03
77GO:0043097: pyrimidine nucleoside salvage2.80E-03
78GO:0010236: plastoquinone biosynthetic process2.80E-03
79GO:0000271: polysaccharide biosynthetic process2.89E-03
80GO:0080022: primary root development2.89E-03
81GO:0000413: protein peptidyl-prolyl isomerization2.89E-03
82GO:0045489: pectin biosynthetic process3.12E-03
83GO:0009826: unidimensional cell growth3.13E-03
84GO:0009658: chloroplast organization3.32E-03
85GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.46E-03
86GO:0006655: phosphatidylglycerol biosynthetic process3.46E-03
87GO:0006206: pyrimidine nucleobase metabolic process3.46E-03
88GO:0035435: phosphate ion transmembrane transport3.46E-03
89GO:0009117: nucleotide metabolic process3.46E-03
90GO:0046855: inositol phosphate dephosphorylation3.46E-03
91GO:0006014: D-ribose metabolic process3.46E-03
92GO:0032502: developmental process4.11E-03
93GO:0010583: response to cyclopentenone4.11E-03
94GO:0010555: response to mannitol4.17E-03
95GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.17E-03
96GO:0009612: response to mechanical stimulus4.17E-03
97GO:0048280: vesicle fusion with Golgi apparatus4.17E-03
98GO:0009554: megasporogenesis4.17E-03
99GO:0009828: plant-type cell wall loosening4.67E-03
100GO:0009735: response to cytokinin4.88E-03
101GO:0009772: photosynthetic electron transport in photosystem II4.92E-03
102GO:0009645: response to low light intensity stimulus4.92E-03
103GO:0016126: sterol biosynthetic process5.57E-03
104GO:0010027: thylakoid membrane organization5.57E-03
105GO:0006644: phospholipid metabolic process5.71E-03
106GO:0009642: response to light intensity5.71E-03
107GO:0009690: cytokinin metabolic process5.71E-03
108GO:0006875: cellular metal ion homeostasis5.71E-03
109GO:0045010: actin nucleation5.71E-03
110GO:0009932: cell tip growth6.55E-03
111GO:0010497: plasmodesmata-mediated intercellular transport6.55E-03
112GO:0032544: plastid translation6.55E-03
113GO:0016311: dephosphorylation6.91E-03
114GO:0015780: nucleotide-sugar transport7.42E-03
115GO:0006754: ATP biosynthetic process7.42E-03
116GO:0016042: lipid catabolic process7.97E-03
117GO:0042761: very long-chain fatty acid biosynthetic process8.34E-03
118GO:0007568: aging8.41E-03
119GO:0006896: Golgi to vacuole transport9.30E-03
120GO:0006535: cysteine biosynthetic process from serine9.30E-03
121GO:0043069: negative regulation of programmed cell death9.30E-03
122GO:0048829: root cap development9.30E-03
123GO:0007166: cell surface receptor signaling pathway1.00E-02
124GO:0010015: root morphogenesis1.03E-02
125GO:0000038: very long-chain fatty acid metabolic process1.03E-02
126GO:0006415: translational termination1.03E-02
127GO:0006790: sulfur compound metabolic process1.13E-02
128GO:0045037: protein import into chloroplast stroma1.13E-02
129GO:0030036: actin cytoskeleton organization1.24E-02
130GO:0050826: response to freezing1.24E-02
131GO:0006094: gluconeogenesis1.24E-02
132GO:0008643: carbohydrate transport1.29E-02
133GO:0009266: response to temperature stimulus1.35E-02
134GO:0010143: cutin biosynthetic process1.35E-02
135GO:0006541: glutamine metabolic process1.35E-02
136GO:0010207: photosystem II assembly1.35E-02
137GO:0009933: meristem structural organization1.35E-02
138GO:0019253: reductive pentose-phosphate cycle1.35E-02
139GO:0046854: phosphatidylinositol phosphorylation1.46E-02
140GO:0009969: xyloglucan biosynthetic process1.46E-02
141GO:0019853: L-ascorbic acid biosynthetic process1.46E-02
142GO:0009664: plant-type cell wall organization1.50E-02
143GO:0042538: hyperosmotic salinity response1.50E-02
144GO:0007049: cell cycle1.70E-02
145GO:0009116: nucleoside metabolic process1.70E-02
146GO:0006096: glycolytic process1.91E-02
147GO:0080167: response to karrikin1.94E-02
148GO:0003333: amino acid transmembrane transport1.95E-02
149GO:0016998: cell wall macromolecule catabolic process1.95E-02
150GO:0031348: negative regulation of defense response2.08E-02
151GO:0009411: response to UV2.22E-02
152GO:0010091: trichome branching2.35E-02
153GO:0042127: regulation of cell proliferation2.35E-02
154GO:0051726: regulation of cell cycle2.44E-02
155GO:0009742: brassinosteroid mediated signaling pathway2.44E-02
156GO:0016117: carotenoid biosynthetic process2.49E-02
157GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.49E-02
158GO:0042147: retrograde transport, endosome to Golgi2.49E-02
159GO:0000226: microtubule cytoskeleton organization2.63E-02
160GO:0010305: leaf vascular tissue pattern formation2.78E-02
161GO:0009646: response to absence of light2.92E-02
162GO:0006623: protein targeting to vacuole3.07E-02
163GO:0019252: starch biosynthetic process3.07E-02
164GO:0008654: phospholipid biosynthetic process3.07E-02
165GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.23E-02
166GO:0071554: cell wall organization or biogenesis3.23E-02
167GO:0006891: intra-Golgi vesicle-mediated transport3.23E-02
168GO:1901657: glycosyl compound metabolic process3.54E-02
169GO:0009567: double fertilization forming a zygote and endosperm3.70E-02
170GO:0016125: sterol metabolic process3.70E-02
171GO:0045490: pectin catabolic process3.96E-02
172GO:0051607: defense response to virus4.03E-02
173GO:0000910: cytokinesis4.03E-02
174GO:0009627: systemic acquired resistance4.53E-02
175GO:0042128: nitrate assimilation4.53E-02
176GO:0006888: ER to Golgi vesicle-mediated transport4.71E-02
RankGO TermAdjusted P value
1GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
2GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
3GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
4GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
5GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
6GO:0004496: mevalonate kinase activity0.00E+00
7GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
12GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
13GO:0016762: xyloglucan:xyloglucosyl transferase activity1.38E-06
14GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity4.70E-06
15GO:0016798: hydrolase activity, acting on glycosyl bonds5.75E-06
16GO:0008289: lipid binding4.39E-05
17GO:0051920: peroxiredoxin activity2.05E-04
18GO:0052689: carboxylic ester hydrolase activity2.75E-04
19GO:0010347: L-galactose-1-phosphate phosphatase activity3.22E-04
20GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.22E-04
21GO:0030794: (S)-coclaurine-N-methyltransferase activity3.22E-04
22GO:0004560: alpha-L-fucosidase activity3.22E-04
23GO:0004807: triose-phosphate isomerase activity3.22E-04
24GO:0008184: glycogen phosphorylase activity3.22E-04
25GO:0080132: fatty acid alpha-hydroxylase activity3.22E-04
26GO:0004645: phosphorylase activity3.22E-04
27GO:0004071: aspartate-ammonia ligase activity3.22E-04
28GO:0009374: biotin binding3.22E-04
29GO:0004476: mannose-6-phosphate isomerase activity3.22E-04
30GO:0042586: peptide deformylase activity3.22E-04
31GO:0015088: copper uptake transmembrane transporter activity3.22E-04
32GO:0016209: antioxidant activity3.36E-04
33GO:0005200: structural constituent of cytoskeleton6.14E-04
34GO:0003938: IMP dehydrogenase activity7.02E-04
35GO:0052832: inositol monophosphate 3-phosphatase activity7.02E-04
36GO:0008934: inositol monophosphate 1-phosphatase activity7.02E-04
37GO:0052833: inositol monophosphate 4-phosphatase activity7.02E-04
38GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity7.02E-04
39GO:0016788: hydrolase activity, acting on ester bonds7.47E-04
40GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.89E-04
41GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.14E-03
42GO:0003979: UDP-glucose 6-dehydrogenase activity1.14E-03
43GO:0004148: dihydrolipoyl dehydrogenase activity1.14E-03
44GO:0045174: glutathione dehydrogenase (ascorbate) activity1.14E-03
45GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.42E-03
46GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.42E-03
47GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.42E-03
48GO:0004857: enzyme inhibitor activity1.57E-03
49GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.63E-03
50GO:0035529: NADH pyrophosphatase activity1.63E-03
51GO:0003999: adenine phosphoribosyltransferase activity1.63E-03
52GO:0016149: translation release factor activity, codon specific1.63E-03
53GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.63E-03
54GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.63E-03
55GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.09E-03
56GO:0004659: prenyltransferase activity2.19E-03
57GO:0004845: uracil phosphoribosyltransferase activity2.19E-03
58GO:0016836: hydro-lyase activity2.19E-03
59GO:0010328: auxin influx transmembrane transporter activity2.19E-03
60GO:0015098: molybdate ion transmembrane transporter activity2.19E-03
61GO:0008514: organic anion transmembrane transporter activity2.47E-03
62GO:0003989: acetyl-CoA carboxylase activity2.80E-03
63GO:0009922: fatty acid elongase activity2.80E-03
64GO:0004623: phospholipase A2 activity2.80E-03
65GO:0004040: amidase activity2.80E-03
66GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.46E-03
67GO:0008200: ion channel inhibitor activity3.46E-03
68GO:0004605: phosphatidate cytidylyltransferase activity3.46E-03
69GO:0080030: methyl indole-3-acetate esterase activity3.46E-03
70GO:0016208: AMP binding3.46E-03
71GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.46E-03
72GO:0016462: pyrophosphatase activity3.46E-03
73GO:0019901: protein kinase binding3.60E-03
74GO:0004124: cysteine synthase activity4.17E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.17E-03
76GO:0051753: mannan synthase activity4.17E-03
77GO:0004849: uridine kinase activity4.17E-03
78GO:0004747: ribokinase activity4.17E-03
79GO:0043295: glutathione binding4.92E-03
80GO:0016722: oxidoreductase activity, oxidizing metal ions4.95E-03
81GO:0016758: transferase activity, transferring hexosyl groups5.42E-03
82GO:0008865: fructokinase activity5.71E-03
83GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.42E-03
84GO:0003747: translation release factor activity7.42E-03
85GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.42E-03
86GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.73E-03
87GO:0004693: cyclin-dependent protein serine/threonine kinase activity8.02E-03
88GO:0005381: iron ion transmembrane transporter activity8.34E-03
89GO:0030145: manganese ion binding8.41E-03
90GO:0008378: galactosyltransferase activity1.13E-02
91GO:0004364: glutathione transferase activity1.14E-02
92GO:0004089: carbonate dehydratase activity1.24E-02
93GO:0015114: phosphate ion transmembrane transporter activity1.24E-02
94GO:0004565: beta-galactosidase activity1.24E-02
95GO:0015293: symporter activity1.34E-02
96GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.39E-02
97GO:0051287: NAD binding1.45E-02
98GO:0008324: cation transmembrane transporter activity1.83E-02
99GO:0045735: nutrient reservoir activity1.91E-02
100GO:0004650: polygalacturonase activity2.10E-02
101GO:0030599: pectinesterase activity2.16E-02
102GO:0030570: pectate lyase activity2.22E-02
103GO:0016740: transferase activity2.66E-02
104GO:0003713: transcription coactivator activity2.78E-02
105GO:0019843: rRNA binding2.88E-02
106GO:0003924: GTPase activity3.16E-02
107GO:0030170: pyridoxal phosphate binding3.19E-02
108GO:0005507: copper ion binding3.33E-02
109GO:0009055: electron carrier activity3.44E-02
110GO:0051015: actin filament binding3.54E-02
111GO:0000156: phosphorelay response regulator activity3.54E-02
112GO:0016791: phosphatase activity3.70E-02
113GO:0016413: O-acetyltransferase activity4.03E-02
114GO:0016597: amino acid binding4.03E-02
115GO:0005525: GTP binding4.10E-02
116GO:0102483: scopolin beta-glucosidase activity4.71E-02
117GO:0008236: serine-type peptidase activity4.88E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0048046: apoplast1.47E-15
4GO:0031225: anchored component of membrane7.96E-15
5GO:0046658: anchored component of plasma membrane4.06E-13
6GO:0005618: cell wall2.10E-11
7GO:0009570: chloroplast stroma5.12E-11
8GO:0009505: plant-type cell wall6.07E-09
9GO:0005576: extracellular region1.21E-08
10GO:0009941: chloroplast envelope2.88E-08
11GO:0009507: chloroplast6.34E-07
12GO:0005886: plasma membrane1.55E-06
13GO:0009923: fatty acid elongase complex3.22E-04
14GO:0045298: tubulin complex4.95E-04
15GO:0009536: plastid1.01E-03
16GO:0009509: chromoplast1.14E-03
17GO:0009317: acetyl-CoA carboxylase complex1.14E-03
18GO:0009506: plasmodesma1.55E-03
19GO:0009331: glycerol-3-phosphate dehydrogenase complex1.63E-03
20GO:0031977: thylakoid lumen1.66E-03
21GO:0009526: plastid envelope2.19E-03
22GO:0031897: Tic complex2.19E-03
23GO:0009579: thylakoid2.25E-03
24GO:0009534: chloroplast thylakoid2.30E-03
25GO:0055035: plastid thylakoid membrane2.80E-03
26GO:0016020: membrane3.16E-03
27GO:0009535: chloroplast thylakoid membrane4.24E-03
28GO:0031969: chloroplast membrane4.60E-03
29GO:0009533: chloroplast stromal thylakoid4.92E-03
30GO:0009543: chloroplast thylakoid lumen5.61E-03
31GO:0012507: ER to Golgi transport vesicle membrane5.71E-03
32GO:0005794: Golgi apparatus9.23E-03
33GO:0031012: extracellular matrix1.24E-02
34GO:0030176: integral component of endoplasmic reticulum membrane1.46E-02
35GO:0031410: cytoplasmic vesicle2.08E-02
36GO:0009504: cell plate3.07E-02
37GO:0005778: peroxisomal membrane3.86E-02
38GO:0005768: endosome4.75E-02
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Gene type



Gene DE type