co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006069: ethanol oxidation	0.00E+00
2	GO:0048227: plasma membrane to endosome transport	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
5	GO:0006592: ornithine biosynthetic process	0.00E+00
6	GO:0032780: negative regulation of ATPase activity	0.00E+00
7	GO:0006482: protein demethylation	0.00E+00
8	GO:0046292: formaldehyde metabolic process	0.00E+00
9	GO:0030149: sphingolipid catabolic process	0.00E+00
10	GO:0046686: response to cadmium ion	5.65E-08
11	GO:0045454: cell redox homeostasis	6.15E-08
12	GO:0006097: glyoxylate cycle	4.30E-07
13	GO:0034976: response to endoplasmic reticulum stress	1.17E-06
14	GO:0006101: citrate metabolic process	2.28E-06
15	GO:0051788: response to misfolded protein	2.28E-06
16	GO:0006102: isocitrate metabolic process	3.65E-06
17	GO:0006099: tricarboxylic acid cycle	3.85E-06
18	GO:0001676: long-chain fatty acid metabolic process	1.90E-05
19	GO:0055114: oxidation-reduction process	5.90E-05
20	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	8.18E-05
21	GO:0043248: proteasome assembly	8.18E-05
22	GO:0006457: protein folding	2.07E-04
23	GO:0080093: regulation of photorespiration	2.20E-04
24	GO:0048455: stamen formation	2.20E-04
25	GO:0006772: thiamine metabolic process	2.20E-04
26	GO:0031998: regulation of fatty acid beta-oxidation	2.20E-04
27	GO:0035266: meristem growth	2.20E-04
28	GO:0007292: female gamete generation	2.20E-04
29	GO:0006805: xenobiotic metabolic process	2.20E-04
30	GO:0051938: L-glutamate import	2.20E-04
31	GO:1990641: response to iron ion starvation	2.20E-04
32	GO:0080173: male-female gamete recognition during double fertilization	2.20E-04
33	GO:0006007: glucose catabolic process	2.20E-04
34	GO:1901183: positive regulation of camalexin biosynthetic process	2.20E-04
35	GO:0007264: small GTPase mediated signal transduction	2.35E-04
36	GO:0009651: response to salt stress	3.32E-04
37	GO:0043067: regulation of programmed cell death	3.41E-04
38	GO:0019752: carboxylic acid metabolic process	4.90E-04
39	GO:1902000: homogentisate catabolic process	4.90E-04
40	GO:0019441: tryptophan catabolic process to kynurenine	4.90E-04
41	GO:0097054: L-glutamate biosynthetic process	4.90E-04
42	GO:0043091: L-arginine import	4.90E-04
43	GO:0010155: regulation of proton transport	4.90E-04
44	GO:0019521: D-gluconate metabolic process	4.90E-04
45	GO:0007051: spindle organization	4.90E-04
46	GO:0019374: galactolipid metabolic process	4.90E-04
47	GO:0006499: N-terminal protein myristoylation	5.65E-04
48	GO:0010043: response to zinc ion	6.00E-04
49	GO:0006979: response to oxidative stress	6.02E-04
50	GO:0090351: seedling development	7.56E-04
51	GO:0010359: regulation of anion channel activity	7.98E-04
52	GO:0009072: aromatic amino acid family metabolic process	7.98E-04
53	GO:0060968: regulation of gene silencing	7.98E-04
54	GO:0010498: proteasomal protein catabolic process	7.98E-04
55	GO:0006511: ubiquitin-dependent protein catabolic process	9.65E-04
56	GO:0006855: drug transmembrane transport	1.12E-03
57	GO:0010255: glucose mediated signaling pathway	1.14E-03
58	GO:0072334: UDP-galactose transmembrane transport	1.14E-03
59	GO:0006537: glutamate biosynthetic process	1.14E-03
60	GO:0030433: ubiquitin-dependent ERAD pathway	1.22E-03
61	GO:0009809: lignin biosynthetic process	1.34E-03
62	GO:0051603: proteolysis involved in cellular protein catabolic process	1.40E-03
63	GO:0010188: response to microbial phytotoxin	1.51E-03
64	GO:0032366: intracellular sterol transport	1.51E-03
65	GO:0019676: ammonia assimilation cycle	1.51E-03
66	GO:1902584: positive regulation of response to water deprivation	1.51E-03
67	GO:0010363: regulation of plant-type hypersensitive response	1.51E-03
68	GO:0010118: stomatal movement	1.68E-03
69	GO:0006662: glycerol ether metabolic process	1.81E-03
70	GO:0006564: L-serine biosynthetic process	1.93E-03
71	GO:0009229: thiamine diphosphate biosynthetic process	1.93E-03
72	GO:0007029: endoplasmic reticulum organization	1.93E-03
73	GO:0006405: RNA export from nucleus	1.93E-03
74	GO:0030308: negative regulation of cell growth	1.93E-03
75	GO:0045927: positive regulation of growth	1.93E-03
76	GO:0009697: salicylic acid biosynthetic process	1.93E-03
77	GO:0006090: pyruvate metabolic process	1.93E-03
78	GO:0009555: pollen development	2.15E-03
79	GO:0010193: response to ozone	2.23E-03
80	GO:0035435: phosphate ion transmembrane transport	2.38E-03
81	GO:0000060: protein import into nucleus, translocation	2.38E-03
82	GO:0006014: D-ribose metabolic process	2.38E-03
83	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.38E-03
84	GO:0006751: glutathione catabolic process	2.38E-03
85	GO:0048827: phyllome development	2.38E-03
86	GO:0048232: male gamete generation	2.38E-03
87	GO:1902456: regulation of stomatal opening	2.38E-03
88	GO:0034389: lipid particle organization	2.86E-03
89	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	2.86E-03
90	GO:0010189: vitamin E biosynthetic process	2.86E-03
91	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.86E-03
92	GO:0009615: response to virus	3.21E-03
93	GO:0000082: G1/S transition of mitotic cell cycle	3.36E-03
94	GO:0050790: regulation of catalytic activity	3.36E-03
95	GO:0048528: post-embryonic root development	3.36E-03
96	GO:0080186: developmental vegetative growth	3.36E-03
97	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.36E-03
98	GO:0009408: response to heat	3.58E-03
99	GO:0010078: maintenance of root meristem identity	3.90E-03
100	GO:0006644: phospholipid metabolic process	3.90E-03
101	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.90E-03
102	GO:0008219: cell death	4.19E-03
103	GO:0006526: arginine biosynthetic process	4.47E-03
104	GO:0017004: cytochrome complex assembly	4.47E-03
105	GO:0009808: lignin metabolic process	4.47E-03
106	GO:0010120: camalexin biosynthetic process	4.47E-03
107	GO:0000373: Group II intron splicing	5.06E-03
108	GO:0009821: alkaloid biosynthetic process	5.06E-03
109	GO:0006098: pentose-phosphate shunt	5.06E-03
110	GO:0045087: innate immune response	5.30E-03
111	GO:0034599: cellular response to oxidative stress	5.54E-03
112	GO:0006631: fatty acid metabolic process	6.30E-03
113	GO:0000103: sulfate assimilation	6.32E-03
114	GO:0043069: negative regulation of programmed cell death	6.32E-03
115	GO:0048829: root cap development	6.32E-03
116	GO:0009807: lignan biosynthetic process	6.98E-03
117	GO:0010015: root morphogenesis	6.98E-03
118	GO:0006108: malate metabolic process	8.39E-03
119	GO:0009933: meristem structural organization	9.13E-03
120	GO:0002237: response to molecule of bacterial origin	9.13E-03
121	GO:0006486: protein glycosylation	9.22E-03
122	GO:0006071: glycerol metabolic process	1.07E-02
123	GO:0000162: tryptophan biosynthetic process	1.07E-02
124	GO:0015031: protein transport	1.12E-02
125	GO:0048316: seed development	1.13E-02
126	GO:0006487: protein N-linked glycosylation	1.15E-02
127	GO:0009553: embryo sac development	1.28E-02
128	GO:0003333: amino acid transmembrane transport	1.32E-02
129	GO:0009624: response to nematode	1.32E-02
130	GO:0031348: negative regulation of defense response	1.40E-02
131	GO:0006810: transport	1.44E-02
132	GO:0009751: response to salicylic acid	1.54E-02
133	GO:0006629: lipid metabolic process	1.57E-02
134	GO:0051028: mRNA transport	1.68E-02
135	GO:0034220: ion transmembrane transport	1.77E-02
136	GO:0048868: pollen tube development	1.87E-02
137	GO:0006520: cellular amino acid metabolic process	1.87E-02
138	GO:0006508: proteolysis	1.89E-02
139	GO:0019252: starch biosynthetic process	2.07E-02
140	GO:0006635: fatty acid beta-oxidation	2.17E-02
141	GO:0010150: leaf senescence	2.28E-02
142	GO:0010583: response to cyclopentenone	2.28E-02
143	GO:0030163: protein catabolic process	2.38E-02
144	GO:0042742: defense response to bacterium	2.47E-02
145	GO:0006464: cellular protein modification process	2.49E-02
146	GO:0009567: double fertilization forming a zygote and endosperm	2.49E-02
147	GO:0010252: auxin homeostasis	2.49E-02
148	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.55E-02
149	GO:0010286: heat acclimation	2.60E-02
150	GO:0010029: regulation of seed germination	2.94E-02
151	GO:0009607: response to biotic stimulus	2.94E-02
152	GO:0006974: cellular response to DNA damage stimulus	3.05E-02
153	GO:0006888: ER to Golgi vesicle-mediated transport	3.17E-02
154	GO:0010311: lateral root formation	3.53E-02
155	GO:0048767: root hair elongation	3.53E-02
156	GO:0009407: toxin catabolic process	3.66E-02
157	GO:0010119: regulation of stomatal movement	3.78E-02
158	GO:0009853: photorespiration	4.03E-02
159	GO:0016192: vesicle-mediated transport	4.58E-02
160	GO:0042542: response to hydrogen peroxide	4.69E-02
161	GO:0009744: response to sucrose	4.83E-02
162	GO:0051707: response to other organism	4.83E-02
163	GO:0015979: photosynthesis	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
2	GO:0016508: long-chain-enoyl-CoA hydratase activity	0.00E+00
3	GO:0003846: 2-acylglycerol O-acyltransferase activity	0.00E+00
4	GO:0051723: protein methylesterase activity	0.00E+00
5	GO:0008777: acetylornithine deacetylase activity	0.00E+00
6	GO:0042030: ATPase inhibitor activity	0.00E+00
7	GO:0016504: peptidase activator activity	0.00E+00
8	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
9	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
10	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
11	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
12	GO:0051670: inulinase activity	0.00E+00
13	GO:0004622: lysophospholipase activity	0.00E+00
14	GO:0070577: lysine-acetylated histone binding	0.00E+00
15	GO:0050242: pyruvate, phosphate dikinase activity	0.00E+00
16	GO:0015930: glutamate synthase activity	0.00E+00
17	GO:0003994: aconitate hydratase activity	2.28E-06
18	GO:0003756: protein disulfide isomerase activity	4.23E-06
19	GO:0005093: Rab GDP-dissociation inhibitor activity	8.31E-06
20	GO:0005496: steroid binding	5.56E-05
21	GO:0036402: proteasome-activating ATPase activity	8.18E-05
22	GO:0031593: polyubiquitin binding	8.18E-05
23	GO:0102391: decanoate--CoA ligase activity	1.13E-04
24	GO:0004467: long-chain fatty acid-CoA ligase activity	1.49E-04
25	GO:0004788: thiamine diphosphokinase activity	2.20E-04
26	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.20E-04
27	GO:0031219: levanase activity	2.20E-04
28	GO:0016041: glutamate synthase (ferredoxin) activity	2.20E-04
29	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.20E-04
30	GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity	2.20E-04
31	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.20E-04
32	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	2.20E-04
33	GO:0051669: fructan beta-fructosidase activity	2.20E-04
34	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.20E-04
35	GO:0015035: protein disulfide oxidoreductase activity	3.32E-04
36	GO:0008171: O-methyltransferase activity	4.00E-04
37	GO:0008794: arsenate reductase (glutaredoxin) activity	4.63E-04
38	GO:0004061: arylformamidase activity	4.90E-04
39	GO:0015036: disulfide oxidoreductase activity	4.90E-04
40	GO:0048531: beta-1,3-galactosyltransferase activity	4.90E-04
41	GO:0008517: folic acid transporter activity	4.90E-04
42	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.90E-04
43	GO:0004566: beta-glucuronidase activity	4.90E-04
44	GO:0004617: phosphoglycerate dehydrogenase activity	4.90E-04
45	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	4.90E-04
46	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	4.90E-04
47	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.90E-04
48	GO:0005096: GTPase activator activity	5.32E-04
49	GO:0004022: alcohol dehydrogenase (NAD) activity	6.01E-04
50	GO:0017025: TBP-class protein binding	7.56E-04
51	GO:0051539: 4 iron, 4 sulfur cluster binding	7.94E-04
52	GO:0003840: gamma-glutamyltransferase activity	7.98E-04
53	GO:0036374: glutathione hydrolase activity	7.98E-04
54	GO:0016805: dipeptidase activity	7.98E-04
55	GO:0000030: mannosyltransferase activity	7.98E-04
56	GO:0016491: oxidoreductase activity	1.08E-03
57	GO:0004298: threonine-type endopeptidase activity	1.12E-03
58	GO:0015181: arginine transmembrane transporter activity	1.14E-03
59	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.14E-03
60	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.14E-03
61	GO:0004300: enoyl-CoA hydratase activity	1.14E-03
62	GO:0015189: L-lysine transmembrane transporter activity	1.14E-03
63	GO:0008276: protein methyltransferase activity	1.14E-03
64	GO:0001653: peptide receptor activity	1.14E-03
65	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.14E-03
66	GO:0016004: phospholipase activator activity	1.51E-03
67	GO:0010279: indole-3-acetic acid amido synthetase activity	1.51E-03
68	GO:0005313: L-glutamate transmembrane transporter activity	1.51E-03
69	GO:0070628: proteasome binding	1.51E-03
70	GO:0047134: protein-disulfide reductase activity	1.56E-03
71	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.93E-03
72	GO:0000104: succinate dehydrogenase activity	1.93E-03
73	GO:0031386: protein tag	1.93E-03
74	GO:0051538: 3 iron, 4 sulfur cluster binding	1.93E-03
75	GO:0005459: UDP-galactose transmembrane transporter activity	1.93E-03
76	GO:0004791: thioredoxin-disulfide reductase activity	1.95E-03
77	GO:0016853: isomerase activity	1.95E-03
78	GO:0051082: unfolded protein binding	2.09E-03
79	GO:0016615: malate dehydrogenase activity	2.38E-03
80	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.54E-03
81	GO:0005215: transporter activity	2.59E-03
82	GO:0004747: ribokinase activity	2.86E-03
83	GO:0030060: L-malate dehydrogenase activity	2.86E-03
84	GO:0004656: procollagen-proline 4-dioxygenase activity	2.86E-03
85	GO:0051920: peroxiredoxin activity	2.86E-03
86	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.86E-03
87	GO:0008320: protein transmembrane transporter activity	3.36E-03
88	GO:0004620: phospholipase activity	3.36E-03
89	GO:0016831: carboxy-lyase activity	3.36E-03
90	GO:0008235: metalloexopeptidase activity	3.36E-03
91	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.36E-03
92	GO:0008865: fructokinase activity	3.90E-03
93	GO:0016209: antioxidant activity	3.90E-03
94	GO:0052747: sinapyl alcohol dehydrogenase activity	3.90E-03
95	GO:0005507: copper ion binding	4.00E-03
96	GO:0015238: drug transmembrane transporter activity	4.40E-03
97	GO:0030145: manganese ion binding	4.84E-03
98	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.06E-03
99	GO:0071949: FAD binding	5.06E-03
100	GO:0047617: acyl-CoA hydrolase activity	5.68E-03
101	GO:0016844: strictosidine synthase activity	5.68E-03
102	GO:0015174: basic amino acid transmembrane transporter activity	5.68E-03
103	GO:0005509: calcium ion binding	6.43E-03
104	GO:0004364: glutathione transferase activity	6.56E-03
105	GO:0016887: ATPase activity	6.97E-03
106	GO:0004177: aminopeptidase activity	6.98E-03
107	GO:0008559: xenobiotic-transporting ATPase activity	6.98E-03
108	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.68E-03
109	GO:0005315: inorganic phosphate transmembrane transporter activity	8.39E-03
110	GO:0008234: cysteine-type peptidase activity	1.02E-02
111	GO:0031418: L-ascorbic acid binding	1.15E-02
112	GO:0005516: calmodulin binding	1.59E-02
113	GO:0008536: Ran GTPase binding	1.87E-02
114	GO:0010181: FMN binding	1.97E-02
115	GO:0048038: quinone binding	2.17E-02
116	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.17E-02
117	GO:0015297: antiporter activity	2.18E-02
118	GO:0004197: cysteine-type endopeptidase activity	2.28E-02
119	GO:0008237: metallopeptidase activity	2.60E-02
120	GO:0008483: transaminase activity	2.60E-02
121	GO:0016597: amino acid binding	2.71E-02
122	GO:0015250: water channel activity	2.82E-02
123	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.05E-02
124	GO:0004683: calmodulin-dependent protein kinase activity	3.17E-02
125	GO:0005524: ATP binding	3.53E-02
126	GO:0004601: peroxidase activity	3.53E-02
127	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.03E-02
128	GO:0008233: peptidase activity	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005783: endoplasmic reticulum	2.25E-12
4	GO:0005773: vacuole	5.88E-09
5	GO:0005829: cytosol	9.50E-09
6	GO:0000502: proteasome complex	6.89E-07
7	GO:0008540: proteasome regulatory particle, base subcomplex	1.01E-05
8	GO:0005774: vacuolar membrane	2.40E-05
9	GO:0005777: peroxisome	2.49E-05
10	GO:0005788: endoplasmic reticulum lumen	2.71E-05
11	GO:0005839: proteasome core complex	7.61E-05
12	GO:0031597: cytosolic proteasome complex	1.13E-04
13	GO:0031595: nuclear proteasome complex	1.49E-04
14	GO:0009514: glyoxysome	2.36E-04
15	GO:0005886: plasma membrane	4.05E-04
16	GO:0005789: endoplasmic reticulum membrane	4.43E-04
17	GO:0016020: membrane	4.44E-04
18	GO:0031314: extrinsic component of mitochondrial inner membrane	4.90E-04
19	GO:0030134: ER to Golgi transport vesicle	4.90E-04
20	GO:0005618: cell wall	5.39E-04
21	GO:0046861: glyoxysomal membrane	7.98E-04
22	GO:0008250: oligosaccharyltransferase complex	1.93E-03
23	GO:0005737: cytoplasm	2.03E-03
24	GO:0005798: Golgi-associated vesicle	2.38E-03
25	GO:0030127: COPII vesicle coat	2.38E-03
26	GO:0005801: cis-Golgi network	2.86E-03
27	GO:0030173: integral component of Golgi membrane	2.86E-03
28	GO:0005794: Golgi apparatus	3.10E-03
29	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.90E-03
30	GO:0005811: lipid particle	4.47E-03
31	GO:0000326: protein storage vacuole	4.47E-03
32	GO:0005765: lysosomal membrane	6.98E-03
33	GO:0005764: lysosome	9.13E-03
34	GO:0005750: mitochondrial respiratory chain complex III	9.13E-03
35	GO:0048046: apoplast	9.79E-03
36	GO:0030176: integral component of endoplasmic reticulum membrane	9.90E-03
37	GO:0009505: plant-type cell wall	1.10E-02
38	GO:0009507: chloroplast	1.10E-02
39	GO:0005747: mitochondrial respiratory chain complex I	1.13E-02
40	GO:0045271: respiratory chain complex I	1.23E-02
41	GO:0009506: plasmodesma	1.44E-02
42	GO:0009570: chloroplast stroma	3.33E-02
43	GO:0009536: plastid	3.33E-02
44	GO:0005643: nuclear pore	3.41E-02
45	GO:0000325: plant-type vacuole	3.78E-02
46	GO:0031969: chloroplast membrane	4.36E-02