co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G52340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0006642: triglyceride mobilization	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
6	GO:0060416: response to growth hormone	0.00E+00
7	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.78E-08
8	GO:0042335: cuticle development	1.96E-04
9	GO:0060627: regulation of vesicle-mediated transport	2.57E-04
10	GO:0070509: calcium ion import	2.57E-04
11	GO:0006824: cobalt ion transport	2.57E-04
12	GO:0007263: nitric oxide mediated signal transduction	2.57E-04
13	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.57E-04
14	GO:0006723: cuticle hydrocarbon biosynthetic process	2.57E-04
15	GO:0080051: cutin transport	2.57E-04
16	GO:0043007: maintenance of rDNA	2.57E-04
17	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.57E-04
18	GO:0071588: hydrogen peroxide mediated signaling pathway	2.57E-04
19	GO:0032544: plastid translation	2.98E-04
20	GO:0010027: thylakoid membrane organization	4.74E-04
21	GO:0010198: synergid death	5.68E-04
22	GO:0006695: cholesterol biosynthetic process	5.68E-04
23	GO:0015908: fatty acid transport	5.68E-04
24	GO:0034755: iron ion transmembrane transport	5.68E-04
25	GO:0045717: negative regulation of fatty acid biosynthetic process	5.68E-04
26	GO:0080148: negative regulation of response to water deprivation	5.68E-04
27	GO:0010289: homogalacturonan biosynthetic process	5.68E-04
28	GO:0010270: photosystem II oxygen evolving complex assembly	5.68E-04
29	GO:0006816: calcium ion transport	5.76E-04
30	GO:0043447: alkane biosynthetic process	9.22E-04
31	GO:0019563: glycerol catabolic process	9.22E-04
32	GO:0032504: multicellular organism reproduction	9.22E-04
33	GO:0071555: cell wall organization	9.80E-04
34	GO:0005992: trehalose biosynthetic process	1.15E-03
35	GO:0042546: cell wall biogenesis	1.28E-03
36	GO:0034059: response to anoxia	1.32E-03
37	GO:0010731: protein glutathionylation	1.32E-03
38	GO:0016556: mRNA modification	1.32E-03
39	GO:0007231: osmosensory signaling pathway	1.32E-03
40	GO:0051639: actin filament network formation	1.32E-03
41	GO:0016998: cell wall macromolecule catabolic process	1.39E-03
42	GO:0006183: GTP biosynthetic process	1.76E-03
43	GO:2000122: negative regulation of stomatal complex development	1.76E-03
44	GO:0033500: carbohydrate homeostasis	1.76E-03
45	GO:0000919: cell plate assembly	1.76E-03
46	GO:0031122: cytoplasmic microtubule organization	1.76E-03
47	GO:0006749: glutathione metabolic process	1.76E-03
48	GO:0010037: response to carbon dioxide	1.76E-03
49	GO:0006808: regulation of nitrogen utilization	1.76E-03
50	GO:0010222: stem vascular tissue pattern formation	1.76E-03
51	GO:0015976: carbon utilization	1.76E-03
52	GO:0051764: actin crosslink formation	1.76E-03
53	GO:0000271: polysaccharide biosynthetic process	2.10E-03
54	GO:0009247: glycolipid biosynthetic process	2.25E-03
55	GO:0006828: manganese ion transport	2.77E-03
56	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.77E-03
57	GO:0010405: arabinogalactan protein metabolic process	2.77E-03
58	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.79E-03
59	GO:0010583: response to cyclopentenone	2.98E-03
60	GO:0042372: phylloquinone biosynthetic process	3.33E-03
61	GO:0006694: steroid biosynthetic process	3.33E-03
62	GO:0009854: oxidative photosynthetic carbon pathway	3.33E-03
63	GO:0010019: chloroplast-nucleus signaling pathway	3.33E-03
64	GO:0071669: plant-type cell wall organization or biogenesis	3.93E-03
65	GO:0050829: defense response to Gram-negative bacterium	3.93E-03
66	GO:0010444: guard mother cell differentiation	3.93E-03
67	GO:0009610: response to symbiotic fungus	3.93E-03
68	GO:0006955: immune response	3.93E-03
69	GO:0009395: phospholipid catabolic process	3.93E-03
70	GO:0008610: lipid biosynthetic process	4.56E-03
71	GO:0030091: protein repair	4.56E-03
72	GO:0009690: cytokinin metabolic process	4.56E-03
73	GO:0019375: galactolipid biosynthetic process	4.56E-03
74	GO:0009704: de-etiolation	4.56E-03
75	GO:0010411: xyloglucan metabolic process	4.74E-03
76	GO:0009808: lignin metabolic process	5.22E-03
77	GO:0009932: cell tip growth	5.22E-03
78	GO:0030244: cellulose biosynthetic process	5.25E-03
79	GO:0000160: phosphorelay signal transduction system	5.52E-03
80	GO:0007623: circadian rhythm	5.59E-03
81	GO:0009051: pentose-phosphate shunt, oxidative branch	5.92E-03
82	GO:0045337: farnesyl diphosphate biosynthetic process	5.92E-03
83	GO:0033384: geranyl diphosphate biosynthetic process	5.92E-03
84	GO:0006468: protein phosphorylation	6.43E-03
85	GO:0016051: carbohydrate biosynthetic process	6.65E-03
86	GO:0019538: protein metabolic process	7.40E-03
87	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.40E-03
88	GO:0006535: cysteine biosynthetic process from serine	7.40E-03
89	GO:0006415: translational termination	8.19E-03
90	GO:0018119: peptidyl-cysteine S-nitrosylation	8.19E-03
91	GO:0030148: sphingolipid biosynthetic process	8.19E-03
92	GO:0000038: very long-chain fatty acid metabolic process	8.19E-03
93	GO:0055114: oxidation-reduction process	8.98E-03
94	GO:0009658: chloroplast organization	9.74E-03
95	GO:0010588: cotyledon vascular tissue pattern formation	9.85E-03
96	GO:0030048: actin filament-based movement	9.85E-03
97	GO:0006006: glucose metabolic process	9.85E-03
98	GO:0050826: response to freezing	9.85E-03
99	GO:0009718: anthocyanin-containing compound biosynthetic process	9.85E-03
100	GO:0006094: gluconeogenesis	9.85E-03
101	GO:0009735: response to cytokinin	1.06E-02
102	GO:0010143: cutin biosynthetic process	1.07E-02
103	GO:0019253: reductive pentose-phosphate cycle	1.07E-02
104	GO:0009736: cytokinin-activated signaling pathway	1.16E-02
105	GO:0010030: positive regulation of seed germination	1.16E-02
106	GO:0070588: calcium ion transmembrane transport	1.16E-02
107	GO:0006857: oligopeptide transport	1.24E-02
108	GO:0010025: wax biosynthetic process	1.25E-02
109	GO:0006833: water transport	1.25E-02
110	GO:0080167: response to karrikin	1.28E-02
111	GO:0051017: actin filament bundle assembly	1.35E-02
112	GO:0019344: cysteine biosynthetic process	1.35E-02
113	GO:0006096: glycolytic process	1.37E-02
114	GO:0045454: cell redox homeostasis	1.61E-02
115	GO:0016226: iron-sulfur cluster assembly	1.65E-02
116	GO:0009742: brassinosteroid mediated signaling pathway	1.76E-02
117	GO:0019722: calcium-mediated signaling	1.86E-02
118	GO:0009306: protein secretion	1.86E-02
119	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.97E-02
120	GO:0042631: cellular response to water deprivation	2.09E-02
121	GO:0042391: regulation of membrane potential	2.09E-02
122	GO:0080022: primary root development	2.09E-02
123	GO:0034220: ion transmembrane transport	2.09E-02
124	GO:0000413: protein peptidyl-prolyl isomerization	2.09E-02
125	GO:0006629: lipid metabolic process	2.10E-02
126	GO:0045489: pectin biosynthetic process	2.20E-02
127	GO:0010305: leaf vascular tissue pattern formation	2.20E-02
128	GO:0009790: embryo development	2.42E-02
129	GO:0071554: cell wall organization or biogenesis	2.56E-02
130	GO:0000302: response to reactive oxygen species	2.56E-02
131	GO:0016132: brassinosteroid biosynthetic process	2.56E-02
132	GO:0006633: fatty acid biosynthetic process	2.61E-02
133	GO:0007264: small GTPase mediated signal transduction	2.68E-02
134	GO:0048235: pollen sperm cell differentiation	2.68E-02
135	GO:0032502: developmental process	2.68E-02
136	GO:0040008: regulation of growth	2.74E-02
137	GO:0045490: pectin catabolic process	2.87E-02
138	GO:0009567: double fertilization forming a zygote and endosperm	2.93E-02
139	GO:0007267: cell-cell signaling	3.06E-02
140	GO:0051607: defense response to virus	3.19E-02
141	GO:0007166: cell surface receptor signaling pathway	3.27E-02
142	GO:0016126: sterol biosynthetic process	3.32E-02
143	GO:0042128: nitrate assimilation	3.59E-02
144	GO:0015995: chlorophyll biosynthetic process	3.73E-02
145	GO:0016311: dephosphorylation	3.87E-02
146	GO:0018298: protein-chromophore linkage	4.01E-02
147	GO:0009832: plant-type cell wall biogenesis	4.16E-02
148	GO:0009826: unidimensional cell growth	4.26E-02
149	GO:0009834: plant-type secondary cell wall biogenesis	4.30E-02
150	GO:0009407: toxin catabolic process	4.30E-02
151	GO:0048527: lateral root development	4.45E-02
152	GO:0010119: regulation of stomatal movement	4.45E-02
153	GO:0009631: cold acclimation	4.45E-02
154	GO:0009853: photorespiration	4.75E-02
155	GO:0006970: response to osmotic stress	4.75E-02
156	GO:0009860: pollen tube growth	4.75E-02
157	GO:0034599: cellular response to oxidative stress	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
2	GO:0008887: glycerate kinase activity	0.00E+00
3	GO:0050613: delta14-sterol reductase activity	0.00E+00
4	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:1990534: thermospermine oxidase activity	0.00E+00
7	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
8	GO:0050614: delta24-sterol reductase activity	0.00E+00
9	GO:0051753: mannan synthase activity	1.45E-04
10	GO:0051920: peroxiredoxin activity	1.45E-04
11	GO:0016209: antioxidant activity	2.41E-04
12	GO:0004807: triose-phosphate isomerase activity	2.57E-04
13	GO:0042834: peptidoglycan binding	2.57E-04
14	GO:0008568: microtubule-severing ATPase activity	2.57E-04
15	GO:0047560: 3-dehydrosphinganine reductase activity	2.57E-04
16	GO:0015245: fatty acid transporter activity	2.57E-04
17	GO:0004328: formamidase activity	2.57E-04
18	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.57E-04
19	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.57E-04
20	GO:0004805: trehalose-phosphatase activity	4.99E-04
21	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.68E-04
22	GO:0003938: IMP dehydrogenase activity	5.68E-04
23	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.68E-04
24	GO:0005262: calcium channel activity	7.47E-04
25	GO:0017150: tRNA dihydrouridine synthase activity	9.22E-04
26	GO:0050734: hydroxycinnamoyltransferase activity	9.22E-04
27	GO:0004148: dihydrolipoyl dehydrogenase activity	9.22E-04
28	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.22E-04
29	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	9.22E-04
30	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	9.22E-04
31	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.32E-03
32	GO:0035250: UDP-galactosyltransferase activity	1.32E-03
33	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.32E-03
34	GO:0016149: translation release factor activity, codon specific	1.32E-03
35	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.32E-03
36	GO:0001872: (1->3)-beta-D-glucan binding	1.32E-03
37	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.52E-03
38	GO:0052793: pectin acetylesterase activity	1.76E-03
39	GO:0046527: glucosyltransferase activity	1.76E-03
40	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.76E-03
41	GO:0016836: hydro-lyase activity	1.76E-03
42	GO:0005516: calmodulin binding	1.86E-03
43	GO:0016788: hydrolase activity, acting on ester bonds	2.08E-03
44	GO:0004130: cytochrome-c peroxidase activity	2.77E-03
45	GO:0035673: oligopeptide transmembrane transporter activity	2.77E-03
46	GO:0016208: AMP binding	2.77E-03
47	GO:0016688: L-ascorbate peroxidase activity	2.77E-03
48	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.77E-03
49	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.79E-03
50	GO:0000156: phosphorelay response regulator activity	3.18E-03
51	GO:0052689: carboxylic ester hydrolase activity	3.26E-03
52	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.33E-03
53	GO:0005261: cation channel activity	3.33E-03
54	GO:0005242: inward rectifier potassium channel activity	3.33E-03
55	GO:0004124: cysteine synthase activity	3.33E-03
56	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.59E-03
57	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.74E-03
58	GO:0004674: protein serine/threonine kinase activity	4.89E-03
59	GO:0004337: geranyltranstransferase activity	5.92E-03
60	GO:0003747: translation release factor activity	5.92E-03
61	GO:0005381: iron ion transmembrane transporter activity	6.64E-03
62	GO:0005384: manganese ion transmembrane transporter activity	6.64E-03
63	GO:0047617: acyl-CoA hydrolase activity	6.64E-03
64	GO:0003993: acid phosphatase activity	6.96E-03
65	GO:0004672: protein kinase activity	7.10E-03
66	GO:0004161: dimethylallyltranstransferase activity	8.19E-03
67	GO:0047372: acylglycerol lipase activity	8.19E-03
68	GO:0004364: glutathione transferase activity	8.25E-03
69	GO:0015198: oligopeptide transporter activity	9.00E-03
70	GO:0004089: carbonate dehydratase activity	9.85E-03
71	GO:0015095: magnesium ion transmembrane transporter activity	9.85E-03
72	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.00E-02
73	GO:0008131: primary amine oxidase activity	1.07E-02
74	GO:0003774: motor activity	1.07E-02
75	GO:0030553: cGMP binding	1.16E-02
76	GO:0030552: cAMP binding	1.16E-02
77	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.25E-02
78	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.25E-02
79	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.25E-02
80	GO:0005528: FK506 binding	1.35E-02
81	GO:0051536: iron-sulfur cluster binding	1.35E-02
82	GO:0004857: enzyme inhibitor activity	1.35E-02
83	GO:0005216: ion channel activity	1.45E-02
84	GO:0030570: pectate lyase activity	1.76E-02
85	GO:0016760: cellulose synthase (UDP-forming) activity	1.76E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	1.76E-02
87	GO:0008514: organic anion transmembrane transporter activity	1.86E-02
88	GO:0016758: transferase activity, transferring hexosyl groups	2.02E-02
89	GO:0030551: cyclic nucleotide binding	2.09E-02
90	GO:0008080: N-acetyltransferase activity	2.20E-02
91	GO:0003713: transcription coactivator activity	2.20E-02
92	GO:0048038: quinone binding	2.56E-02
93	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.67E-02
94	GO:0046910: pectinesterase inhibitor activity	2.67E-02
95	GO:0051015: actin filament binding	2.80E-02
96	GO:0016413: O-acetyltransferase activity	3.19E-02
97	GO:0016597: amino acid binding	3.19E-02
98	GO:0015250: water channel activity	3.32E-02
99	GO:0016168: chlorophyll binding	3.46E-02
100	GO:0030247: polysaccharide binding	3.73E-02
101	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.01E-02
102	GO:0005096: GTPase activator activity	4.16E-02
103	GO:0004222: metalloendopeptidase activity	4.30E-02
104	GO:0004601: peroxidase activity	4.42E-02
105	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0046658: anchored component of plasma membrane	7.39E-10
3	GO:0031225: anchored component of membrane	3.54E-09
4	GO:0005886: plasma membrane	1.86E-07
5	GO:0009505: plant-type cell wall	2.47E-05
6	GO:0009507: chloroplast	3.57E-05
7	GO:0009535: chloroplast thylakoid membrane	1.95E-04
8	GO:0009941: chloroplast envelope	2.10E-04
9	GO:0009534: chloroplast thylakoid	3.06E-04
10	GO:0009570: chloroplast stroma	6.43E-04
11	GO:0009897: external side of plasma membrane	9.22E-04
12	GO:0009509: chromoplast	9.22E-04
13	GO:0016021: integral component of membrane	1.22E-03
14	GO:0032432: actin filament bundle	1.32E-03
15	GO:0009543: chloroplast thylakoid lumen	3.71E-03
16	GO:0009533: chloroplast stromal thylakoid	3.93E-03
17	GO:0005576: extracellular region	4.18E-03
18	GO:0009579: thylakoid	4.41E-03
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.92E-03
20	GO:0000139: Golgi membrane	6.06E-03
21	GO:0048046: apoplast	6.10E-03
22	GO:0016459: myosin complex	7.40E-03
23	GO:0031977: thylakoid lumen	7.91E-03
24	GO:0005887: integral component of plasma membrane	8.07E-03
25	GO:0005884: actin filament	8.19E-03
26	GO:0030176: integral component of endoplasmic reticulum membrane	1.16E-02
27	GO:0009536: plastid	1.57E-02
28	GO:0010287: plastoglobule	1.97E-02
29	GO:0009523: photosystem II	2.43E-02
30	GO:0005802: trans-Golgi network	2.45E-02
31	GO:0071944: cell periphery	2.80E-02
32	GO:0005794: Golgi apparatus	2.80E-02
33	GO:0005768: endosome	2.96E-02
34	GO:0005778: peroxisomal membrane	3.06E-02
35	GO:0016020: membrane	3.06E-02
36	GO:0000151: ubiquitin ligase complex	4.01E-02
37	GO:0015934: large ribosomal subunit	4.45E-02
38	GO:0005618: cell wall	4.63E-02