co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G51400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0015979: photosynthesis	1.39E-10
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.01E-07
5	GO:0006000: fructose metabolic process	1.53E-06
6	GO:0009773: photosynthetic electron transport in photosystem I	1.87E-06
7	GO:0006094: gluconeogenesis	3.06E-06
8	GO:0015976: carbon utilization	6.94E-06
9	GO:0009768: photosynthesis, light harvesting in photosystem I	8.15E-06
10	GO:0006002: fructose 6-phosphate metabolic process	5.72E-05
11	GO:0009657: plastid organization	5.72E-05
12	GO:0000481: maturation of 5S rRNA	8.61E-05
13	GO:0034337: RNA folding	8.61E-05
14	GO:0010205: photoinhibition	8.63E-05
15	GO:0043085: positive regulation of catalytic activity	1.22E-04
16	GO:0009767: photosynthetic electron transport chain	1.63E-04
17	GO:0005986: sucrose biosynthetic process	1.63E-04
18	GO:0010114: response to red light	1.72E-04
19	GO:0035304: regulation of protein dephosphorylation	2.04E-04
20	GO:0006810: transport	3.29E-04
21	GO:0006013: mannose metabolic process	3.42E-04
22	GO:0006518: peptide metabolic process	3.42E-04
23	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.92E-04
24	GO:0051513: regulation of monopolar cell growth	4.92E-04
25	GO:0010037: response to carbon dioxide	6.55E-04
26	GO:0010023: proanthocyanidin biosynthetic process	6.55E-04
27	GO:0045727: positive regulation of translation	6.55E-04
28	GO:0015994: chlorophyll metabolic process	6.55E-04
29	GO:2000122: negative regulation of stomatal complex development	6.55E-04
30	GO:0006461: protein complex assembly	8.29E-04
31	GO:0006596: polyamine biosynthetic process	1.01E-03
32	GO:0048759: xylem vessel member cell differentiation	1.01E-03
33	GO:0042549: photosystem II stabilization	1.01E-03
34	GO:1902456: regulation of stomatal opening	1.01E-03
35	GO:0009735: response to cytokinin	1.03E-03
36	GO:0015995: chlorophyll biosynthetic process	1.07E-03
37	GO:0018298: protein-chromophore linkage	1.18E-03
38	GO:0010019: chloroplast-nucleus signaling pathway	1.20E-03
39	GO:0010218: response to far red light	1.29E-03
40	GO:0009772: photosynthetic electron transport in photosystem II	1.41E-03
41	GO:0010196: nonphotochemical quenching	1.41E-03
42	GO:0032508: DNA duplex unwinding	1.63E-03
43	GO:0009642: response to light intensity	1.63E-03
44	GO:0032544: plastid translation	1.86E-03
45	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.10E-03
46	GO:0010206: photosystem II repair	2.10E-03
47	GO:0009638: phototropism	2.35E-03
48	GO:0048829: root cap development	2.61E-03
49	GO:0006949: syncytium formation	2.61E-03
50	GO:0009750: response to fructose	2.87E-03
51	GO:0009698: phenylpropanoid metabolic process	2.87E-03
52	GO:0019684: photosynthesis, light reaction	2.87E-03
53	GO:0005983: starch catabolic process	3.15E-03
54	GO:0018107: peptidyl-threonine phosphorylation	3.43E-03
55	GO:0009718: anthocyanin-containing compound biosynthetic process	3.43E-03
56	GO:0019253: reductive pentose-phosphate cycle	3.73E-03
57	GO:0010207: photosystem II assembly	3.73E-03
58	GO:0005985: sucrose metabolic process	4.03E-03
59	GO:0003333: amino acid transmembrane transport	5.32E-03
60	GO:0061077: chaperone-mediated protein folding	5.32E-03
61	GO:0019748: secondary metabolic process	5.66E-03
62	GO:0010017: red or far-red light signaling pathway	5.66E-03
63	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	6.01E-03
64	GO:0010087: phloem or xylem histogenesis	7.10E-03
65	GO:0006662: glycerol ether metabolic process	7.48E-03
66	GO:0009958: positive gravitropism	7.48E-03
67	GO:0009826: unidimensional cell growth	9.21E-03
68	GO:0009828: plant-type cell wall loosening	9.91E-03
69	GO:0009737: response to abscisic acid	1.08E-02
70	GO:0009723: response to ethylene	1.11E-02
71	GO:0016311: dephosphorylation	1.31E-02
72	GO:0009817: defense response to fungus, incompatible interaction	1.35E-02
73	GO:0045454: cell redox homeostasis	1.42E-02
74	GO:0010119: regulation of stomatal movement	1.50E-02
75	GO:0042742: defense response to bacterium	1.52E-02
76	GO:0006865: amino acid transport	1.55E-02
77	GO:0009637: response to blue light	1.60E-02
78	GO:0034599: cellular response to oxidative stress	1.65E-02
79	GO:0032259: methylation	1.68E-02
80	GO:0006508: proteolysis	1.87E-02
81	GO:0009926: auxin polar transport	1.92E-02
82	GO:0009644: response to high light intensity	2.02E-02
83	GO:0009409: response to cold	2.23E-02
84	GO:0009664: plant-type cell wall organization	2.25E-02
85	GO:0006364: rRNA processing	2.37E-02
86	GO:0009585: red, far-red light phototransduction	2.37E-02
87	GO:0051603: proteolysis involved in cellular protein catabolic process	2.43E-02
88	GO:0006417: regulation of translation	2.55E-02
89	GO:0006096: glycolytic process	2.67E-02
90	GO:0006396: RNA processing	3.11E-02
91	GO:0018105: peptidyl-serine phosphorylation	3.11E-02
92	GO:0035556: intracellular signal transduction	3.29E-02
93	GO:0006413: translational initiation	4.27E-02
94	GO:0007623: circadian rhythm	4.49E-02
95	GO:0009739: response to gibberellin	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
3	GO:0010487: thermospermine synthase activity	0.00E+00
4	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.01E-07
5	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.01E-07
6	GO:0005528: FK506 binding	6.84E-06
7	GO:0016768: spermine synthase activity	8.61E-05
8	GO:0046906: tetrapyrrole binding	8.61E-05
9	GO:0010242: oxygen evolving activity	8.61E-05
10	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	8.61E-05
11	GO:0004089: carbonate dehydratase activity	1.63E-04
12	GO:0004185: serine-type carboxypeptidase activity	1.72E-04
13	GO:0008266: poly(U) RNA binding	1.86E-04
14	GO:0047746: chlorophyllase activity	2.04E-04
15	GO:0016868: intramolecular transferase activity, phosphotransferases	2.04E-04
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.13E-04
17	GO:0031409: pigment binding	2.36E-04
18	GO:0003727: single-stranded RNA binding	4.16E-04
19	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.55E-04
20	GO:0010328: auxin influx transmembrane transporter activity	6.55E-04
21	GO:0016168: chlorophyll binding	9.62E-04
22	GO:0004332: fructose-bisphosphate aldolase activity	1.01E-03
23	GO:0004602: glutathione peroxidase activity	1.20E-03
24	GO:0004559: alpha-mannosidase activity	1.20E-03
25	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.20E-03
26	GO:0019899: enzyme binding	1.41E-03
27	GO:0008047: enzyme activator activity	2.61E-03
28	GO:0015386: potassium:proton antiporter activity	2.87E-03
29	GO:0031072: heat shock protein binding	3.43E-03
30	GO:0015079: potassium ion transmembrane transporter activity	4.98E-03
31	GO:0004176: ATP-dependent peptidase activity	5.32E-03
32	GO:0004707: MAP kinase activity	5.32E-03
33	GO:0003756: protein disulfide isomerase activity	6.36E-03
34	GO:0047134: protein-disulfide reductase activity	6.73E-03
35	GO:0004791: thioredoxin-disulfide reductase activity	7.87E-03
36	GO:0050662: coenzyme binding	7.87E-03
37	GO:0048038: quinone binding	8.66E-03
38	GO:0004518: nuclease activity	9.07E-03
39	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.48E-03
40	GO:0005509: calcium ion binding	1.38E-02
41	GO:0004222: metalloendopeptidase activity	1.45E-02
42	GO:0030145: manganese ion binding	1.50E-02
43	GO:0043621: protein self-association	2.02E-02
44	GO:0015293: symporter activity	2.08E-02
45	GO:0015171: amino acid transmembrane transporter activity	2.55E-02
46	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.73E-02
47	GO:0051082: unfolded protein binding	3.04E-02
48	GO:0015035: protein disulfide oxidoreductase activity	3.11E-02
49	GO:0019843: rRNA binding	3.57E-02
50	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.27E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	1.23E-28
4	GO:0009534: chloroplast thylakoid	6.19E-27
5	GO:0009507: chloroplast	3.86E-21
6	GO:0009941: chloroplast envelope	2.14E-15
7	GO:0009543: chloroplast thylakoid lumen	8.17E-13
8	GO:0030095: chloroplast photosystem II	1.25E-12
9	GO:0009579: thylakoid	2.77E-11
10	GO:0009570: chloroplast stroma	9.55E-09
11	GO:0009523: photosystem II	5.75E-07
12	GO:0009654: photosystem II oxygen evolving complex	8.15E-06
13	GO:0009522: photosystem I	2.51E-05
14	GO:0031969: chloroplast membrane	2.58E-05
15	GO:0019898: extrinsic component of membrane	2.81E-05
16	GO:0009533: chloroplast stromal thylakoid	3.42E-05
17	GO:0010287: plastoglobule	4.33E-05
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.10E-05
19	GO:0009344: nitrite reductase complex [NAD(P)H]	8.61E-05
20	GO:0009783: photosystem II antenna complex	8.61E-05
21	GO:0010319: stromule	8.18E-04
22	GO:0009538: photosystem I reaction center	1.63E-03
23	GO:0031977: thylakoid lumen	1.75E-03
24	GO:0042644: chloroplast nucleoid	2.10E-03
25	GO:0032040: small-subunit processome	3.15E-03
26	GO:0009508: plastid chromosome	3.43E-03
27	GO:0042651: thylakoid membrane	4.98E-03
28	GO:0048046: apoplast	7.12E-03
29	GO:0046658: anchored component of plasma membrane	8.18E-03
30	GO:0009295: nucleoid	1.03E-02
31	GO:0016021: integral component of membrane	2.64E-02
32	GO:0005618: cell wall	2.73E-02
33	GO:0009706: chloroplast inner membrane	3.04E-02
34	GO:0016020: membrane	3.56E-02
35	GO:0005623: cell	3.64E-02