Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G51110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000505: regulation of energy homeostasis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0019323: pentose catabolic process0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0046322: negative regulation of fatty acid oxidation0.00E+00
6GO:2000121: regulation of removal of superoxide radicals0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
9GO:0090042: tubulin deacetylation0.00E+00
10GO:0042493: response to drug0.00E+00
11GO:0015979: photosynthesis2.80E-13
12GO:0009773: photosynthetic electron transport in photosystem I1.28E-11
13GO:0010206: photosystem II repair1.41E-06
14GO:0010207: photosystem II assembly1.06E-05
15GO:0009735: response to cytokinin2.75E-05
16GO:0015995: chlorophyll biosynthetic process3.24E-05
17GO:0006810: transport3.83E-05
18GO:0034220: ion transmembrane transport7.50E-05
19GO:0009052: pentose-phosphate shunt, non-oxidative branch8.48E-05
20GO:0080170: hydrogen peroxide transmembrane transport8.48E-05
21GO:0009765: photosynthesis, light harvesting1.46E-04
22GO:0015994: chlorophyll metabolic process1.46E-04
23GO:0006546: glycine catabolic process1.46E-04
24GO:0016120: carotene biosynthetic process2.24E-04
25GO:0006833: water transport2.94E-04
26GO:0010411: xyloglucan metabolic process3.21E-04
27GO:0051247: positive regulation of protein metabolic process5.18E-04
28GO:1902458: positive regulation of stomatal opening5.18E-04
29GO:0010028: xanthophyll cycle5.18E-04
30GO:0034337: RNA folding5.18E-04
31GO:2000905: negative regulation of starch metabolic process5.18E-04
32GO:0071588: hydrogen peroxide mediated signaling pathway5.18E-04
33GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.18E-04
34GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.18E-04
35GO:0044262: cellular carbohydrate metabolic process5.18E-04
36GO:0043266: regulation of potassium ion transport5.18E-04
37GO:0000481: maturation of 5S rRNA5.18E-04
38GO:0006106: fumarate metabolic process5.18E-04
39GO:2000021: regulation of ion homeostasis5.18E-04
40GO:0010196: nonphotochemical quenching5.41E-04
41GO:0009645: response to low light intensity stimulus5.41E-04
42GO:0032544: plastid translation8.22E-04
43GO:0009409: response to cold9.79E-04
44GO:0016122: xanthophyll metabolic process1.11E-03
45GO:1903426: regulation of reactive oxygen species biosynthetic process1.11E-03
46GO:0030388: fructose 1,6-bisphosphate metabolic process1.11E-03
47GO:0019388: galactose catabolic process1.11E-03
48GO:1900871: chloroplast mRNA modification1.11E-03
49GO:0010541: acropetal auxin transport1.11E-03
50GO:0001736: establishment of planar polarity1.11E-03
51GO:0019684: photosynthesis, light reaction1.56E-03
52GO:0010027: thylakoid membrane organization1.73E-03
53GO:2001295: malonyl-CoA biosynthetic process1.82E-03
54GO:0048586: regulation of long-day photoperiodism, flowering1.82E-03
55GO:0000280: nuclear division1.82E-03
56GO:0090391: granum assembly1.82E-03
57GO:0006000: fructose metabolic process1.82E-03
58GO:0006518: peptide metabolic process1.82E-03
59GO:1901562: response to paraquat1.82E-03
60GO:0010160: formation of animal organ boundary1.82E-03
61GO:0045493: xylan catabolic process1.82E-03
62GO:0009767: photosynthetic electron transport chain2.03E-03
63GO:0009624: response to nematode2.19E-03
64GO:0010143: cutin biosynthetic process2.29E-03
65GO:0009817: defense response to fungus, incompatible interaction2.43E-03
66GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.64E-03
67GO:0051513: regulation of monopolar cell growth2.64E-03
68GO:0007231: osmosensory signaling pathway2.64E-03
69GO:0071484: cellular response to light intensity2.64E-03
70GO:0051639: actin filament network formation2.64E-03
71GO:0009152: purine ribonucleotide biosynthetic process2.64E-03
72GO:0046653: tetrahydrofolate metabolic process2.64E-03
73GO:0009650: UV protection2.64E-03
74GO:0010306: rhamnogalacturonan II biosynthetic process2.64E-03
75GO:0043481: anthocyanin accumulation in tissues in response to UV light2.64E-03
76GO:1901332: negative regulation of lateral root development2.64E-03
77GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.64E-03
78GO:0009590: detection of gravity2.64E-03
79GO:0046836: glycolipid transport2.64E-03
80GO:0010218: response to far red light2.76E-03
81GO:0009637: response to blue light3.29E-03
82GO:0034599: cellular response to oxidative stress3.49E-03
83GO:0009768: photosynthesis, light harvesting in photosystem I3.51E-03
84GO:0010109: regulation of photosynthesis3.56E-03
85GO:0015976: carbon utilization3.56E-03
86GO:0051764: actin crosslink formation3.56E-03
87GO:0019464: glycine decarboxylation via glycine cleavage system3.56E-03
88GO:2000306: positive regulation of photomorphogenesis3.56E-03
89GO:2000122: negative regulation of stomatal complex development3.56E-03
90GO:0045727: positive regulation of translation3.56E-03
91GO:0030104: water homeostasis3.56E-03
92GO:0033500: carbohydrate homeostasis3.56E-03
93GO:0010021: amylopectin biosynthetic process3.56E-03
94GO:0010037: response to carbon dioxide3.56E-03
95GO:0061077: chaperone-mediated protein folding3.86E-03
96GO:0006461: protein complex assembly4.57E-03
97GO:0009107: lipoate biosynthetic process4.57E-03
98GO:0016123: xanthophyll biosynthetic process4.57E-03
99GO:0034052: positive regulation of plant-type hypersensitive response4.57E-03
100GO:0045038: protein import into chloroplast thylakoid membrane4.57E-03
101GO:0042546: cell wall biogenesis4.79E-03
102GO:0045454: cell redox homeostasis5.09E-03
103GO:0010256: endomembrane system organization5.66E-03
104GO:0060918: auxin transport5.66E-03
105GO:0009958: positive gravitropism6.36E-03
106GO:0010019: chloroplast-nucleus signaling pathway6.83E-03
107GO:0071470: cellular response to osmotic stress6.83E-03
108GO:0009612: response to mechanical stimulus6.83E-03
109GO:0015986: ATP synthesis coupled proton transport6.84E-03
110GO:0019252: starch biosynthetic process7.35E-03
111GO:0000302: response to reactive oxygen species7.87E-03
112GO:0009772: photosynthetic electron transport in photosystem II8.09E-03
113GO:0009769: photosynthesis, light harvesting in photosystem II8.09E-03
114GO:0005978: glycogen biosynthetic process9.42E-03
115GO:0009787: regulation of abscisic acid-activated signaling pathway9.42E-03
116GO:0043068: positive regulation of programmed cell death9.42E-03
117GO:0009819: drought recovery9.42E-03
118GO:0032508: DNA duplex unwinding9.42E-03
119GO:2000070: regulation of response to water deprivation9.42E-03
120GO:0017004: cytochrome complex assembly1.08E-02
121GO:0006002: fructose 6-phosphate metabolic process1.08E-02
122GO:0071482: cellular response to light stimulus1.08E-02
123GO:0015996: chlorophyll catabolic process1.08E-02
124GO:0007186: G-protein coupled receptor signaling pathway1.08E-02
125GO:0009657: plastid organization1.08E-02
126GO:0090305: nucleic acid phosphodiester bond hydrolysis1.23E-02
127GO:0006754: ATP biosynthetic process1.23E-02
128GO:0042128: nitrate assimilation1.28E-02
129GO:0009638: phototropism1.38E-02
130GO:0018298: protein-chromophore linkage1.50E-02
131GO:0043069: negative regulation of programmed cell death1.55E-02
132GO:0048829: root cap development1.55E-02
133GO:0010311: lateral root formation1.57E-02
134GO:0048765: root hair cell differentiation1.71E-02
135GO:0009684: indoleacetic acid biosynthetic process1.71E-02
136GO:0010015: root morphogenesis1.71E-02
137GO:0006816: calcium ion transport1.71E-02
138GO:0009631: cold acclimation1.73E-02
139GO:0006865: amino acid transport1.82E-02
140GO:0006633: fatty acid biosynthetic process1.87E-02
141GO:0008361: regulation of cell size1.89E-02
142GO:0016024: CDP-diacylglycerol biosynthetic process1.89E-02
143GO:0045037: protein import into chloroplast stroma1.89E-02
144GO:0006094: gluconeogenesis2.07E-02
145GO:0005986: sucrose biosynthetic process2.07E-02
146GO:0006108: malate metabolic process2.07E-02
147GO:0006006: glucose metabolic process2.07E-02
148GO:0030001: metal ion transport2.17E-02
149GO:0010540: basipetal auxin transport2.25E-02
150GO:0019253: reductive pentose-phosphate cycle2.25E-02
151GO:0006631: fatty acid metabolic process2.26E-02
152GO:0009414: response to water deprivation2.43E-02
153GO:0005985: sucrose metabolic process2.44E-02
154GO:0010030: positive regulation of seed germination2.44E-02
155GO:0070588: calcium ion transmembrane transport2.44E-02
156GO:0009926: auxin polar transport2.45E-02
157GO:0010114: response to red light2.45E-02
158GO:0071555: cell wall organization2.54E-02
159GO:0042742: defense response to bacterium2.54E-02
160GO:0009644: response to high light intensity2.66E-02
161GO:0008152: metabolic process2.83E-02
162GO:0000027: ribosomal large subunit assembly2.84E-02
163GO:0051017: actin filament bundle assembly2.84E-02
164GO:0016575: histone deacetylation3.05E-02
165GO:0007017: microtubule-based process3.05E-02
166GO:0009664: plant-type cell wall organization3.08E-02
167GO:0048511: rhythmic process3.26E-02
168GO:0010431: seed maturation3.26E-02
169GO:0009269: response to desiccation3.26E-02
170GO:0003333: amino acid transmembrane transport3.26E-02
171GO:0009814: defense response, incompatible interaction3.48E-02
172GO:0035428: hexose transmembrane transport3.48E-02
173GO:0009658: chloroplast organization3.63E-02
174GO:0006012: galactose metabolic process3.70E-02
175GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.70E-02
176GO:0009411: response to UV3.70E-02
177GO:0048443: stamen development3.93E-02
178GO:0016117: carotenoid biosynthetic process4.16E-02
179GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.16E-02
180GO:0042631: cellular response to water deprivation4.40E-02
181GO:0000413: protein peptidyl-prolyl isomerization4.40E-02
182GO:0009740: gibberellic acid mediated signaling pathway4.42E-02
183GO:0009737: response to abscisic acid4.55E-02
184GO:0048868: pollen tube development4.64E-02
185GO:0046323: glucose import4.64E-02
186GO:0010182: sugar mediated signaling pathway4.64E-02
187GO:0042752: regulation of circadian rhythm4.88E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
4GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
5GO:0043864: indoleacetamide hydrolase activity0.00E+00
6GO:0046422: violaxanthin de-epoxidase activity0.00E+00
7GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
10GO:0051721: protein phosphatase 2A binding0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0045435: lycopene epsilon cyclase activity0.00E+00
13GO:0016851: magnesium chelatase activity6.43E-07
14GO:0030385: ferredoxin:thioredoxin reductase activity1.18E-05
15GO:0051920: peroxiredoxin activity1.31E-05
16GO:0005528: FK506 binding2.18E-05
17GO:0016209: antioxidant activity3.04E-05
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.69E-04
19GO:0015250: water channel activity2.44E-04
20GO:0008200: ion channel inhibitor activity3.16E-04
21GO:0004130: cytochrome-c peroxidase activity3.16E-04
22GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.22E-04
23GO:0004017: adenylate kinase activity4.22E-04
24GO:0004333: fumarate hydratase activity5.18E-04
25GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.18E-04
26GO:0080132: fatty acid alpha-hydroxylase activity5.18E-04
27GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity5.18E-04
28GO:0019843: rRNA binding6.65E-04
29GO:0004033: aldo-keto reductase (NADP) activity6.75E-04
30GO:0005509: calcium ion binding9.90E-04
31GO:0016762: xyloglucan:xyloglucosyl transferase activity1.08E-03
32GO:0047746: chlorophyllase activity1.11E-03
33GO:0016868: intramolecular transferase activity, phosphotransferases1.11E-03
34GO:0004047: aminomethyltransferase activity1.11E-03
35GO:0033201: alpha-1,4-glucan synthase activity1.11E-03
36GO:0004750: ribulose-phosphate 3-epimerase activity1.11E-03
37GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.11E-03
38GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.11E-03
39GO:0004614: phosphoglucomutase activity1.11E-03
40GO:0008967: phosphoglycolate phosphatase activity1.11E-03
41GO:0008864: formyltetrahydrofolate deformylase activity1.82E-03
42GO:0004324: ferredoxin-NADP+ reductase activity1.82E-03
43GO:0010277: chlorophyllide a oxygenase [overall] activity1.82E-03
44GO:0004373: glycogen (starch) synthase activity1.82E-03
45GO:0050734: hydroxycinnamoyltransferase activity1.82E-03
46GO:0016992: lipoate synthase activity1.82E-03
47GO:0004075: biotin carboxylase activity1.82E-03
48GO:0004751: ribose-5-phosphate isomerase activity1.82E-03
49GO:0030267: glyoxylate reductase (NADP) activity1.82E-03
50GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.82E-03
51GO:0016798: hydrolase activity, acting on glycosyl bonds2.13E-03
52GO:0008266: poly(U) RNA binding2.29E-03
53GO:0017089: glycolipid transporter activity2.64E-03
54GO:0004375: glycine dehydrogenase (decarboxylating) activity2.64E-03
55GO:0019201: nucleotide kinase activity2.64E-03
56GO:0048487: beta-tubulin binding2.64E-03
57GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.64E-03
58GO:0043023: ribosomal large subunit binding2.64E-03
59GO:0031409: pigment binding2.87E-03
60GO:0004659: prenyltransferase activity3.56E-03
61GO:0010011: auxin binding3.56E-03
62GO:0016836: hydro-lyase activity3.56E-03
63GO:0051861: glycolipid binding3.56E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.56E-03
65GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.56E-03
66GO:0009011: starch synthase activity3.56E-03
67GO:0010328: auxin influx transmembrane transporter activity3.56E-03
68GO:1990137: plant seed peroxidase activity3.56E-03
69GO:0009044: xylan 1,4-beta-xylosidase activity3.56E-03
70GO:0046556: alpha-L-arabinofuranosidase activity3.56E-03
71GO:0003989: acetyl-CoA carboxylase activity4.57E-03
72GO:0003959: NADPH dehydrogenase activity4.57E-03
73GO:0004040: amidase activity4.57E-03
74GO:0030570: pectate lyase activity4.62E-03
75GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.66E-03
76GO:0016688: L-ascorbate peroxidase activity5.66E-03
77GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.66E-03
78GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.83E-03
79GO:0004602: glutathione peroxidase activity6.83E-03
80GO:0004034: aldose 1-epimerase activity9.42E-03
81GO:0004601: peroxidase activity9.88E-03
82GO:0016788: hydrolase activity, acting on ester bonds1.02E-02
83GO:0015078: hydrogen ion transmembrane transporter activity1.08E-02
84GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.08E-02
85GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.12E-02
86GO:0016168: chlorophyll binding1.21E-02
87GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.23E-02
88GO:0008236: serine-type peptidase activity1.42E-02
89GO:0030234: enzyme regulator activity1.55E-02
90GO:0015020: glucuronosyltransferase activity1.55E-02
91GO:0004222: metalloendopeptidase activity1.65E-02
92GO:0044183: protein binding involved in protein folding1.71E-02
93GO:0047372: acylglycerol lipase activity1.71E-02
94GO:0008378: galactosyltransferase activity1.89E-02
95GO:0016787: hydrolase activity2.03E-02
96GO:0004089: carbonate dehydratase activity2.07E-02
97GO:0031072: heat shock protein binding2.07E-02
98GO:0005262: calcium channel activity2.07E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity2.07E-02
100GO:0010329: auxin efflux transmembrane transporter activity2.07E-02
101GO:0051537: 2 iron, 2 sulfur cluster binding2.66E-02
102GO:0015293: symporter activity2.76E-02
103GO:0004407: histone deacetylase activity2.84E-02
104GO:0004176: ATP-dependent peptidase activity3.26E-02
105GO:0015171: amino acid transmembrane transporter activity3.66E-02
106GO:0003756: protein disulfide isomerase activity3.93E-02
107GO:0008289: lipid binding3.97E-02
108GO:0003735: structural constituent of ribosome3.98E-02
109GO:0046872: metal ion binding4.16E-02
110GO:0016491: oxidoreductase activity4.21E-02
111GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.64E-02
112GO:0016853: isomerase activity4.88E-02
113GO:0005355: glucose transmembrane transporter activity4.88E-02
114GO:0050662: coenzyme binding4.88E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
4GO:0009507: chloroplast1.22E-61
5GO:0009534: chloroplast thylakoid2.27E-55
6GO:0009535: chloroplast thylakoid membrane3.32E-53
7GO:0009941: chloroplast envelope8.78E-34
8GO:0009543: chloroplast thylakoid lumen2.19E-33
9GO:0009570: chloroplast stroma1.14E-32
10GO:0009579: thylakoid1.57E-27
11GO:0031977: thylakoid lumen5.23E-19
12GO:0030095: chloroplast photosystem II8.38E-13
13GO:0009654: photosystem II oxygen evolving complex4.51E-10
14GO:0019898: extrinsic component of membrane8.72E-09
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.93E-08
16GO:0010007: magnesium chelatase complex1.35E-07
17GO:0048046: apoplast2.15E-07
18GO:0010319: stromule8.16E-07
19GO:0030093: chloroplast photosystem I1.18E-05
20GO:0009533: chloroplast stromal thylakoid2.06E-05
21GO:0031969: chloroplast membrane4.31E-05
22GO:0010287: plastoglobule1.05E-04
23GO:0016020: membrane3.79E-04
24GO:0009706: chloroplast inner membrane4.43E-04
25GO:0045239: tricarboxylic acid cycle enzyme complex5.18E-04
26GO:0043674: columella5.18E-04
27GO:0009515: granal stacked thylakoid5.18E-04
28GO:0005618: cell wall6.67E-04
29GO:0009522: photosystem I9.10E-04
30GO:0009523: photosystem II9.95E-04
31GO:0009528: plastid inner membrane1.82E-03
32GO:0009508: plastid chromosome2.03E-03
33GO:0009505: plant-type cell wall2.19E-03
34GO:0030076: light-harvesting complex2.57E-03
35GO:0009531: secondary cell wall2.64E-03
36GO:0005960: glycine cleavage complex2.64E-03
37GO:0032432: actin filament bundle2.64E-03
38GO:0042651: thylakoid membrane3.51E-03
39GO:0009527: plastid outer membrane3.56E-03
40GO:0009517: PSII associated light-harvesting complex II3.56E-03
41GO:0009544: chloroplast ATP synthase complex3.56E-03
42GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)5.66E-03
43GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)5.66E-03
44GO:0009986: cell surface8.09E-03
45GO:0042807: central vacuole8.09E-03
46GO:0009501: amyloplast9.42E-03
47GO:0016021: integral component of membrane9.93E-03
48GO:0009295: nucleoid1.02E-02
49GO:0005811: lipid particle1.08E-02
50GO:0042644: chloroplast nucleoid1.23E-02
51GO:0045298: tubulin complex1.23E-02
52GO:0005887: integral component of plasma membrane1.25E-02
53GO:0009707: chloroplast outer membrane1.50E-02
54GO:0005884: actin filament1.71E-02
55GO:0032040: small-subunit processome1.89E-02
56GO:0009705: plant-type vacuole membrane2.10E-02
57GO:0005875: microtubule associated complex2.64E-02
58GO:0015935: small ribosomal subunit3.26E-02
59GO:0009532: plastid stroma3.26E-02
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Gene type



Gene DE type