Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G50900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:2000121: regulation of removal of superoxide radicals0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0006642: triglyceride mobilization0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0018023: peptidyl-lysine trimethylation0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
13GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
14GO:1902458: positive regulation of stomatal opening0.00E+00
15GO:0070125: mitochondrial translational elongation0.00E+00
16GO:0015995: chlorophyll biosynthetic process6.13E-19
17GO:0015979: photosynthesis1.44E-12
18GO:0006412: translation3.35E-12
19GO:0032544: plastid translation1.39E-11
20GO:0009658: chloroplast organization9.86E-10
21GO:0010027: thylakoid membrane organization6.10E-09
22GO:0006782: protoporphyrinogen IX biosynthetic process1.15E-08
23GO:0042254: ribosome biogenesis1.74E-08
24GO:0009735: response to cytokinin2.85E-07
25GO:0006783: heme biosynthetic process3.98E-07
26GO:1903426: regulation of reactive oxygen species biosynthetic process5.67E-06
27GO:0090391: granum assembly1.99E-05
28GO:0006779: porphyrin-containing compound biosynthetic process3.17E-05
29GO:0009773: photosynthetic electron transport in photosystem I5.22E-05
30GO:0019253: reductive pentose-phosphate cycle9.60E-05
31GO:0045038: protein import into chloroplast thylakoid membrane1.22E-04
32GO:0009409: response to cold1.79E-04
33GO:0006418: tRNA aminoacylation for protein translation1.81E-04
34GO:1901259: chloroplast rRNA processing2.38E-04
35GO:0010196: nonphotochemical quenching3.09E-04
36GO:0009772: photosynthetic electron transport in photosystem II3.09E-04
37GO:0009443: pyridoxal 5'-phosphate salvage3.55E-04
38GO:0006438: valyl-tRNA aminoacylation3.55E-04
39GO:0043489: RNA stabilization3.55E-04
40GO:1904966: positive regulation of vitamin E biosynthetic process3.55E-04
41GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.55E-04
42GO:1904964: positive regulation of phytol biosynthetic process3.55E-04
43GO:0042371: vitamin K biosynthetic process3.55E-04
44GO:0006436: tryptophanyl-tRNA aminoacylation3.55E-04
45GO:0034337: RNA folding3.55E-04
46GO:0042255: ribosome assembly3.89E-04
47GO:0006353: DNA-templated transcription, termination3.89E-04
48GO:2000070: regulation of response to water deprivation3.89E-04
49GO:0048564: photosystem I assembly3.89E-04
50GO:0032502: developmental process5.82E-04
51GO:1902326: positive regulation of chlorophyll biosynthetic process7.72E-04
52GO:0018026: peptidyl-lysine monomethylation7.72E-04
53GO:0080183: response to photooxidative stress7.72E-04
54GO:0008616: queuosine biosynthetic process7.72E-04
55GO:0006729: tetrahydrobiopterin biosynthetic process7.72E-04
56GO:0006568: tryptophan metabolic process7.72E-04
57GO:0030388: fructose 1,6-bisphosphate metabolic process7.72E-04
58GO:0010275: NAD(P)H dehydrogenase complex assembly7.72E-04
59GO:0043039: tRNA aminoacylation7.72E-04
60GO:0019684: photosynthesis, light reaction9.04E-04
61GO:0009627: systemic acquired resistance9.79E-04
62GO:0045037: protein import into chloroplast stroma1.03E-03
63GO:0006094: gluconeogenesis1.17E-03
64GO:0015714: phosphoenolpyruvate transport1.25E-03
65GO:0006000: fructose metabolic process1.25E-03
66GO:0006954: inflammatory response1.25E-03
67GO:0019563: glycerol catabolic process1.25E-03
68GO:0006518: peptide metabolic process1.25E-03
69GO:0051604: protein maturation1.25E-03
70GO:0071492: cellular response to UV-A1.25E-03
71GO:0032504: multicellular organism reproduction1.25E-03
72GO:0010207: photosystem II assembly1.31E-03
73GO:0009790: embryo development1.65E-03
74GO:0006241: CTP biosynthetic process1.80E-03
75GO:0009052: pentose-phosphate shunt, non-oxidative branch1.80E-03
76GO:0006165: nucleoside diphosphate phosphorylation1.80E-03
77GO:0006228: UTP biosynthetic process1.80E-03
78GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.80E-03
79GO:2001141: regulation of RNA biosynthetic process1.80E-03
80GO:0051085: chaperone mediated protein folding requiring cofactor1.80E-03
81GO:0045454: cell redox homeostasis1.86E-03
82GO:0006183: GTP biosynthetic process2.42E-03
83GO:2000122: negative regulation of stomatal complex development2.42E-03
84GO:0006021: inositol biosynthetic process2.42E-03
85GO:0015713: phosphoglycerate transport2.42E-03
86GO:0044206: UMP salvage2.42E-03
87GO:0010037: response to carbon dioxide2.42E-03
88GO:0015976: carbon utilization2.42E-03
89GO:0071486: cellular response to high light intensity2.42E-03
90GO:0009765: photosynthesis, light harvesting2.42E-03
91GO:0042742: defense response to bacterium2.77E-03
92GO:0009247: glycolipid biosynthetic process3.09E-03
93GO:0034052: positive regulation of plant-type hypersensitive response3.09E-03
94GO:0016120: carotene biosynthetic process3.09E-03
95GO:0032543: mitochondrial translation3.09E-03
96GO:0010236: plastoquinone biosynthetic process3.09E-03
97GO:0043097: pyrimidine nucleoside salvage3.09E-03
98GO:0031365: N-terminal protein amino acid modification3.09E-03
99GO:0016123: xanthophyll biosynthetic process3.09E-03
100GO:0016117: carotenoid biosynthetic process3.09E-03
101GO:0000413: protein peptidyl-prolyl isomerization3.34E-03
102GO:0006655: phosphatidylglycerol biosynthetic process3.82E-03
103GO:0010190: cytochrome b6f complex assembly3.82E-03
104GO:0006206: pyrimidine nucleobase metabolic process3.82E-03
105GO:0032973: amino acid export3.82E-03
106GO:0046855: inositol phosphate dephosphorylation3.82E-03
107GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.82E-03
108GO:0042372: phylloquinone biosynthetic process4.60E-03
109GO:0042026: protein refolding4.60E-03
110GO:0017148: negative regulation of translation4.60E-03
111GO:0010189: vitamin E biosynthetic process4.60E-03
112GO:0010019: chloroplast-nucleus signaling pathway4.60E-03
113GO:0010555: response to mannitol4.60E-03
114GO:0009955: adaxial/abaxial pattern specification4.60E-03
115GO:0071470: cellular response to osmotic stress4.60E-03
116GO:0006400: tRNA modification5.44E-03
117GO:0009395: phospholipid catabolic process5.44E-03
118GO:0043090: amino acid import5.44E-03
119GO:0009642: response to light intensity6.32E-03
120GO:0043068: positive regulation of programmed cell death6.32E-03
121GO:0019375: galactolipid biosynthetic process6.32E-03
122GO:0007186: G-protein coupled receptor signaling pathway7.25E-03
123GO:0009657: plastid organization7.25E-03
124GO:0017004: cytochrome complex assembly7.25E-03
125GO:0006002: fructose 6-phosphate metabolic process7.25E-03
126GO:0071482: cellular response to light stimulus7.25E-03
127GO:0022900: electron transport chain7.25E-03
128GO:0015996: chlorophyll catabolic process7.25E-03
129GO:0009245: lipid A biosynthetic process8.22E-03
130GO:0080144: amino acid homeostasis8.22E-03
131GO:0018298: protein-chromophore linkage8.42E-03
132GO:0009637: response to blue light1.07E-02
133GO:0034599: cellular response to oxidative stress1.12E-02
134GO:0009089: lysine biosynthetic process via diaminopimelate1.14E-02
135GO:0043085: positive regulation of catalytic activity1.14E-02
136GO:0006352: DNA-templated transcription, initiation1.14E-02
137GO:0006415: translational termination1.14E-02
138GO:0006457: protein folding1.16E-02
139GO:0016024: CDP-diacylglycerol biosynthetic process1.26E-02
140GO:0006790: sulfur compound metabolic process1.26E-02
141GO:0010628: positive regulation of gene expression1.38E-02
142GO:0006006: glucose metabolic process1.38E-02
143GO:0010114: response to red light1.38E-02
144GO:0009767: photosynthetic electron transport chain1.38E-02
145GO:0005986: sucrose biosynthetic process1.38E-02
146GO:0010020: chloroplast fission1.50E-02
147GO:0010167: response to nitrate1.62E-02
148GO:0019853: L-ascorbic acid biosynthetic process1.62E-02
149GO:0046854: phosphatidylinositol phosphorylation1.62E-02
150GO:0009793: embryo development ending in seed dormancy1.68E-02
151GO:0006636: unsaturated fatty acid biosynthetic process1.76E-02
152GO:0000027: ribosomal large subunit assembly1.89E-02
153GO:0019344: cysteine biosynthetic process1.89E-02
154GO:0009116: nucleoside metabolic process1.89E-02
155GO:0009768: photosynthesis, light harvesting in photosystem I2.03E-02
156GO:0016114: terpenoid biosynthetic process2.17E-02
157GO:0061077: chaperone-mediated protein folding2.17E-02
158GO:0006096: glycolytic process2.21E-02
159GO:0009814: defense response, incompatible interaction2.31E-02
160GO:0016226: iron-sulfur cluster assembly2.31E-02
161GO:0007005: mitochondrion organization2.31E-02
162GO:0055114: oxidation-reduction process2.45E-02
163GO:0009411: response to UV2.46E-02
164GO:0009306: protein secretion2.61E-02
165GO:0042335: cuticle development2.92E-02
166GO:0080022: primary root development2.92E-02
167GO:0008033: tRNA processing2.92E-02
168GO:0006508: proteolysis3.01E-02
169GO:0006662: glycerol ether metabolic process3.08E-02
170GO:0010182: sugar mediated signaling pathway3.08E-02
171GO:0009741: response to brassinosteroid3.08E-02
172GO:0015986: ATP synthesis coupled proton transport3.25E-02
173GO:0019252: starch biosynthetic process3.41E-02
174GO:1901657: glycosyl compound metabolic process3.93E-02
175GO:0006633: fatty acid biosynthetic process4.17E-02
176GO:0006413: translational initiation4.27E-02
177GO:0010286: heat acclimation4.29E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
3GO:0045550: geranylgeranyl reductase activity0.00E+00
4GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
5GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
11GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
12GO:0004418: hydroxymethylbilane synthase activity0.00E+00
13GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
14GO:0046408: chlorophyll synthetase activity0.00E+00
15GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
16GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
17GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
18GO:0019843: rRNA binding1.71E-17
19GO:0003735: structural constituent of ribosome1.19E-14
20GO:0016851: magnesium chelatase activity3.57E-10
21GO:0051920: peroxiredoxin activity2.38E-04
22GO:0004812: aminoacyl-tRNA ligase activity3.32E-04
23GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.55E-04
24GO:0015121: phosphoenolpyruvate:phosphate antiporter activity3.55E-04
25GO:0004831: tyrosine-tRNA ligase activity3.55E-04
26GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.55E-04
27GO:0004832: valine-tRNA ligase activity3.55E-04
28GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.55E-04
29GO:0004830: tryptophan-tRNA ligase activity3.55E-04
30GO:0010347: L-galactose-1-phosphate phosphatase activity3.55E-04
31GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.55E-04
32GO:0030794: (S)-coclaurine-N-methyltransferase activity3.55E-04
33GO:0004425: indole-3-glycerol-phosphate synthase activity3.55E-04
34GO:0004807: triose-phosphate isomerase activity3.55E-04
35GO:0016209: antioxidant activity3.89E-04
36GO:0003723: RNA binding3.90E-04
37GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.33E-04
38GO:0016630: protochlorophyllide reductase activity7.72E-04
39GO:0008934: inositol monophosphate 1-phosphatase activity7.72E-04
40GO:0052833: inositol monophosphate 4-phosphatase activity7.72E-04
41GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.72E-04
42GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.72E-04
43GO:0008883: glutamyl-tRNA reductase activity7.72E-04
44GO:0042389: omega-3 fatty acid desaturase activity7.72E-04
45GO:0009977: proton motive force dependent protein transmembrane transporter activity7.72E-04
46GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity7.72E-04
47GO:0052832: inositol monophosphate 3-phosphatase activity7.72E-04
48GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.72E-04
49GO:0008479: queuine tRNA-ribosyltransferase activity7.72E-04
50GO:0016168: chlorophyll binding9.14E-04
51GO:0004148: dihydrolipoyl dehydrogenase activity1.25E-03
52GO:0004751: ribose-5-phosphate isomerase activity1.25E-03
53GO:0070402: NADPH binding1.25E-03
54GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.25E-03
55GO:0008266: poly(U) RNA binding1.31E-03
56GO:0035250: UDP-galactosyltransferase activity1.80E-03
57GO:0016149: translation release factor activity, codon specific1.80E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.80E-03
59GO:0004550: nucleoside diphosphate kinase activity1.80E-03
60GO:0043023: ribosomal large subunit binding1.80E-03
61GO:0008097: 5S rRNA binding1.80E-03
62GO:0043424: protein histidine kinase binding2.00E-03
63GO:0003729: mRNA binding2.28E-03
64GO:0016987: sigma factor activity2.42E-03
65GO:0043495: protein anchor2.42E-03
66GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.42E-03
67GO:0015120: phosphoglycerate transmembrane transporter activity2.42E-03
68GO:0004659: prenyltransferase activity2.42E-03
69GO:0016279: protein-lysine N-methyltransferase activity2.42E-03
70GO:0001053: plastid sigma factor activity2.42E-03
71GO:0004845: uracil phosphoribosyltransferase activity2.42E-03
72GO:0051537: 2 iron, 2 sulfur cluster binding2.44E-03
73GO:0022891: substrate-specific transmembrane transporter activity2.63E-03
74GO:0003727: single-stranded RNA binding2.86E-03
75GO:0003959: NADPH dehydrogenase activity3.09E-03
76GO:0004040: amidase activity3.09E-03
77GO:0031177: phosphopantetheine binding3.82E-03
78GO:0042578: phosphoric ester hydrolase activity3.82E-03
79GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.60E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.60E-03
81GO:0004849: uridine kinase activity4.60E-03
82GO:0000035: acyl binding4.60E-03
83GO:0019899: enzyme binding5.44E-03
84GO:0016831: carboxy-lyase activity5.44E-03
85GO:0008235: metalloexopeptidase activity5.44E-03
86GO:0008237: metallopeptidase activity5.73E-03
87GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process6.32E-03
88GO:0004033: aldo-keto reductase (NADP) activity6.32E-03
89GO:0005509: calcium ion binding7.24E-03
90GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.25E-03
91GO:0008236: serine-type peptidase activity8.00E-03
92GO:0003747: translation release factor activity8.22E-03
93GO:0004222: metalloendopeptidase activity9.29E-03
94GO:0008047: enzyme activator activity1.03E-02
95GO:0004177: aminopeptidase activity1.14E-02
96GO:0044183: protein binding involved in protein folding1.14E-02
97GO:0009055: electron carrier activity1.16E-02
98GO:0051539: 4 iron, 4 sulfur cluster binding1.22E-02
99GO:0050661: NADP binding1.22E-02
100GO:0004089: carbonate dehydratase activity1.38E-02
101GO:0031072: heat shock protein binding1.38E-02
102GO:0031409: pigment binding1.76E-02
103GO:0004601: peroxidase activity1.78E-02
104GO:0005528: FK506 binding1.89E-02
105GO:0051536: iron-sulfur cluster binding1.89E-02
106GO:0003690: double-stranded DNA binding1.93E-02
107GO:0004176: ATP-dependent peptidase activity2.17E-02
108GO:0051082: unfolded protein binding2.66E-02
109GO:0015035: protein disulfide oxidoreductase activity2.74E-02
110GO:0047134: protein-disulfide reductase activity2.77E-02
111GO:0008080: N-acetyltransferase activity3.08E-02
112GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.08E-02
113GO:0010181: FMN binding3.25E-02
114GO:0004791: thioredoxin-disulfide reductase activity3.25E-02
115GO:0016491: oxidoreductase activity3.92E-02
116GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.93E-02
117GO:0008483: transaminase activity4.29E-02
118GO:0015297: antiporter activity4.37E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast4.29E-112
4GO:0009570: chloroplast stroma5.40E-64
5GO:0009941: chloroplast envelope7.53E-56
6GO:0009535: chloroplast thylakoid membrane7.01E-49
7GO:0009579: thylakoid2.52E-40
8GO:0009534: chloroplast thylakoid1.61E-21
9GO:0009543: chloroplast thylakoid lumen1.08E-20
10GO:0005840: ribosome9.69E-19
11GO:0031977: thylakoid lumen1.32E-15
12GO:0009654: photosystem II oxygen evolving complex5.59E-11
13GO:0031969: chloroplast membrane4.50E-08
14GO:0010007: magnesium chelatase complex4.77E-08
15GO:0019898: extrinsic component of membrane4.83E-08
16GO:0000311: plastid large ribosomal subunit1.77E-06
17GO:0009706: chloroplast inner membrane1.54E-05
18GO:0009536: plastid2.91E-05
19GO:0010319: stromule7.33E-05
20GO:0030095: chloroplast photosystem II9.60E-05
21GO:0042651: thylakoid membrane1.81E-04
22GO:0015934: large ribosomal subunit1.90E-04
23GO:0015935: small ribosomal subunit2.07E-04
24GO:0009533: chloroplast stromal thylakoid3.09E-04
25GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.55E-04
26GO:0009344: nitrite reductase complex [NAD(P)H]3.55E-04
27GO:0009547: plastid ribosome3.55E-04
28GO:0042170: plastid membrane7.72E-04
29GO:0009508: plastid chromosome1.17E-03
30GO:0048046: apoplast1.19E-03
31GO:0033281: TAT protein transport complex1.25E-03
32GO:0009528: plastid inner membrane1.25E-03
33GO:0009532: plastid stroma2.20E-03
34GO:0009526: plastid envelope2.42E-03
35GO:0009527: plastid outer membrane2.42E-03
36GO:0055035: plastid thylakoid membrane3.09E-03
37GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.82E-03
38GO:0009523: photosystem II4.16E-03
39GO:0009295: nucleoid5.73E-03
40GO:0010287: plastoglobule6.31E-03
41GO:0022626: cytosolic ribosome6.83E-03
42GO:0009539: photosystem II reaction center7.25E-03
43GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.22E-03
44GO:0005763: mitochondrial small ribosomal subunit8.22E-03
45GO:0009707: chloroplast outer membrane8.42E-03
46GO:0032040: small-subunit processome1.26E-02
47GO:0030076: light-harvesting complex1.62E-02
48GO:0043234: protein complex1.76E-02
49GO:0009522: photosystem I3.25E-02
50GO:0030529: intracellular ribonucleoprotein complex4.65E-02
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Gene type



Gene DE type