GO Enrichment Analysis of Co-expressed Genes with
AT1G50450
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 0.00E+00 |
| 2 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 6 | GO:0017038: protein import | 0.00E+00 |
| 7 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 8 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 9 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 10 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 11 | GO:0034337: RNA folding | 0.00E+00 |
| 12 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 13 | GO:0015979: photosynthesis | 9.61E-07 |
| 14 | GO:0009773: photosynthetic electron transport in photosystem I | 1.24E-06 |
| 15 | GO:0042254: ribosome biogenesis | 2.90E-06 |
| 16 | GO:0006412: translation | 4.33E-06 |
| 17 | GO:0034755: iron ion transmembrane transport | 5.59E-06 |
| 18 | GO:0015995: chlorophyll biosynthetic process | 8.07E-06 |
| 19 | GO:0032544: plastid translation | 1.69E-05 |
| 20 | GO:0010206: photosystem II repair | 2.33E-05 |
| 21 | GO:2001141: regulation of RNA biosynthetic process | 4.34E-05 |
| 22 | GO:0006546: glycine catabolic process | 7.72E-05 |
| 23 | GO:0010207: photosystem II assembly | 9.45E-05 |
| 24 | GO:0042549: photosystem II stabilization | 1.74E-04 |
| 25 | GO:0010019: chloroplast-nucleus signaling pathway | 2.36E-04 |
| 26 | GO:0010450: inflorescence meristem growth | 3.52E-04 |
| 27 | GO:0071588: hydrogen peroxide mediated signaling pathway | 3.52E-04 |
| 28 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.52E-04 |
| 29 | GO:0000476: maturation of 4.5S rRNA | 3.52E-04 |
| 30 | GO:0000967: rRNA 5'-end processing | 3.52E-04 |
| 31 | GO:0006824: cobalt ion transport | 3.52E-04 |
| 32 | GO:0043489: RNA stabilization | 3.52E-04 |
| 33 | GO:0000481: maturation of 5S rRNA | 3.52E-04 |
| 34 | GO:0042371: vitamin K biosynthetic process | 3.52E-04 |
| 35 | GO:0071461: cellular response to redox state | 3.52E-04 |
| 36 | GO:0071482: cellular response to light stimulus | 4.70E-04 |
| 37 | GO:0009735: response to cytokinin | 4.70E-04 |
| 38 | GO:0006810: transport | 7.26E-04 |
| 39 | GO:0034470: ncRNA processing | 7.67E-04 |
| 40 | GO:0080005: photosystem stoichiometry adjustment | 7.67E-04 |
| 41 | GO:0018026: peptidyl-lysine monomethylation | 7.67E-04 |
| 42 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 7.67E-04 |
| 43 | GO:0006352: DNA-templated transcription, initiation | 8.95E-04 |
| 44 | GO:0006000: fructose metabolic process | 1.24E-03 |
| 45 | GO:0006013: mannose metabolic process | 1.24E-03 |
| 46 | GO:0006954: inflammatory response | 1.24E-03 |
| 47 | GO:0006518: peptide metabolic process | 1.24E-03 |
| 48 | GO:0045165: cell fate commitment | 1.24E-03 |
| 49 | GO:0019253: reductive pentose-phosphate cycle | 1.30E-03 |
| 50 | GO:0009226: nucleotide-sugar biosynthetic process | 1.79E-03 |
| 51 | GO:0016556: mRNA modification | 1.79E-03 |
| 52 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.79E-03 |
| 53 | GO:0006418: tRNA aminoacylation for protein translation | 1.98E-03 |
| 54 | GO:0061077: chaperone-mediated protein folding | 2.18E-03 |
| 55 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.40E-03 |
| 56 | GO:0045727: positive regulation of translation | 2.40E-03 |
| 57 | GO:0015994: chlorophyll metabolic process | 2.40E-03 |
| 58 | GO:0006808: regulation of nitrogen utilization | 2.40E-03 |
| 59 | GO:0010109: regulation of photosynthesis | 2.40E-03 |
| 60 | GO:0009644: response to high light intensity | 2.41E-03 |
| 61 | GO:0032259: methylation | 2.45E-03 |
| 62 | GO:0010158: abaxial cell fate specification | 3.07E-03 |
| 63 | GO:0009247: glycolipid biosynthetic process | 3.07E-03 |
| 64 | GO:0032543: mitochondrial translation | 3.07E-03 |
| 65 | GO:0006564: L-serine biosynthetic process | 3.07E-03 |
| 66 | GO:0010236: plastoquinone biosynthetic process | 3.07E-03 |
| 67 | GO:0045038: protein import into chloroplast thylakoid membrane | 3.07E-03 |
| 68 | GO:1902183: regulation of shoot apical meristem development | 3.07E-03 |
| 69 | GO:0008152: metabolic process | 3.14E-03 |
| 70 | GO:0006364: rRNA processing | 3.19E-03 |
| 71 | GO:0000413: protein peptidyl-prolyl isomerization | 3.31E-03 |
| 72 | GO:0000470: maturation of LSU-rRNA | 3.79E-03 |
| 73 | GO:0016554: cytidine to uridine editing | 3.79E-03 |
| 74 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.79E-03 |
| 75 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 3.79E-03 |
| 76 | GO:0010190: cytochrome b6f complex assembly | 3.79E-03 |
| 77 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 3.79E-03 |
| 78 | GO:0010405: arabinogalactan protein metabolic process | 3.79E-03 |
| 79 | GO:0009658: chloroplast organization | 4.08E-03 |
| 80 | GO:0000302: response to reactive oxygen species | 4.40E-03 |
| 81 | GO:0042026: protein refolding | 4.57E-03 |
| 82 | GO:1901259: chloroplast rRNA processing | 4.57E-03 |
| 83 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.57E-03 |
| 84 | GO:0006458: 'de novo' protein folding | 4.57E-03 |
| 85 | GO:0010189: vitamin E biosynthetic process | 4.57E-03 |
| 86 | GO:0009395: phospholipid catabolic process | 5.40E-03 |
| 87 | GO:0009645: response to low light intensity stimulus | 5.40E-03 |
| 88 | GO:0030091: protein repair | 6.27E-03 |
| 89 | GO:0009850: auxin metabolic process | 6.27E-03 |
| 90 | GO:0006605: protein targeting | 6.27E-03 |
| 91 | GO:0019375: galactolipid biosynthetic process | 6.27E-03 |
| 92 | GO:0032508: DNA duplex unwinding | 6.27E-03 |
| 93 | GO:0010027: thylakoid membrane organization | 6.37E-03 |
| 94 | GO:0055114: oxidation-reduction process | 6.97E-03 |
| 95 | GO:0006002: fructose 6-phosphate metabolic process | 7.19E-03 |
| 96 | GO:0017004: cytochrome complex assembly | 7.19E-03 |
| 97 | GO:0010093: specification of floral organ identity | 7.19E-03 |
| 98 | GO:0042744: hydrogen peroxide catabolic process | 7.86E-03 |
| 99 | GO:0009051: pentose-phosphate shunt, oxidative branch | 8.16E-03 |
| 100 | GO:0009821: alkaloid biosynthetic process | 8.16E-03 |
| 101 | GO:2000024: regulation of leaf development | 8.16E-03 |
| 102 | GO:0000373: Group II intron splicing | 8.16E-03 |
| 103 | GO:0018298: protein-chromophore linkage | 8.33E-03 |
| 104 | GO:0010205: photoinhibition | 9.17E-03 |
| 105 | GO:1900865: chloroplast RNA modification | 9.17E-03 |
| 106 | GO:0042761: very long-chain fatty acid biosynthetic process | 9.17E-03 |
| 107 | GO:0009631: cold acclimation | 9.64E-03 |
| 108 | GO:0009451: RNA modification | 1.04E-02 |
| 109 | GO:0034599: cellular response to oxidative stress | 1.11E-02 |
| 110 | GO:0019684: photosynthesis, light reaction | 1.13E-02 |
| 111 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.13E-02 |
| 112 | GO:0009073: aromatic amino acid family biosynthetic process | 1.13E-02 |
| 113 | GO:0043085: positive regulation of catalytic activity | 1.13E-02 |
| 114 | GO:0006879: cellular iron ion homeostasis | 1.13E-02 |
| 115 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.13E-02 |
| 116 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.25E-02 |
| 117 | GO:0005986: sucrose biosynthetic process | 1.37E-02 |
| 118 | GO:0030048: actin filament-based movement | 1.37E-02 |
| 119 | GO:0010628: positive regulation of gene expression | 1.37E-02 |
| 120 | GO:0006006: glucose metabolic process | 1.37E-02 |
| 121 | GO:0006094: gluconeogenesis | 1.37E-02 |
| 122 | GO:0009767: photosynthetic electron transport chain | 1.37E-02 |
| 123 | GO:0009933: meristem structural organization | 1.49E-02 |
| 124 | GO:0006855: drug transmembrane transport | 1.60E-02 |
| 125 | GO:0010025: wax biosynthetic process | 1.74E-02 |
| 126 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.74E-02 |
| 127 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.88E-02 |
| 128 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.01E-02 |
| 129 | GO:0006096: glycolytic process | 2.18E-02 |
| 130 | GO:0016226: iron-sulfur cluster assembly | 2.29E-02 |
| 131 | GO:0009561: megagametogenesis | 2.59E-02 |
| 132 | GO:0010154: fruit development | 3.06E-02 |
| 133 | GO:0006814: sodium ion transport | 3.22E-02 |
| 134 | GO:0009646: response to absence of light | 3.22E-02 |
| 135 | GO:0019252: starch biosynthetic process | 3.39E-02 |
| 136 | GO:0006457: protein folding | 3.53E-02 |
| 137 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 3.55E-02 |
| 138 | GO:0002229: defense response to oomycetes | 3.55E-02 |
| 139 | GO:0009790: embryo development | 3.84E-02 |
| 140 | GO:0030163: protein catabolic process | 3.90E-02 |
| 141 | GO:0010090: trichome morphogenesis | 3.90E-02 |
| 142 | GO:0009409: response to cold | 4.03E-02 |
| 143 | GO:0042128: nitrate assimilation | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 3 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 4 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 6 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 7 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 8 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 9 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 10 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 11 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 12 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 13 | GO:0019843: rRNA binding | 1.57E-17 |
| 14 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.32E-09 |
| 15 | GO:0003735: structural constituent of ribosome | 4.29E-08 |
| 16 | GO:0005528: FK506 binding | 1.53E-07 |
| 17 | GO:0016851: magnesium chelatase activity | 2.26E-07 |
| 18 | GO:0002161: aminoacyl-tRNA editing activity | 1.97E-05 |
| 19 | GO:0016987: sigma factor activity | 7.72E-05 |
| 20 | GO:0001053: plastid sigma factor activity | 7.72E-05 |
| 21 | GO:0008266: poly(U) RNA binding | 9.45E-05 |
| 22 | GO:0004130: cytochrome-c peroxidase activity | 1.74E-04 |
| 23 | GO:0042578: phosphoric ester hydrolase activity | 1.74E-04 |
| 24 | GO:0046906: tetrapyrrole binding | 3.52E-04 |
| 25 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 3.52E-04 |
| 26 | GO:0045485: omega-6 fatty acid desaturase activity | 3.52E-04 |
| 27 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.52E-04 |
| 28 | GO:0004328: formamidase activity | 3.52E-04 |
| 29 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 3.52E-04 |
| 30 | GO:0005381: iron ion transmembrane transporter activity | 6.66E-04 |
| 31 | GO:0004047: aminomethyltransferase activity | 7.67E-04 |
| 32 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 7.67E-04 |
| 33 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 7.67E-04 |
| 34 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 7.67E-04 |
| 35 | GO:0047746: chlorophyllase activity | 7.67E-04 |
| 36 | GO:0004618: phosphoglycerate kinase activity | 7.67E-04 |
| 37 | GO:0004617: phosphoglycerate dehydrogenase activity | 7.67E-04 |
| 38 | GO:0016788: hydrolase activity, acting on ester bonds | 9.46E-04 |
| 39 | GO:0008236: serine-type peptidase activity | 1.10E-03 |
| 40 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 1.24E-03 |
| 41 | GO:0017150: tRNA dihydrouridine synthase activity | 1.24E-03 |
| 42 | GO:0030267: glyoxylate reductase (NADP) activity | 1.24E-03 |
| 43 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.79E-03 |
| 44 | GO:0035250: UDP-galactosyltransferase activity | 1.79E-03 |
| 45 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.79E-03 |
| 46 | GO:0008097: 5S rRNA binding | 1.79E-03 |
| 47 | GO:0008508: bile acid:sodium symporter activity | 1.79E-03 |
| 48 | GO:0016787: hydrolase activity | 1.92E-03 |
| 49 | GO:0003723: RNA binding | 2.08E-03 |
| 50 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.40E-03 |
| 51 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 2.40E-03 |
| 52 | GO:0016279: protein-lysine N-methyltransferase activity | 2.40E-03 |
| 53 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.40E-03 |
| 54 | GO:0004812: aminoacyl-tRNA ligase activity | 3.06E-03 |
| 55 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 3.79E-03 |
| 56 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.79E-03 |
| 57 | GO:0016688: L-ascorbate peroxidase activity | 3.79E-03 |
| 58 | GO:0008168: methyltransferase activity | 3.85E-03 |
| 59 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 4.57E-03 |
| 60 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 4.57E-03 |
| 61 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 4.57E-03 |
| 62 | GO:0004559: alpha-mannosidase activity | 4.57E-03 |
| 63 | GO:0051920: peroxiredoxin activity | 4.57E-03 |
| 64 | GO:0019899: enzyme binding | 5.40E-03 |
| 65 | GO:0004033: aldo-keto reductase (NADP) activity | 6.27E-03 |
| 66 | GO:0043022: ribosome binding | 6.27E-03 |
| 67 | GO:0016209: antioxidant activity | 6.27E-03 |
| 68 | GO:0016168: chlorophyll binding | 6.74E-03 |
| 69 | GO:0004252: serine-type endopeptidase activity | 7.61E-03 |
| 70 | GO:0015238: drug transmembrane transporter activity | 8.75E-03 |
| 71 | GO:0016844: strictosidine synthase activity | 9.17E-03 |
| 72 | GO:0004222: metalloendopeptidase activity | 9.19E-03 |
| 73 | GO:0044183: protein binding involved in protein folding | 1.13E-02 |
| 74 | GO:0004519: endonuclease activity | 1.16E-02 |
| 75 | GO:0000049: tRNA binding | 1.25E-02 |
| 76 | GO:0046872: metal ion binding | 1.36E-02 |
| 77 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.37E-02 |
| 78 | GO:0031072: heat shock protein binding | 1.37E-02 |
| 79 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.48E-02 |
| 80 | GO:0008131: primary amine oxidase activity | 1.49E-02 |
| 81 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.49E-02 |
| 82 | GO:0003774: motor activity | 1.49E-02 |
| 83 | GO:0031409: pigment binding | 1.74E-02 |
| 84 | GO:0004601: peroxidase activity | 1.75E-02 |
| 85 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.85E-02 |
| 86 | GO:0051536: iron-sulfur cluster binding | 1.88E-02 |
| 87 | GO:0043424: protein histidine kinase binding | 2.01E-02 |
| 88 | GO:0022891: substrate-specific transmembrane transporter activity | 2.44E-02 |
| 89 | GO:0051082: unfolded protein binding | 2.63E-02 |
| 90 | GO:0003824: catalytic activity | 2.85E-02 |
| 91 | GO:0005215: transporter activity | 2.88E-02 |
| 92 | GO:0016758: transferase activity, transferring hexosyl groups | 3.21E-02 |
| 93 | GO:0050662: coenzyme binding | 3.22E-02 |
| 94 | GO:0048038: quinone binding | 3.55E-02 |
| 95 | GO:0009055: electron carrier activity | 4.07E-02 |
| 96 | GO:0008483: transaminase activity | 4.25E-02 |
| 97 | GO:0015297: antiporter activity | 4.33E-02 |
| 98 | GO:0016597: amino acid binding | 4.43E-02 |
| 99 | GO:0003729: mRNA binding | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000408: EKC/KEOPS complex | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009571: proplastid stroma | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 4.46E-87 |
| 5 | GO:0009570: chloroplast stroma | 2.64E-45 |
| 6 | GO:0009941: chloroplast envelope | 1.75E-37 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.59E-36 |
| 8 | GO:0009534: chloroplast thylakoid | 2.77E-31 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 2.20E-22 |
| 10 | GO:0009579: thylakoid | 8.99E-18 |
| 11 | GO:0031977: thylakoid lumen | 8.49E-11 |
| 12 | GO:0005840: ribosome | 4.91E-10 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.93E-09 |
| 14 | GO:0010007: magnesium chelatase complex | 4.67E-08 |
| 15 | GO:0009533: chloroplast stromal thylakoid | 7.84E-06 |
| 16 | GO:0009706: chloroplast inner membrane | 1.50E-05 |
| 17 | GO:0009782: photosystem I antenna complex | 3.52E-04 |
| 18 | GO:0009344: nitrite reductase complex [NAD(P)H] | 3.52E-04 |
| 19 | GO:0009547: plastid ribosome | 3.52E-04 |
| 20 | GO:0080085: signal recognition particle, chloroplast targeting | 7.67E-04 |
| 21 | GO:0032040: small-subunit processome | 1.02E-03 |
| 22 | GO:0000311: plastid large ribosomal subunit | 1.02E-03 |
| 23 | GO:0010287: plastoglobule | 1.18E-03 |
| 24 | GO:0000312: plastid small ribosomal subunit | 1.30E-03 |
| 25 | GO:0015934: large ribosomal subunit | 1.40E-03 |
| 26 | GO:0016020: membrane | 1.77E-03 |
| 27 | GO:0005960: glycine cleavage complex | 1.79E-03 |
| 28 | GO:0009654: photosystem II oxygen evolving complex | 1.98E-03 |
| 29 | GO:0009523: photosystem II | 4.11E-03 |
| 30 | GO:0019898: extrinsic component of membrane | 4.11E-03 |
| 31 | GO:0031969: chloroplast membrane | 5.66E-03 |
| 32 | GO:0009295: nucleoid | 5.67E-03 |
| 33 | GO:0030529: intracellular ribonucleoprotein complex | 6.37E-03 |
| 34 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 7.19E-03 |
| 35 | GO:0016459: myosin complex | 1.02E-02 |
| 36 | GO:0043231: intracellular membrane-bounded organelle | 1.19E-02 |
| 37 | GO:0009536: plastid | 1.23E-02 |
| 38 | GO:0009508: plastid chromosome | 1.37E-02 |
| 39 | GO:0030095: chloroplast photosystem II | 1.49E-02 |
| 40 | GO:0030076: light-harvesting complex | 1.61E-02 |
| 41 | GO:0009532: plastid stroma | 2.15E-02 |
| 42 | GO:0022626: cytosolic ribosome | 2.27E-02 |
| 43 | GO:0022625: cytosolic large ribosomal subunit | 2.45E-02 |
| 44 | GO:0009522: photosystem I | 3.22E-02 |
| 45 | GO:0048046: apoplast | 4.12E-02 |
| 46 | GO:0010319: stromule | 4.25E-02 |