Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G49975

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0034337: RNA folding0.00E+00
2GO:0010275: NAD(P)H dehydrogenase complex assembly0.00E+00
3GO:0090706: specification of plant organ position0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:2000121: regulation of removal of superoxide radicals0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0016553: base conversion or substitution editing0.00E+00
9GO:0005996: monosaccharide metabolic process0.00E+00
10GO:0046471: phosphatidylglycerol metabolic process0.00E+00
11GO:0018023: peptidyl-lysine trimethylation0.00E+00
12GO:0006399: tRNA metabolic process0.00E+00
13GO:0006412: translation5.62E-14
14GO:0015979: photosynthesis6.59E-12
15GO:0042254: ribosome biogenesis1.02E-11
16GO:0032544: plastid translation1.23E-08
17GO:0015995: chlorophyll biosynthetic process2.35E-06
18GO:0009773: photosynthetic electron transport in photosystem I4.98E-06
19GO:0010207: photosystem II assembly1.20E-05
20GO:0006636: unsaturated fatty acid biosynthetic process1.95E-05
21GO:0009735: response to cytokinin3.43E-05
22GO:0006518: peptide metabolic process4.25E-05
23GO:0010206: photosystem II repair6.32E-05
24GO:2001141: regulation of RNA biosynthetic process9.04E-05
25GO:0009409: response to cold1.30E-04
26GO:0045727: positive regulation of translation1.56E-04
27GO:0006546: glycine catabolic process1.56E-04
28GO:0019253: reductive pentose-phosphate cycle2.33E-04
29GO:0010027: thylakoid membrane organization2.69E-04
30GO:0042549: photosystem II stabilization3.35E-04
31GO:0018298: protein-chromophore linkage4.15E-04
32GO:0010019: chloroplast-nucleus signaling pathway4.47E-04
33GO:0061077: chaperone-mediated protein folding4.73E-04
34GO:0006810: transport5.32E-04
35GO:0010450: inflorescence meristem growth5.37E-04
36GO:0071588: hydrogen peroxide mediated signaling pathway5.37E-04
37GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.37E-04
38GO:0000476: maturation of 4.5S rRNA5.37E-04
39GO:0000967: rRNA 5'-end processing5.37E-04
40GO:0043489: RNA stabilization5.37E-04
41GO:1904966: positive regulation of vitamin E biosynthetic process5.37E-04
42GO:0071370: cellular response to gibberellin stimulus5.37E-04
43GO:0000481: maturation of 5S rRNA5.37E-04
44GO:1904964: positive regulation of phytol biosynthetic process5.37E-04
45GO:0042371: vitamin K biosynthetic process5.37E-04
46GO:1902458: positive regulation of stomatal opening5.37E-04
47GO:0009658: chloroplast organization7.09E-04
48GO:0071482: cellular response to light stimulus8.68E-04
49GO:0009657: plastid organization8.68E-04
50GO:1903426: regulation of reactive oxygen species biosynthetic process1.16E-03
51GO:0030388: fructose 1,6-bisphosphate metabolic process1.16E-03
52GO:0034470: ncRNA processing1.16E-03
53GO:1902326: positive regulation of chlorophyll biosynthetic process1.16E-03
54GO:1900871: chloroplast mRNA modification1.16E-03
55GO:0034755: iron ion transmembrane transport1.16E-03
56GO:0018026: peptidyl-lysine monomethylation1.16E-03
57GO:0010205: photoinhibition1.22E-03
58GO:0019684: photosynthesis, light reaction1.65E-03
59GO:0006352: DNA-templated transcription, initiation1.65E-03
60GO:0018119: peptidyl-cysteine S-nitrosylation1.65E-03
61GO:0006011: UDP-glucose metabolic process1.90E-03
62GO:0006000: fructose metabolic process1.90E-03
63GO:0006954: inflammatory response1.90E-03
64GO:0006013: mannose metabolic process1.90E-03
65GO:0005977: glycogen metabolic process1.90E-03
66GO:0045165: cell fate commitment1.90E-03
67GO:0009793: embryo development ending in seed dormancy2.05E-03
68GO:0009767: photosynthetic electron transport chain2.15E-03
69GO:0006006: glucose metabolic process2.15E-03
70GO:1902476: chloride transmembrane transport2.75E-03
71GO:0051513: regulation of monopolar cell growth2.75E-03
72GO:0009152: purine ribonucleotide biosynthetic process2.75E-03
73GO:0046653: tetrahydrofolate metabolic process2.75E-03
74GO:0009800: cinnamic acid biosynthetic process2.75E-03
75GO:0016556: mRNA modification2.75E-03
76GO:0015976: carbon utilization3.71E-03
77GO:0019464: glycine decarboxylation via glycine cleavage system3.71E-03
78GO:0015994: chlorophyll metabolic process3.71E-03
79GO:2000122: negative regulation of stomatal complex development3.71E-03
80GO:0010037: response to carbon dioxide3.71E-03
81GO:0009768: photosynthesis, light harvesting in photosystem I3.72E-03
82GO:1902183: regulation of shoot apical meristem development4.75E-03
83GO:0010158: abaxial cell fate specification4.75E-03
84GO:0009247: glycolipid biosynthetic process4.75E-03
85GO:0034052: positive regulation of plant-type hypersensitive response4.75E-03
86GO:0032543: mitochondrial translation4.75E-03
87GO:0006564: L-serine biosynthetic process4.75E-03
88GO:0045038: protein import into chloroplast thylakoid membrane4.75E-03
89GO:0031365: N-terminal protein amino acid modification4.75E-03
90GO:0010114: response to red light4.90E-03
91GO:0009306: protein secretion5.32E-03
92GO:0007623: circadian rhythm5.54E-03
93GO:0006655: phosphatidylglycerol biosynthetic process5.89E-03
94GO:0010190: cytochrome b6f complex assembly5.89E-03
95GO:0006559: L-phenylalanine catabolic process5.89E-03
96GO:0032973: amino acid export5.89E-03
97GO:0000741: karyogamy5.89E-03
98GO:0010942: positive regulation of cell death5.89E-03
99GO:0000413: protein peptidyl-prolyl isomerization6.24E-03
100GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity7.11E-03
101GO:0042026: protein refolding7.11E-03
102GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.11E-03
103GO:0006458: 'de novo' protein folding7.11E-03
104GO:1901259: chloroplast rRNA processing7.11E-03
105GO:0006364: rRNA processing7.19E-03
106GO:0000302: response to reactive oxygen species8.34E-03
107GO:0009610: response to symbiotic fungus8.42E-03
108GO:0009772: photosynthetic electron transport in photosystem II8.42E-03
109GO:0043090: amino acid import8.42E-03
110GO:0006821: chloride transport8.42E-03
111GO:0009645: response to low light intensity stimulus8.42E-03
112GO:0050829: defense response to Gram-negative bacterium8.42E-03
113GO:0055114: oxidation-reduction process9.32E-03
114GO:0052543: callose deposition in cell wall9.81E-03
115GO:0048564: photosystem I assembly9.81E-03
116GO:0009850: auxin metabolic process9.81E-03
117GO:0043068: positive regulation of programmed cell death9.81E-03
118GO:0042255: ribosome assembly9.81E-03
119GO:0006605: protein targeting9.81E-03
120GO:0019375: galactolipid biosynthetic process9.81E-03
121GO:0032508: DNA duplex unwinding9.81E-03
122GO:2000070: regulation of response to water deprivation9.81E-03
123GO:0010492: maintenance of shoot apical meristem identity9.81E-03
124GO:0010093: specification of floral organ identity1.13E-02
125GO:0009699: phenylpropanoid biosynthetic process1.13E-02
126GO:0006002: fructose 6-phosphate metabolic process1.13E-02
127GO:0017004: cytochrome complex assembly1.13E-02
128GO:0009051: pentose-phosphate shunt, oxidative branch1.28E-02
129GO:0009821: alkaloid biosynthetic process1.28E-02
130GO:0080144: amino acid homeostasis1.28E-02
131GO:2000024: regulation of leaf development1.28E-02
132GO:0048507: meristem development1.28E-02
133GO:0042128: nitrate assimilation1.35E-02
134GO:0009870: defense response signaling pathway, resistance gene-dependent1.61E-02
135GO:0042744: hydrogen peroxide catabolic process1.77E-02
136GO:0009698: phenylpropanoid metabolic process1.79E-02
137GO:0009089: lysine biosynthetic process via diaminopimelate1.79E-02
138GO:0009073: aromatic amino acid family biosynthetic process1.79E-02
139GO:0043085: positive regulation of catalytic activity1.79E-02
140GO:0006879: cellular iron ion homeostasis1.79E-02
141GO:0000272: polysaccharide catabolic process1.79E-02
142GO:0009790: embryo development1.83E-02
143GO:0009631: cold acclimation1.84E-02
144GO:0015706: nitrate transport1.97E-02
145GO:0016024: CDP-diacylglycerol biosynthetic process1.97E-02
146GO:0009637: response to blue light2.01E-02
147GO:0034599: cellular response to oxidative stress2.11E-02
148GO:0006094: gluconeogenesis2.15E-02
149GO:0005986: sucrose biosynthetic process2.15E-02
150GO:0010628: positive regulation of gene expression2.15E-02
151GO:0030001: metal ion transport2.30E-02
152GO:0009933: meristem structural organization2.35E-02
153GO:0032259: methylation2.51E-02
154GO:0010167: response to nitrate2.55E-02
155GO:0005985: sucrose metabolic process2.55E-02
156GO:0009644: response to high light intensity2.81E-02
157GO:0009944: polarity specification of adaxial/abaxial axis2.96E-02
158GO:0000027: ribosomal large subunit assembly2.96E-02
159GO:0008152: metabolic process3.08E-02
160GO:0006418: tRNA aminoacylation for protein translation3.18E-02
161GO:0006457: protein folding3.37E-02
162GO:0019915: lipid storage3.40E-02
163GO:0031408: oxylipin biosynthetic process3.40E-02
164GO:0009814: defense response, incompatible interaction3.63E-02
165GO:0016226: iron-sulfur cluster assembly3.63E-02
166GO:0030433: ubiquitin-dependent ERAD pathway3.63E-02
167GO:0006284: base-excision repair4.09E-02
168GO:0009561: megagametogenesis4.09E-02
169GO:0006096: glycolytic process4.14E-02
170GO:0042631: cellular response to water deprivation4.58E-02
171GO:0080022: primary root development4.58E-02
172GO:0042545: cell wall modification4.82E-02
173GO:0010154: fruit development4.83E-02
174GO:0010197: polar nucleus fusion4.83E-02
RankGO TermAdjusted P value
1GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
4GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
5GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
10GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
11GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0019843: rRNA binding6.26E-28
14GO:0003735: structural constituent of ribosome1.60E-18
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.57E-09
16GO:0005528: FK506 binding1.98E-08
17GO:0016851: magnesium chelatase activity7.12E-07
18GO:0016987: sigma factor activity1.56E-04
19GO:0001053: plastid sigma factor activity1.56E-04
20GO:0008266: poly(U) RNA binding2.33E-04
21GO:0016168: chlorophyll binding2.95E-04
22GO:0004130: cytochrome-c peroxidase activity3.35E-04
23GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.47E-04
24GO:0046906: tetrapyrrole binding5.37E-04
25GO:0052638: indole-3-butyrate beta-glucosyltransferase activity5.37E-04
26GO:0009671: nitrate:proton symporter activity5.37E-04
27GO:0045485: omega-6 fatty acid desaturase activity5.37E-04
28GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.37E-04
29GO:0004328: formamidase activity5.37E-04
30GO:0019899: enzyme binding5.72E-04
31GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.68E-04
32GO:0051537: 2 iron, 2 sulfur cluster binding9.99E-04
33GO:0009977: proton motive force dependent protein transmembrane transporter activity1.16E-03
34GO:0004617: phosphoglycerate dehydrogenase activity1.16E-03
35GO:0004047: aminomethyltransferase activity1.16E-03
36GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.16E-03
37GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.16E-03
38GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.16E-03
39GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.16E-03
40GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.16E-03
41GO:0047746: chlorophyllase activity1.16E-03
42GO:0042389: omega-3 fatty acid desaturase activity1.16E-03
43GO:0004618: phosphoglycerate kinase activity1.16E-03
44GO:0010297: heteropolysaccharide binding1.16E-03
45GO:0010277: chlorophyllide a oxygenase [overall] activity1.90E-03
46GO:0045548: phenylalanine ammonia-lyase activity1.90E-03
47GO:0002161: aminoacyl-tRNA editing activity1.90E-03
48GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.90E-03
49GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.90E-03
50GO:0008864: formyltetrahydrofolate deformylase activity1.90E-03
51GO:0031072: heat shock protein binding2.15E-03
52GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.75E-03
53GO:0008508: bile acid:sodium symporter activity2.75E-03
54GO:0004375: glycine dehydrogenase (decarboxylating) activity2.75E-03
55GO:0035250: UDP-galactosyltransferase activity2.75E-03
56GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.75E-03
57GO:0008097: 5S rRNA binding2.75E-03
58GO:0004222: metalloendopeptidase activity2.96E-03
59GO:0031409: pigment binding3.04E-03
60GO:0005509: calcium ion binding3.29E-03
61GO:0004345: glucose-6-phosphate dehydrogenase activity3.71E-03
62GO:0043495: protein anchor3.71E-03
63GO:0005253: anion channel activity3.71E-03
64GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.71E-03
65GO:0016279: protein-lysine N-methyltransferase activity3.71E-03
66GO:0008725: DNA-3-methyladenine glycosylase activity4.75E-03
67GO:0022891: substrate-specific transmembrane transporter activity4.89E-03
68GO:0003727: single-stranded RNA binding5.32E-03
69GO:0042578: phosphoric ester hydrolase activity5.89E-03
70GO:0016688: L-ascorbate peroxidase activity5.89E-03
71GO:0005247: voltage-gated chloride channel activity5.89E-03
72GO:0051920: peroxiredoxin activity7.11E-03
73GO:0004559: alpha-mannosidase activity7.11E-03
74GO:0050662: coenzyme binding7.25E-03
75GO:0003723: RNA binding8.09E-03
76GO:0008235: metalloexopeptidase activity8.42E-03
77GO:0009055: electron carrier activity9.18E-03
78GO:0004564: beta-fructofuranosidase activity9.81E-03
79GO:0016209: antioxidant activity9.81E-03
80GO:0004033: aldo-keto reductase (NADP) activity9.81E-03
81GO:0051082: unfolded protein binding1.13E-02
82GO:0004575: sucrose alpha-glucosidase activity1.44E-02
83GO:0005381: iron ion transmembrane transporter activity1.44E-02
84GO:0016844: strictosidine synthase activity1.44E-02
85GO:0015112: nitrate transmembrane transporter activity1.44E-02
86GO:0008236: serine-type peptidase activity1.51E-02
87GO:0044183: protein binding involved in protein folding1.79E-02
88GO:0004177: aminopeptidase activity1.79E-02
89GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.84E-02
90GO:0000049: tRNA binding1.97E-02
91GO:0004022: alcohol dehydrogenase (NAD) activity2.15E-02
92GO:0004089: carbonate dehydratase activity2.15E-02
93GO:0050661: NADP binding2.30E-02
94GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.35E-02
95GO:0008146: sulfotransferase activity2.55E-02
96GO:0004185: serine-type carboxypeptidase activity2.60E-02
97GO:0051536: iron-sulfur cluster binding2.96E-02
98GO:0051287: NAD binding3.15E-02
99GO:0043424: protein histidine kinase binding3.18E-02
100GO:0003824: catalytic activity3.36E-02
101GO:0004176: ATP-dependent peptidase activity3.40E-02
102GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.50E-02
103GO:0003690: double-stranded DNA binding3.63E-02
104GO:0008168: methyltransferase activity3.72E-02
105GO:0045330: aspartyl esterase activity3.88E-02
106GO:0004601: peroxidase activity3.90E-02
107GO:0003756: protein disulfide isomerase activity4.09E-02
108GO:0004812: aminoacyl-tRNA ligase activity4.33E-02
109GO:0030599: pectinesterase activity4.68E-02
110GO:0016491: oxidoreductase activity4.68E-02
111GO:0008080: N-acetyltransferase activity4.83E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
5GO:0009507: chloroplast1.81E-98
6GO:0009941: chloroplast envelope1.25E-49
7GO:0009535: chloroplast thylakoid membrane2.10E-48
8GO:0009570: chloroplast stroma1.49E-46
9GO:0009543: chloroplast thylakoid lumen7.94E-35
10GO:0009534: chloroplast thylakoid7.80E-34
11GO:0009579: thylakoid8.27E-30
12GO:0005840: ribosome7.94E-18
13GO:0031977: thylakoid lumen3.65E-17
14GO:0009654: photosystem II oxygen evolving complex9.01E-12
15GO:0019898: extrinsic component of membrane2.80E-10
16GO:0030095: chloroplast photosystem II6.09E-09
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.25E-08
18GO:0010007: magnesium chelatase complex1.49E-07
19GO:0009706: chloroplast inner membrane6.89E-07
20GO:0000311: plastid large ribosomal subunit6.82E-06
21GO:0000312: plastid small ribosomal subunit1.20E-05
22GO:0009533: chloroplast stromal thylakoid2.26E-05
23GO:0031969: chloroplast membrane5.17E-05
24GO:0010287: plastoglobule1.21E-04
25GO:0009523: photosystem II1.25E-04
26GO:0015935: small ribosomal subunit4.73E-04
27GO:0015934: large ribosomal subunit5.22E-04
28GO:0009782: photosystem I antenna complex5.37E-04
29GO:0009547: plastid ribosome5.37E-04
30GO:0000427: plastid-encoded plastid RNA polymerase complex1.16E-03
31GO:0042170: plastid membrane1.16E-03
32GO:0010319: stromule1.60E-03
33GO:0016020: membrane1.67E-03
34GO:0032040: small-subunit processome1.89E-03
35GO:0033281: TAT protein transport complex1.90E-03
36GO:0030076: light-harvesting complex2.72E-03
37GO:0005775: vacuolar lumen2.75E-03
38GO:0042646: plastid nucleoid2.75E-03
39GO:0005960: glycine cleavage complex2.75E-03
40GO:0042651: thylakoid membrane3.72E-03
41GO:0034707: chloride channel complex5.89E-03
42GO:0016363: nuclear matrix7.11E-03
43GO:0009295: nucleoid1.08E-02
44GO:0005763: mitochondrial small ribosomal subunit1.28E-02
45GO:0009536: plastid1.67E-02
46GO:0022626: cytosolic ribosome2.03E-02
47GO:0019013: viral nucleocapsid2.15E-02
48GO:0022627: cytosolic small ribosomal subunit3.21E-02
49GO:0048046: apoplast3.53E-02
50GO:0009505: plant-type cell wall4.28E-02
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Gene type



Gene DE type