Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G49650

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000121: regulation of removal of superoxide radicals0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0006573: valine metabolic process0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
9GO:0002184: cytoplasmic translational termination0.00E+00
10GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
11GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
12GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
13GO:0006412: translation2.73E-16
14GO:0015995: chlorophyll biosynthetic process4.08E-13
15GO:0042254: ribosome biogenesis3.77E-11
16GO:0032544: plastid translation3.93E-10
17GO:0009658: chloroplast organization7.52E-10
18GO:0015979: photosynthesis6.89E-08
19GO:0009735: response to cytokinin1.45E-07
20GO:0006782: protoporphyrinogen IX biosynthetic process2.20E-07
21GO:0042255: ribosome assembly4.15E-06
22GO:0006353: DNA-templated transcription, termination4.15E-06
23GO:0042742: defense response to bacterium5.19E-06
24GO:0006783: heme biosynthetic process8.44E-06
25GO:0032502: developmental process1.50E-05
26GO:0010236: plastoquinone biosynthetic process6.05E-05
27GO:0045038: protein import into chloroplast thylakoid membrane6.05E-05
28GO:0009790: embryo development8.95E-05
29GO:1901259: chloroplast rRNA processing1.23E-04
30GO:0009772: photosynthetic electron transport in photosystem II1.62E-04
31GO:0048564: photosystem I assembly2.06E-04
32GO:0009443: pyridoxal 5'-phosphate salvage2.32E-04
33GO:0043489: RNA stabilization2.32E-04
34GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process2.32E-04
35GO:1904966: positive regulation of vitamin E biosynthetic process2.32E-04
36GO:1904964: positive regulation of phytol biosynthetic process2.32E-04
37GO:0006551: leucine metabolic process2.32E-04
38GO:0042371: vitamin K biosynthetic process2.32E-04
39GO:1902458: positive regulation of stomatal opening2.32E-04
40GO:0034337: RNA folding2.32E-04
41GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.32E-04
42GO:0006434: seryl-tRNA aminoacylation2.32E-04
43GO:0006779: porphyrin-containing compound biosynthetic process3.67E-04
44GO:0010027: thylakoid membrane organization3.89E-04
45GO:0009409: response to cold3.94E-04
46GO:0009773: photosynthetic electron transport in photosystem I4.97E-04
47GO:0019684: photosynthesis, light reaction4.97E-04
48GO:1902326: positive regulation of chlorophyll biosynthetic process5.15E-04
49GO:0019388: galactose catabolic process5.15E-04
50GO:0008616: queuosine biosynthetic process5.15E-04
51GO:0006729: tetrahydrobiopterin biosynthetic process5.15E-04
52GO:1903426: regulation of reactive oxygen species biosynthetic process5.15E-04
53GO:0010275: NAD(P)H dehydrogenase complex assembly5.15E-04
54GO:0043039: tRNA aminoacylation5.15E-04
55GO:0045454: cell redox homeostasis6.22E-04
56GO:0006006: glucose metabolic process6.45E-04
57GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition8.37E-04
58GO:0006518: peptide metabolic process8.37E-04
59GO:0045493: xylan catabolic process8.37E-04
60GO:0006165: nucleoside diphosphate phosphorylation1.19E-03
61GO:0006228: UTP biosynthetic process1.19E-03
62GO:0009052: pentose-phosphate shunt, non-oxidative branch1.19E-03
63GO:0006424: glutamyl-tRNA aminoacylation1.19E-03
64GO:0009590: detection of gravity1.19E-03
65GO:2001141: regulation of RNA biosynthetic process1.19E-03
66GO:0006241: CTP biosynthetic process1.19E-03
67GO:0044206: UMP salvage1.59E-03
68GO:0006183: GTP biosynthetic process1.59E-03
69GO:0008033: tRNA processing1.81E-03
70GO:0000413: protein peptidyl-prolyl isomerization1.81E-03
71GO:0034052: positive regulation of plant-type hypersensitive response2.03E-03
72GO:0016120: carotene biosynthetic process2.03E-03
73GO:0043097: pyrimidine nucleoside salvage2.03E-03
74GO:0032543: mitochondrial translation2.03E-03
75GO:0016123: xanthophyll biosynthetic process2.03E-03
76GO:0009247: glycolipid biosynthetic process2.03E-03
77GO:0006206: pyrimidine nucleobase metabolic process2.50E-03
78GO:0006655: phosphatidylglycerol biosynthetic process2.50E-03
79GO:0032973: amino acid export2.50E-03
80GO:0010190: cytochrome b6f complex assembly2.50E-03
81GO:0009117: nucleotide metabolic process2.50E-03
82GO:0042549: photosystem II stabilization2.50E-03
83GO:0042372: phylloquinone biosynthetic process3.00E-03
84GO:0009082: branched-chain amino acid biosynthetic process3.00E-03
85GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.00E-03
86GO:0009099: valine biosynthetic process3.00E-03
87GO:0010019: chloroplast-nucleus signaling pathway3.00E-03
88GO:0010555: response to mannitol3.00E-03
89GO:0009955: adaxial/abaxial pattern specification3.00E-03
90GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.54E-03
91GO:0006400: tRNA modification3.54E-03
92GO:0006401: RNA catabolic process3.54E-03
93GO:0043090: amino acid import3.54E-03
94GO:0009642: response to light intensity4.10E-03
95GO:0006402: mRNA catabolic process4.10E-03
96GO:0043068: positive regulation of programmed cell death4.10E-03
97GO:0019375: galactolipid biosynthetic process4.10E-03
98GO:2000070: regulation of response to water deprivation4.10E-03
99GO:0005978: glycogen biosynthetic process4.10E-03
100GO:0009793: embryo development ending in seed dormancy4.35E-03
101GO:0018298: protein-chromophore linkage4.50E-03
102GO:0009657: plastid organization4.70E-03
103GO:0009097: isoleucine biosynthetic process4.70E-03
104GO:0017004: cytochrome complex assembly4.70E-03
105GO:0071482: cellular response to light stimulus4.70E-03
106GO:0080144: amino acid homeostasis5.32E-03
107GO:0045087: innate immune response5.71E-03
108GO:0009637: response to blue light5.71E-03
109GO:0008380: RNA splicing5.75E-03
110GO:0031425: chloroplast RNA processing5.97E-03
111GO:0009089: lysine biosynthetic process via diaminopimelate7.35E-03
112GO:0006415: translational termination7.35E-03
113GO:0009073: aromatic amino acid family biosynthetic process7.35E-03
114GO:0006352: DNA-templated transcription, initiation7.35E-03
115GO:0018119: peptidyl-cysteine S-nitrosylation7.35E-03
116GO:0010114: response to red light7.36E-03
117GO:0016024: CDP-diacylglycerol biosynthetic process8.08E-03
118GO:0045037: protein import into chloroplast stroma8.08E-03
119GO:0009767: photosynthetic electron transport chain8.84E-03
120GO:0010207: photosystem II assembly9.62E-03
121GO:0019253: reductive pentose-phosphate cycle9.62E-03
122GO:0000027: ribosomal large subunit assembly1.21E-02
123GO:0019344: cysteine biosynthetic process1.21E-02
124GO:0009116: nucleoside metabolic process1.21E-02
125GO:0009768: photosynthesis, light harvesting in photosystem I1.30E-02
126GO:0061077: chaperone-mediated protein folding1.39E-02
127GO:0006457: protein folding1.42E-02
128GO:0009814: defense response, incompatible interaction1.48E-02
129GO:0007005: mitochondrion organization1.48E-02
130GO:0009411: response to UV1.57E-02
131GO:0006012: galactose metabolic process1.57E-02
132GO:0009306: protein secretion1.67E-02
133GO:0016117: carotenoid biosynthetic process1.77E-02
134GO:0006397: mRNA processing1.82E-02
135GO:0009741: response to brassinosteroid1.97E-02
136GO:0015986: ATP synthesis coupled proton transport2.07E-02
137GO:0019252: starch biosynthetic process2.18E-02
138GO:0002229: defense response to oomycetes2.29E-02
139GO:0016036: cellular response to phosphate starvation2.29E-02
140GO:0000302: response to reactive oxygen species2.29E-02
141GO:0009451: RNA modification2.51E-02
142GO:0009627: systemic acquired resistance3.22E-02
143GO:0010411: xyloglucan metabolic process3.34E-02
144GO:0009817: defense response to fungus, incompatible interaction3.59E-02
145GO:0048481: plant ovule development3.59E-02
146GO:0010218: response to far red light3.85E-02
147GO:0009631: cold acclimation3.98E-02
148GO:0007568: aging3.98E-02
149GO:0034599: cellular response to oxidative stress4.39E-02
150GO:0030001: metal ion transport4.67E-02
151GO:0042542: response to hydrogen peroxide4.95E-02
RankGO TermAdjusted P value
1GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
4GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
5GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
6GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
7GO:0004418: hydroxymethylbilane synthase activity0.00E+00
8GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
9GO:0005048: signal sequence binding0.00E+00
10GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
11GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0019843: rRNA binding1.79E-28
14GO:0003735: structural constituent of ribosome8.90E-19
15GO:0051920: peroxiredoxin activity1.68E-06
16GO:0016209: antioxidant activity4.15E-06
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.17E-05
18GO:0016851: magnesium chelatase activity2.08E-05
19GO:0008266: poly(U) RNA binding3.72E-05
20GO:0003723: RNA binding7.77E-05
21GO:0003727: single-stranded RNA binding1.26E-04
22GO:0004033: aldo-keto reductase (NADP) activity2.06E-04
23GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.32E-04
24GO:0003984: acetolactate synthase activity2.32E-04
25GO:0004654: polyribonucleotide nucleotidyltransferase activity2.32E-04
26GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.32E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.32E-04
28GO:0004828: serine-tRNA ligase activity2.32E-04
29GO:0003729: mRNA binding4.99E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.15E-04
31GO:0004614: phosphoglucomutase activity5.15E-04
32GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.15E-04
33GO:0009977: proton motive force dependent protein transmembrane transporter activity5.15E-04
34GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.15E-04
35GO:0008479: queuine tRNA-ribosyltransferase activity5.15E-04
36GO:0004148: dihydrolipoyl dehydrogenase activity8.37E-04
37GO:0004751: ribose-5-phosphate isomerase activity8.37E-04
38GO:0070402: NADPH binding8.37E-04
39GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.37E-04
40GO:0035529: NADH pyrophosphatase activity1.19E-03
41GO:0035250: UDP-galactosyltransferase activity1.19E-03
42GO:0016149: translation release factor activity, codon specific1.19E-03
43GO:0004550: nucleoside diphosphate kinase activity1.19E-03
44GO:0043023: ribosomal large subunit binding1.19E-03
45GO:0008097: 5S rRNA binding1.19E-03
46GO:0003690: double-stranded DNA binding1.53E-03
47GO:0043495: protein anchor1.59E-03
48GO:0009044: xylan 1,4-beta-xylosidase activity1.59E-03
49GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.59E-03
50GO:0046556: alpha-L-arabinofuranosidase activity1.59E-03
51GO:0004659: prenyltransferase activity1.59E-03
52GO:0001053: plastid sigma factor activity1.59E-03
53GO:0004845: uracil phosphoribosyltransferase activity1.59E-03
54GO:0016987: sigma factor activity1.59E-03
55GO:0004601: peroxidase activity1.60E-03
56GO:0004130: cytochrome-c peroxidase activity2.50E-03
57GO:0016462: pyrophosphatase activity2.50E-03
58GO:0004849: uridine kinase activity3.00E-03
59GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.00E-03
60GO:0008237: metallopeptidase activity3.08E-03
61GO:0019899: enzyme binding3.54E-03
62GO:0016168: chlorophyll binding3.65E-03
63GO:0008312: 7S RNA binding4.10E-03
64GO:0004034: aldose 1-epimerase activity4.10E-03
65GO:0004222: metalloendopeptidase activity4.97E-03
66GO:0003747: translation release factor activity5.32E-03
67GO:0005509: calcium ion binding7.32E-03
68GO:0051537: 2 iron, 2 sulfur cluster binding7.96E-03
69GO:0000175: 3'-5'-exoribonuclease activity8.84E-03
70GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.62E-03
71GO:0031409: pigment binding1.13E-02
72GO:0005528: FK506 binding1.21E-02
73GO:0004176: ATP-dependent peptidase activity1.39E-02
74GO:0022891: substrate-specific transmembrane transporter activity1.57E-02
75GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.97E-02
76GO:0010181: FMN binding2.07E-02
77GO:0016853: isomerase activity2.07E-02
78GO:0008483: transaminase activity2.74E-02
79GO:0016722: oxidoreductase activity, oxidizing metal ions2.74E-02
80GO:0016597: amino acid binding2.86E-02
81GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.47E-02
82GO:0000287: magnesium ion binding3.72E-02
83GO:0000987: core promoter proximal region sequence-specific DNA binding4.39E-02
84GO:0051539: 4 iron, 4 sulfur cluster binding4.67E-02
85GO:0050661: NADP binding4.67E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009507: chloroplast1.18E-84
4GO:0009570: chloroplast stroma5.96E-61
5GO:0009941: chloroplast envelope7.31E-53
6GO:0009535: chloroplast thylakoid membrane6.78E-31
7GO:0009579: thylakoid8.31E-31
8GO:0009543: chloroplast thylakoid lumen1.56E-19
9GO:0005840: ribosome5.24E-18
10GO:0031977: thylakoid lumen1.84E-15
11GO:0009534: chloroplast thylakoid4.03E-15
12GO:0009654: photosystem II oxygen evolving complex5.18E-10
13GO:0019898: extrinsic component of membrane3.21E-07
14GO:0000311: plastid large ribosomal subunit4.42E-07
15GO:0010007: magnesium chelatase complex9.11E-06
16GO:0009536: plastid1.21E-05
17GO:0010319: stromule2.21E-05
18GO:0048046: apoplast1.62E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.32E-04
20GO:0009344: nitrite reductase complex [NAD(P)H]2.32E-04
21GO:0009547: plastid ribosome2.32E-04
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.09E-04
23GO:0009706: chloroplast inner membrane3.56E-04
24GO:0080085: signal recognition particle, chloroplast targeting5.15E-04
25GO:0000312: plastid small ribosomal subunit7.26E-04
26GO:0030095: chloroplast photosystem II7.26E-04
27GO:0033281: TAT protein transport complex8.37E-04
28GO:0042651: thylakoid membrane1.09E-03
29GO:0042646: plastid nucleoid1.19E-03
30GO:0015935: small ribosomal subunit1.20E-03
31GO:0031969: chloroplast membrane2.22E-03
32GO:0022626: cytosolic ribosome2.27E-03
33GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.50E-03
34GO:0010287: plastoglobule2.85E-03
35GO:0016363: nuclear matrix3.00E-03
36GO:0030529: intracellular ribonucleoprotein complex3.46E-03
37GO:0009533: chloroplast stromal thylakoid3.54E-03
38GO:0009539: photosystem II reaction center4.70E-03
39GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.70E-03
40GO:0015934: large ribosomal subunit5.21E-03
41GO:0005763: mitochondrial small ribosomal subunit5.32E-03
42GO:0032040: small-subunit processome8.08E-03
43GO:0009508: plastid chromosome8.84E-03
44GO:0030076: light-harvesting complex1.04E-02
45GO:0022625: cytosolic large ribosomal subunit1.12E-02
46GO:0009522: photosystem I2.07E-02
47GO:0009523: photosystem II2.18E-02
48GO:0009295: nucleoid2.74E-02
49GO:0022627: cytosolic small ribosomal subunit3.25E-02
50GO:0016020: membrane3.26E-02
51GO:0009707: chloroplast outer membrane3.59E-02
52GO:0009505: plant-type cell wall3.82E-02
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Gene type



Gene DE type