GO Enrichment Analysis of Co-expressed Genes with
AT1G49650
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
3 | GO:0006573: valine metabolic process | 0.00E+00 |
4 | GO:0006223: uracil salvage | 0.00E+00 |
5 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
6 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
7 | GO:0006399: tRNA metabolic process | 0.00E+00 |
8 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
9 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
10 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
11 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
12 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
13 | GO:0006412: translation | 2.73E-16 |
14 | GO:0015995: chlorophyll biosynthetic process | 4.08E-13 |
15 | GO:0042254: ribosome biogenesis | 3.77E-11 |
16 | GO:0032544: plastid translation | 3.93E-10 |
17 | GO:0009658: chloroplast organization | 7.52E-10 |
18 | GO:0015979: photosynthesis | 6.89E-08 |
19 | GO:0009735: response to cytokinin | 1.45E-07 |
20 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.20E-07 |
21 | GO:0042255: ribosome assembly | 4.15E-06 |
22 | GO:0006353: DNA-templated transcription, termination | 4.15E-06 |
23 | GO:0042742: defense response to bacterium | 5.19E-06 |
24 | GO:0006783: heme biosynthetic process | 8.44E-06 |
25 | GO:0032502: developmental process | 1.50E-05 |
26 | GO:0010236: plastoquinone biosynthetic process | 6.05E-05 |
27 | GO:0045038: protein import into chloroplast thylakoid membrane | 6.05E-05 |
28 | GO:0009790: embryo development | 8.95E-05 |
29 | GO:1901259: chloroplast rRNA processing | 1.23E-04 |
30 | GO:0009772: photosynthetic electron transport in photosystem II | 1.62E-04 |
31 | GO:0048564: photosystem I assembly | 2.06E-04 |
32 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.32E-04 |
33 | GO:0043489: RNA stabilization | 2.32E-04 |
34 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 2.32E-04 |
35 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.32E-04 |
36 | GO:1904964: positive regulation of phytol biosynthetic process | 2.32E-04 |
37 | GO:0006551: leucine metabolic process | 2.32E-04 |
38 | GO:0042371: vitamin K biosynthetic process | 2.32E-04 |
39 | GO:1902458: positive regulation of stomatal opening | 2.32E-04 |
40 | GO:0034337: RNA folding | 2.32E-04 |
41 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.32E-04 |
42 | GO:0006434: seryl-tRNA aminoacylation | 2.32E-04 |
43 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.67E-04 |
44 | GO:0010027: thylakoid membrane organization | 3.89E-04 |
45 | GO:0009409: response to cold | 3.94E-04 |
46 | GO:0009773: photosynthetic electron transport in photosystem I | 4.97E-04 |
47 | GO:0019684: photosynthesis, light reaction | 4.97E-04 |
48 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.15E-04 |
49 | GO:0019388: galactose catabolic process | 5.15E-04 |
50 | GO:0008616: queuosine biosynthetic process | 5.15E-04 |
51 | GO:0006729: tetrahydrobiopterin biosynthetic process | 5.15E-04 |
52 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.15E-04 |
53 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 5.15E-04 |
54 | GO:0043039: tRNA aminoacylation | 5.15E-04 |
55 | GO:0045454: cell redox homeostasis | 6.22E-04 |
56 | GO:0006006: glucose metabolic process | 6.45E-04 |
57 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 8.37E-04 |
58 | GO:0006518: peptide metabolic process | 8.37E-04 |
59 | GO:0045493: xylan catabolic process | 8.37E-04 |
60 | GO:0006165: nucleoside diphosphate phosphorylation | 1.19E-03 |
61 | GO:0006228: UTP biosynthetic process | 1.19E-03 |
62 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.19E-03 |
63 | GO:0006424: glutamyl-tRNA aminoacylation | 1.19E-03 |
64 | GO:0009590: detection of gravity | 1.19E-03 |
65 | GO:2001141: regulation of RNA biosynthetic process | 1.19E-03 |
66 | GO:0006241: CTP biosynthetic process | 1.19E-03 |
67 | GO:0044206: UMP salvage | 1.59E-03 |
68 | GO:0006183: GTP biosynthetic process | 1.59E-03 |
69 | GO:0008033: tRNA processing | 1.81E-03 |
70 | GO:0000413: protein peptidyl-prolyl isomerization | 1.81E-03 |
71 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.03E-03 |
72 | GO:0016120: carotene biosynthetic process | 2.03E-03 |
73 | GO:0043097: pyrimidine nucleoside salvage | 2.03E-03 |
74 | GO:0032543: mitochondrial translation | 2.03E-03 |
75 | GO:0016123: xanthophyll biosynthetic process | 2.03E-03 |
76 | GO:0009247: glycolipid biosynthetic process | 2.03E-03 |
77 | GO:0006206: pyrimidine nucleobase metabolic process | 2.50E-03 |
78 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.50E-03 |
79 | GO:0032973: amino acid export | 2.50E-03 |
80 | GO:0010190: cytochrome b6f complex assembly | 2.50E-03 |
81 | GO:0009117: nucleotide metabolic process | 2.50E-03 |
82 | GO:0042549: photosystem II stabilization | 2.50E-03 |
83 | GO:0042372: phylloquinone biosynthetic process | 3.00E-03 |
84 | GO:0009082: branched-chain amino acid biosynthetic process | 3.00E-03 |
85 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.00E-03 |
86 | GO:0009099: valine biosynthetic process | 3.00E-03 |
87 | GO:0010019: chloroplast-nucleus signaling pathway | 3.00E-03 |
88 | GO:0010555: response to mannitol | 3.00E-03 |
89 | GO:0009955: adaxial/abaxial pattern specification | 3.00E-03 |
90 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.54E-03 |
91 | GO:0006400: tRNA modification | 3.54E-03 |
92 | GO:0006401: RNA catabolic process | 3.54E-03 |
93 | GO:0043090: amino acid import | 3.54E-03 |
94 | GO:0009642: response to light intensity | 4.10E-03 |
95 | GO:0006402: mRNA catabolic process | 4.10E-03 |
96 | GO:0043068: positive regulation of programmed cell death | 4.10E-03 |
97 | GO:0019375: galactolipid biosynthetic process | 4.10E-03 |
98 | GO:2000070: regulation of response to water deprivation | 4.10E-03 |
99 | GO:0005978: glycogen biosynthetic process | 4.10E-03 |
100 | GO:0009793: embryo development ending in seed dormancy | 4.35E-03 |
101 | GO:0018298: protein-chromophore linkage | 4.50E-03 |
102 | GO:0009657: plastid organization | 4.70E-03 |
103 | GO:0009097: isoleucine biosynthetic process | 4.70E-03 |
104 | GO:0017004: cytochrome complex assembly | 4.70E-03 |
105 | GO:0071482: cellular response to light stimulus | 4.70E-03 |
106 | GO:0080144: amino acid homeostasis | 5.32E-03 |
107 | GO:0045087: innate immune response | 5.71E-03 |
108 | GO:0009637: response to blue light | 5.71E-03 |
109 | GO:0008380: RNA splicing | 5.75E-03 |
110 | GO:0031425: chloroplast RNA processing | 5.97E-03 |
111 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.35E-03 |
112 | GO:0006415: translational termination | 7.35E-03 |
113 | GO:0009073: aromatic amino acid family biosynthetic process | 7.35E-03 |
114 | GO:0006352: DNA-templated transcription, initiation | 7.35E-03 |
115 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.35E-03 |
116 | GO:0010114: response to red light | 7.36E-03 |
117 | GO:0016024: CDP-diacylglycerol biosynthetic process | 8.08E-03 |
118 | GO:0045037: protein import into chloroplast stroma | 8.08E-03 |
119 | GO:0009767: photosynthetic electron transport chain | 8.84E-03 |
120 | GO:0010207: photosystem II assembly | 9.62E-03 |
121 | GO:0019253: reductive pentose-phosphate cycle | 9.62E-03 |
122 | GO:0000027: ribosomal large subunit assembly | 1.21E-02 |
123 | GO:0019344: cysteine biosynthetic process | 1.21E-02 |
124 | GO:0009116: nucleoside metabolic process | 1.21E-02 |
125 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.30E-02 |
126 | GO:0061077: chaperone-mediated protein folding | 1.39E-02 |
127 | GO:0006457: protein folding | 1.42E-02 |
128 | GO:0009814: defense response, incompatible interaction | 1.48E-02 |
129 | GO:0007005: mitochondrion organization | 1.48E-02 |
130 | GO:0009411: response to UV | 1.57E-02 |
131 | GO:0006012: galactose metabolic process | 1.57E-02 |
132 | GO:0009306: protein secretion | 1.67E-02 |
133 | GO:0016117: carotenoid biosynthetic process | 1.77E-02 |
134 | GO:0006397: mRNA processing | 1.82E-02 |
135 | GO:0009741: response to brassinosteroid | 1.97E-02 |
136 | GO:0015986: ATP synthesis coupled proton transport | 2.07E-02 |
137 | GO:0019252: starch biosynthetic process | 2.18E-02 |
138 | GO:0002229: defense response to oomycetes | 2.29E-02 |
139 | GO:0016036: cellular response to phosphate starvation | 2.29E-02 |
140 | GO:0000302: response to reactive oxygen species | 2.29E-02 |
141 | GO:0009451: RNA modification | 2.51E-02 |
142 | GO:0009627: systemic acquired resistance | 3.22E-02 |
143 | GO:0010411: xyloglucan metabolic process | 3.34E-02 |
144 | GO:0009817: defense response to fungus, incompatible interaction | 3.59E-02 |
145 | GO:0048481: plant ovule development | 3.59E-02 |
146 | GO:0010218: response to far red light | 3.85E-02 |
147 | GO:0009631: cold acclimation | 3.98E-02 |
148 | GO:0007568: aging | 3.98E-02 |
149 | GO:0034599: cellular response to oxidative stress | 4.39E-02 |
150 | GO:0030001: metal ion transport | 4.67E-02 |
151 | GO:0042542: response to hydrogen peroxide | 4.95E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
2 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
4 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
5 | GO:0004853: uroporphyrinogen decarboxylase activity | 0.00E+00 |
6 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
7 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
8 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
9 | GO:0005048: signal sequence binding | 0.00E+00 |
10 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
11 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
12 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
13 | GO:0019843: rRNA binding | 1.79E-28 |
14 | GO:0003735: structural constituent of ribosome | 8.90E-19 |
15 | GO:0051920: peroxiredoxin activity | 1.68E-06 |
16 | GO:0016209: antioxidant activity | 4.15E-06 |
17 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.17E-05 |
18 | GO:0016851: magnesium chelatase activity | 2.08E-05 |
19 | GO:0008266: poly(U) RNA binding | 3.72E-05 |
20 | GO:0003723: RNA binding | 7.77E-05 |
21 | GO:0003727: single-stranded RNA binding | 1.26E-04 |
22 | GO:0004033: aldo-keto reductase (NADP) activity | 2.06E-04 |
23 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.32E-04 |
24 | GO:0003984: acetolactate synthase activity | 2.32E-04 |
25 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.32E-04 |
26 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.32E-04 |
27 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.32E-04 |
28 | GO:0004828: serine-tRNA ligase activity | 2.32E-04 |
29 | GO:0003729: mRNA binding | 4.99E-04 |
30 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 5.15E-04 |
31 | GO:0004614: phosphoglucomutase activity | 5.15E-04 |
32 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.15E-04 |
33 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 5.15E-04 |
34 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 5.15E-04 |
35 | GO:0008479: queuine tRNA-ribosyltransferase activity | 5.15E-04 |
36 | GO:0004148: dihydrolipoyl dehydrogenase activity | 8.37E-04 |
37 | GO:0004751: ribose-5-phosphate isomerase activity | 8.37E-04 |
38 | GO:0070402: NADPH binding | 8.37E-04 |
39 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 8.37E-04 |
40 | GO:0035529: NADH pyrophosphatase activity | 1.19E-03 |
41 | GO:0035250: UDP-galactosyltransferase activity | 1.19E-03 |
42 | GO:0016149: translation release factor activity, codon specific | 1.19E-03 |
43 | GO:0004550: nucleoside diphosphate kinase activity | 1.19E-03 |
44 | GO:0043023: ribosomal large subunit binding | 1.19E-03 |
45 | GO:0008097: 5S rRNA binding | 1.19E-03 |
46 | GO:0003690: double-stranded DNA binding | 1.53E-03 |
47 | GO:0043495: protein anchor | 1.59E-03 |
48 | GO:0009044: xylan 1,4-beta-xylosidase activity | 1.59E-03 |
49 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.59E-03 |
50 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.59E-03 |
51 | GO:0004659: prenyltransferase activity | 1.59E-03 |
52 | GO:0001053: plastid sigma factor activity | 1.59E-03 |
53 | GO:0004845: uracil phosphoribosyltransferase activity | 1.59E-03 |
54 | GO:0016987: sigma factor activity | 1.59E-03 |
55 | GO:0004601: peroxidase activity | 1.60E-03 |
56 | GO:0004130: cytochrome-c peroxidase activity | 2.50E-03 |
57 | GO:0016462: pyrophosphatase activity | 2.50E-03 |
58 | GO:0004849: uridine kinase activity | 3.00E-03 |
59 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.00E-03 |
60 | GO:0008237: metallopeptidase activity | 3.08E-03 |
61 | GO:0019899: enzyme binding | 3.54E-03 |
62 | GO:0016168: chlorophyll binding | 3.65E-03 |
63 | GO:0008312: 7S RNA binding | 4.10E-03 |
64 | GO:0004034: aldose 1-epimerase activity | 4.10E-03 |
65 | GO:0004222: metalloendopeptidase activity | 4.97E-03 |
66 | GO:0003747: translation release factor activity | 5.32E-03 |
67 | GO:0005509: calcium ion binding | 7.32E-03 |
68 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.96E-03 |
69 | GO:0000175: 3'-5'-exoribonuclease activity | 8.84E-03 |
70 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.62E-03 |
71 | GO:0031409: pigment binding | 1.13E-02 |
72 | GO:0005528: FK506 binding | 1.21E-02 |
73 | GO:0004176: ATP-dependent peptidase activity | 1.39E-02 |
74 | GO:0022891: substrate-specific transmembrane transporter activity | 1.57E-02 |
75 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.97E-02 |
76 | GO:0010181: FMN binding | 2.07E-02 |
77 | GO:0016853: isomerase activity | 2.07E-02 |
78 | GO:0008483: transaminase activity | 2.74E-02 |
79 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.74E-02 |
80 | GO:0016597: amino acid binding | 2.86E-02 |
81 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 3.47E-02 |
82 | GO:0000287: magnesium ion binding | 3.72E-02 |
83 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 4.39E-02 |
84 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.67E-02 |
85 | GO:0050661: NADP binding | 4.67E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0044391: ribosomal subunit | 0.00E+00 |
2 | GO:0005948: acetolactate synthase complex | 0.00E+00 |
3 | GO:0009507: chloroplast | 1.18E-84 |
4 | GO:0009570: chloroplast stroma | 5.96E-61 |
5 | GO:0009941: chloroplast envelope | 7.31E-53 |
6 | GO:0009535: chloroplast thylakoid membrane | 6.78E-31 |
7 | GO:0009579: thylakoid | 8.31E-31 |
8 | GO:0009543: chloroplast thylakoid lumen | 1.56E-19 |
9 | GO:0005840: ribosome | 5.24E-18 |
10 | GO:0031977: thylakoid lumen | 1.84E-15 |
11 | GO:0009534: chloroplast thylakoid | 4.03E-15 |
12 | GO:0009654: photosystem II oxygen evolving complex | 5.18E-10 |
13 | GO:0019898: extrinsic component of membrane | 3.21E-07 |
14 | GO:0000311: plastid large ribosomal subunit | 4.42E-07 |
15 | GO:0010007: magnesium chelatase complex | 9.11E-06 |
16 | GO:0009536: plastid | 1.21E-05 |
17 | GO:0010319: stromule | 2.21E-05 |
18 | GO:0048046: apoplast | 1.62E-04 |
19 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.32E-04 |
20 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.32E-04 |
21 | GO:0009547: plastid ribosome | 2.32E-04 |
22 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.09E-04 |
23 | GO:0009706: chloroplast inner membrane | 3.56E-04 |
24 | GO:0080085: signal recognition particle, chloroplast targeting | 5.15E-04 |
25 | GO:0000312: plastid small ribosomal subunit | 7.26E-04 |
26 | GO:0030095: chloroplast photosystem II | 7.26E-04 |
27 | GO:0033281: TAT protein transport complex | 8.37E-04 |
28 | GO:0042651: thylakoid membrane | 1.09E-03 |
29 | GO:0042646: plastid nucleoid | 1.19E-03 |
30 | GO:0015935: small ribosomal subunit | 1.20E-03 |
31 | GO:0031969: chloroplast membrane | 2.22E-03 |
32 | GO:0022626: cytosolic ribosome | 2.27E-03 |
33 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.50E-03 |
34 | GO:0010287: plastoglobule | 2.85E-03 |
35 | GO:0016363: nuclear matrix | 3.00E-03 |
36 | GO:0030529: intracellular ribonucleoprotein complex | 3.46E-03 |
37 | GO:0009533: chloroplast stromal thylakoid | 3.54E-03 |
38 | GO:0009539: photosystem II reaction center | 4.70E-03 |
39 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.70E-03 |
40 | GO:0015934: large ribosomal subunit | 5.21E-03 |
41 | GO:0005763: mitochondrial small ribosomal subunit | 5.32E-03 |
42 | GO:0032040: small-subunit processome | 8.08E-03 |
43 | GO:0009508: plastid chromosome | 8.84E-03 |
44 | GO:0030076: light-harvesting complex | 1.04E-02 |
45 | GO:0022625: cytosolic large ribosomal subunit | 1.12E-02 |
46 | GO:0009522: photosystem I | 2.07E-02 |
47 | GO:0009523: photosystem II | 2.18E-02 |
48 | GO:0009295: nucleoid | 2.74E-02 |
49 | GO:0022627: cytosolic small ribosomal subunit | 3.25E-02 |
50 | GO:0016020: membrane | 3.26E-02 |
51 | GO:0009707: chloroplast outer membrane | 3.59E-02 |
52 | GO:0009505: plant-type cell wall | 3.82E-02 |