Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G49580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045014: negative regulation of transcription by glucose0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
8GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.33E-06
9GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway3.09E-04
10GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.09E-04
11GO:0006824: cobalt ion transport3.09E-04
12GO:0043266: regulation of potassium ion transport3.09E-04
13GO:0010480: microsporocyte differentiation3.09E-04
14GO:0031338: regulation of vesicle fusion3.09E-04
15GO:0080051: cutin transport3.09E-04
16GO:0071461: cellular response to redox state3.09E-04
17GO:2000021: regulation of ion homeostasis3.09E-04
18GO:0071482: cellular response to light stimulus3.89E-04
19GO:0010289: homogalacturonan biosynthetic process6.76E-04
20GO:0010270: photosystem II oxygen evolving complex assembly6.76E-04
21GO:0010198: synergid death6.76E-04
22GO:0015908: fatty acid transport6.76E-04
23GO:0080005: photosystem stoichiometry adjustment6.76E-04
24GO:0010115: regulation of abscisic acid biosynthetic process6.76E-04
25GO:0034755: iron ion transmembrane transport6.76E-04
26GO:0045717: negative regulation of fatty acid biosynthetic process6.76E-04
27GO:0010541: acropetal auxin transport6.76E-04
28GO:0006816: calcium ion transport7.44E-04
29GO:0015995: chlorophyll biosynthetic process8.13E-04
30GO:0010160: formation of animal organ boundary1.10E-03
31GO:0006518: peptide metabolic process1.10E-03
32GO:0090630: activation of GTPase activity1.10E-03
33GO:2001295: malonyl-CoA biosynthetic process1.10E-03
34GO:0051639: actin filament network formation1.57E-03
35GO:0009152: purine ribonucleotide biosynthetic process1.57E-03
36GO:0046653: tetrahydrofolate metabolic process1.57E-03
37GO:0043481: anthocyanin accumulation in tissues in response to UV light1.57E-03
38GO:0010306: rhamnogalacturonan II biosynthetic process1.57E-03
39GO:0009226: nucleotide-sugar biosynthetic process1.57E-03
40GO:2001141: regulation of RNA biosynthetic process1.57E-03
41GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.57E-03
42GO:0007231: osmosensory signaling pathway1.57E-03
43GO:0016998: cell wall macromolecule catabolic process1.80E-03
44GO:0051764: actin crosslink formation2.11E-03
45GO:0006552: leucine catabolic process2.11E-03
46GO:0033500: carbohydrate homeostasis2.11E-03
47GO:0031122: cytoplasmic microtubule organization2.11E-03
48GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.11E-03
49GO:0010021: amylopectin biosynthetic process2.11E-03
50GO:0010222: stem vascular tissue pattern formation2.11E-03
51GO:0048443: stamen development2.33E-03
52GO:0000304: response to singlet oxygen2.69E-03
53GO:0016120: carotene biosynthetic process2.69E-03
54GO:0048497: maintenance of floral organ identity2.69E-03
55GO:0007094: mitotic spindle assembly checkpoint2.69E-03
56GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.32E-03
57GO:0006828: manganese ion transport3.32E-03
58GO:0009913: epidermal cell differentiation3.32E-03
59GO:0006655: phosphatidylglycerol biosynthetic process3.32E-03
60GO:0060918: auxin transport3.32E-03
61GO:0018258: protein O-linked glycosylation via hydroxyproline3.32E-03
62GO:0006574: valine catabolic process3.32E-03
63GO:0010405: arabinogalactan protein metabolic process3.32E-03
64GO:0010304: PSII associated light-harvesting complex II catabolic process3.32E-03
65GO:0006751: glutathione catabolic process3.32E-03
66GO:0042549: photosystem II stabilization3.32E-03
67GO:0071554: cell wall organization or biogenesis3.63E-03
68GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.00E-03
69GO:2000033: regulation of seed dormancy process4.00E-03
70GO:0009082: branched-chain amino acid biosynthetic process4.00E-03
71GO:0006955: immune response4.72E-03
72GO:0007050: cell cycle arrest4.72E-03
73GO:0048437: floral organ development4.72E-03
74GO:0010027: thylakoid membrane organization5.25E-03
75GO:0015996: chlorophyll catabolic process6.28E-03
76GO:0009657: plastid organization6.28E-03
77GO:0000373: Group II intron splicing7.12E-03
78GO:0048589: developmental growth7.12E-03
79GO:0009638: phototropism8.01E-03
80GO:0006779: porphyrin-containing compound biosynthetic process8.01E-03
81GO:0007346: regulation of mitotic cell cycle8.01E-03
82GO:0010162: seed dormancy process8.92E-03
83GO:0006782: protoporphyrinogen IX biosynthetic process8.92E-03
84GO:0019538: protein metabolic process8.92E-03
85GO:0046856: phosphatidylinositol dephosphorylation9.88E-03
86GO:0006415: translational termination9.88E-03
87GO:1903507: negative regulation of nucleic acid-templated transcription9.88E-03
88GO:0006352: DNA-templated transcription, initiation9.88E-03
89GO:0018119: peptidyl-cysteine S-nitrosylation9.88E-03
90GO:0048229: gametophyte development9.88E-03
91GO:0008361: regulation of cell size1.09E-02
92GO:0006820: anion transport1.09E-02
93GO:0005983: starch catabolic process1.09E-02
94GO:0016024: CDP-diacylglycerol biosynthetic process1.09E-02
95GO:0010152: pollen maturation1.09E-02
96GO:0010588: cotyledon vascular tissue pattern formation1.19E-02
97GO:0010102: lateral root morphogenesis1.19E-02
98GO:0009785: blue light signaling pathway1.19E-02
99GO:0030048: actin filament-based movement1.19E-02
100GO:0009718: anthocyanin-containing compound biosynthetic process1.19E-02
101GO:0010075: regulation of meristem growth1.19E-02
102GO:0005975: carbohydrate metabolic process1.28E-02
103GO:0048768: root hair cell tip growth1.30E-02
104GO:0010143: cutin biosynthetic process1.30E-02
105GO:0010540: basipetal auxin transport1.30E-02
106GO:0009934: regulation of meristem structural organization1.30E-02
107GO:0006468: protein phosphorylation1.32E-02
108GO:0071732: cellular response to nitric oxide1.40E-02
109GO:0010030: positive regulation of seed germination1.40E-02
110GO:0070588: calcium ion transmembrane transport1.40E-02
111GO:0010025: wax biosynthetic process1.52E-02
112GO:0006857: oligopeptide transport1.63E-02
113GO:0051017: actin filament bundle assembly1.63E-02
114GO:0008299: isoprenoid biosynthetic process1.75E-02
115GO:0007017: microtubule-based process1.75E-02
116GO:0009611: response to wounding1.87E-02
117GO:0031408: oxylipin biosynthetic process1.87E-02
118GO:0035428: hexose transmembrane transport2.00E-02
119GO:2000022: regulation of jasmonic acid mediated signaling pathway2.00E-02
120GO:0071369: cellular response to ethylene stimulus2.12E-02
121GO:0009306: protein secretion2.25E-02
122GO:0016117: carotenoid biosynthetic process2.39E-02
123GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.39E-02
124GO:0048653: anther development2.52E-02
125GO:0042631: cellular response to water deprivation2.52E-02
126GO:0009958: positive gravitropism2.66E-02
127GO:0010182: sugar mediated signaling pathway2.66E-02
128GO:0048868: pollen tube development2.66E-02
129GO:0046323: glucose import2.66E-02
130GO:0016042: lipid catabolic process2.83E-02
131GO:0048825: cotyledon development2.95E-02
132GO:0019252: starch biosynthetic process2.95E-02
133GO:0007264: small GTPase mediated signal transduction3.24E-02
134GO:0008152: metabolic process3.31E-02
135GO:0071281: cellular response to iron ion3.39E-02
136GO:1901657: glycosyl compound metabolic process3.39E-02
137GO:0006633: fatty acid biosynthetic process3.40E-02
138GO:0016125: sterol metabolic process3.55E-02
139GO:0009639: response to red or far red light3.55E-02
140GO:0016126: sterol biosynthetic process4.02E-02
141GO:0042128: nitrate assimilation4.35E-02
142GO:0006974: cellular response to DNA damage stimulus4.35E-02
143GO:0010411: xyloglucan metabolic process4.51E-02
144GO:0009817: defense response to fungus, incompatible interaction4.85E-02
145GO:0030244: cellulose biosynthetic process4.85E-02
146GO:0018298: protein-chromophore linkage4.85E-02
RankGO TermAdjusted P value
1GO:0004496: mevalonate kinase activity0.00E+00
2GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
3GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
4GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
5GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
6GO:0005528: FK506 binding1.17E-04
7GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.09E-04
8GO:0005227: calcium activated cation channel activity3.09E-04
9GO:0042834: peptidoglycan binding3.09E-04
10GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.09E-04
11GO:0050308: sugar-phosphatase activity3.09E-04
12GO:0004856: xylulokinase activity3.09E-04
13GO:0008568: microtubule-severing ATPase activity3.09E-04
14GO:0019203: carbohydrate phosphatase activity3.09E-04
15GO:0034256: chlorophyll(ide) b reductase activity3.09E-04
16GO:0015245: fatty acid transporter activity3.09E-04
17GO:0004328: formamidase activity3.09E-04
18GO:0033201: alpha-1,4-glucan synthase activity6.76E-04
19GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity6.76E-04
20GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity6.76E-04
21GO:0003839: gamma-glutamylcyclotransferase activity6.76E-04
22GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.10E-03
23GO:0004373: glycogen (starch) synthase activity1.10E-03
24GO:0003913: DNA photolyase activity1.10E-03
25GO:0004075: biotin carboxylase activity1.10E-03
26GO:0030267: glyoxylate reductase (NADP) activity1.10E-03
27GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.10E-03
28GO:0070402: NADPH binding1.10E-03
29GO:0008864: formyltetrahydrofolate deformylase activity1.10E-03
30GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.10E-03
31GO:0052655: L-valine transaminase activity1.57E-03
32GO:0001872: (1->3)-beta-D-glucan binding1.57E-03
33GO:0019201: nucleotide kinase activity1.57E-03
34GO:0004445: inositol-polyphosphate 5-phosphatase activity1.57E-03
35GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.57E-03
36GO:0016149: translation release factor activity, codon specific1.57E-03
37GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.57E-03
38GO:0052656: L-isoleucine transaminase activity1.57E-03
39GO:0052654: L-leucine transaminase activity1.57E-03
40GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.08E-03
41GO:0010011: auxin binding2.11E-03
42GO:0016836: hydro-lyase activity2.11E-03
43GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.11E-03
44GO:0016987: sigma factor activity2.11E-03
45GO:0052793: pectin acetylesterase activity2.11E-03
46GO:0004084: branched-chain-amino-acid transaminase activity2.11E-03
47GO:0009011: starch synthase activity2.11E-03
48GO:0008526: phosphatidylinositol transporter activity2.11E-03
49GO:0001053: plastid sigma factor activity2.11E-03
50GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.25E-03
51GO:0008381: mechanically-gated ion channel activity2.69E-03
52GO:0016773: phosphotransferase activity, alcohol group as acceptor2.69E-03
53GO:0017137: Rab GTPase binding2.69E-03
54GO:0003989: acetyl-CoA carboxylase activity2.69E-03
55GO:0016788: hydrolase activity, acting on ester bonds3.12E-03
56GO:1990714: hydroxyproline O-galactosyltransferase activity3.32E-03
57GO:0035673: oligopeptide transmembrane transporter activity3.32E-03
58GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.32E-03
59GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.32E-03
60GO:0042578: phosphoric ester hydrolase activity3.32E-03
61GO:2001070: starch binding3.32E-03
62GO:0019901: protein kinase binding3.39E-03
63GO:0004674: protein serine/threonine kinase activity3.95E-03
64GO:0051920: peroxiredoxin activity4.00E-03
65GO:0015631: tubulin binding4.00E-03
66GO:0004017: adenylate kinase activity4.00E-03
67GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.00E-03
68GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.00E-03
69GO:0009881: photoreceptor activity4.72E-03
70GO:0052689: carboxylic ester hydrolase activity4.90E-03
71GO:0016413: O-acetyltransferase activity4.96E-03
72GO:0004033: aldo-keto reductase (NADP) activity5.48E-03
73GO:0016209: antioxidant activity5.48E-03
74GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.12E-03
75GO:0003747: translation release factor activity7.12E-03
76GO:0005381: iron ion transmembrane transporter activity8.01E-03
77GO:0005384: manganese ion transmembrane transporter activity8.01E-03
78GO:0047617: acyl-CoA hydrolase activity8.01E-03
79GO:0016787: hydrolase activity9.21E-03
80GO:0047372: acylglycerol lipase activity9.88E-03
81GO:0005516: calmodulin binding1.05E-02
82GO:0008378: galactosyltransferase activity1.09E-02
83GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.09E-02
84GO:0015198: oligopeptide transporter activity1.09E-02
85GO:0004565: beta-galactosidase activity1.19E-02
86GO:0010329: auxin efflux transmembrane transporter activity1.19E-02
87GO:0004022: alcohol dehydrogenase (NAD) activity1.19E-02
88GO:0015095: magnesium ion transmembrane transporter activity1.19E-02
89GO:0005262: calcium channel activity1.19E-02
90GO:0004672: protein kinase activity1.20E-02
91GO:0003774: motor activity1.30E-02
92GO:0003714: transcription corepressor activity1.63E-02
93GO:0005524: ATP binding1.67E-02
94GO:0004707: MAP kinase activity1.87E-02
95GO:0033612: receptor serine/threonine kinase binding1.87E-02
96GO:0019706: protein-cysteine S-palmitoyltransferase activity1.87E-02
97GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.00E-02
98GO:0030570: pectate lyase activity2.12E-02
99GO:0004871: signal transducer activity2.39E-02
100GO:0016758: transferase activity, transferring hexosyl groups2.64E-02
101GO:0003713: transcription coactivator activity2.66E-02
102GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.79E-02
103GO:0016853: isomerase activity2.80E-02
104GO:0005355: glucose transmembrane transporter activity2.80E-02
105GO:0016829: lyase activity2.93E-02
106GO:0048038: quinone binding3.09E-02
107GO:0016762: xyloglucan:xyloglucosyl transferase activity3.09E-02
108GO:0051015: actin filament binding3.39E-02
109GO:0005200: structural constituent of cytoskeleton3.70E-02
110GO:0016597: amino acid binding3.86E-02
111GO:0009931: calcium-dependent protein serine/threonine kinase activity4.35E-02
112GO:0102483: scopolin beta-glucosidase activity4.51E-02
113GO:0004721: phosphoprotein phosphatase activity4.51E-02
114GO:0030247: polysaccharide binding4.51E-02
115GO:0004683: calmodulin-dependent protein kinase activity4.51E-02
116GO:0016798: hydrolase activity, acting on glycosyl bonds4.51E-02
117GO:0016301: kinase activity4.77E-02
118GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.85E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0009507: chloroplast1.20E-09
3GO:0009570: chloroplast stroma2.26E-07
4GO:0009534: chloroplast thylakoid2.49E-05
5GO:0009535: chloroplast thylakoid membrane3.26E-05
6GO:0005886: plasma membrane4.62E-05
7GO:0009941: chloroplast envelope5.55E-05
8GO:0031969: chloroplast membrane9.49E-04
9GO:0009897: external side of plasma membrane1.10E-03
10GO:0032432: actin filament bundle1.57E-03
11GO:0005828: kinetochore microtubule2.11E-03
12GO:0000776: kinetochore2.69E-03
13GO:0009505: plant-type cell wall2.89E-03
14GO:0010369: chromocenter4.00E-03
15GO:0000777: condensed chromosome kinetochore4.00E-03
16GO:0009543: chloroplast thylakoid lumen5.21E-03
17GO:0009501: amyloplast5.48E-03
18GO:0016021: integral component of membrane5.80E-03
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.12E-03
20GO:0045298: tubulin complex7.12E-03
21GO:0005876: spindle microtubule8.01E-03
22GO:0016459: myosin complex8.92E-03
23GO:0005884: actin filament9.88E-03
24GO:0031977: thylakoid lumen1.03E-02
25GO:0030659: cytoplasmic vesicle membrane1.30E-02
26GO:0043234: protein complex1.52E-02
27GO:0009579: thylakoid2.36E-02
28GO:0010287: plastoglobule2.57E-02
29GO:0000139: Golgi membrane2.92E-02
30GO:0000151: ubiquitin ligase complex4.85E-02
31GO:0046658: anchored component of plasma membrane4.93E-02
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Gene type



Gene DE type