co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G49500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0042593: glucose homeostasis	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:2000505: regulation of energy homeostasis	0.00E+00
5	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
6	GO:0033494: ferulate metabolic process	0.00E+00
7	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
8	GO:0061635: regulation of protein complex stability	0.00E+00
9	GO:0016553: base conversion or substitution editing	0.00E+00
10	GO:0005996: monosaccharide metabolic process	0.00E+00
11	GO:0015979: photosynthesis	1.57E-23
12	GO:0009735: response to cytokinin	1.21E-10
13	GO:0009773: photosynthetic electron transport in photosystem I	1.48E-09
14	GO:0006412: translation	6.44E-08
15	GO:0015995: chlorophyll biosynthetic process	1.10E-07
16	GO:0018298: protein-chromophore linkage	1.61E-07
17	GO:0042254: ribosome biogenesis	3.49E-07
18	GO:0009768: photosynthesis, light harvesting in photosystem I	1.15E-06
19	GO:0010206: photosystem II repair	1.63E-06
20	GO:0015976: carbon utilization	2.06E-06
21	GO:0009409: response to cold	7.98E-06
22	GO:0010207: photosystem II assembly	1.22E-05
23	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.28E-05
24	GO:0010114: response to red light	1.42E-05
25	GO:0010196: nonphotochemical quenching	2.29E-05
26	GO:0006000: fructose metabolic process	4.29E-05
27	GO:0032544: plastid translation	4.74E-05
28	GO:2001141: regulation of RNA biosynthetic process	9.12E-05
29	GO:0080170: hydrogen peroxide transmembrane transport	9.12E-05
30	GO:0010037: response to carbon dioxide	1.57E-04
31	GO:0045727: positive regulation of translation	1.57E-04
32	GO:2000122: negative regulation of stomatal complex development	1.57E-04
33	GO:0006546: glycine catabolic process	1.57E-04
34	GO:0019253: reductive pentose-phosphate cycle	2.35E-04
35	GO:0042549: photosystem II stabilization	3.38E-04
36	GO:0010019: chloroplast-nucleus signaling pathway	4.50E-04
37	GO:0010218: response to far red light	4.90E-04
38	GO:0042742: defense response to bacterium	5.03E-04
39	GO:0006106: fumarate metabolic process	5.40E-04
40	GO:0051247: positive regulation of protein metabolic process	5.40E-04
41	GO:0034337: RNA folding	5.40E-04
42	GO:2000905: negative regulation of starch metabolic process	5.40E-04
43	GO:0071588: hydrogen peroxide mediated signaling pathway	5.40E-04
44	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	5.40E-04
45	GO:0043489: RNA stabilization	5.40E-04
46	GO:1904966: positive regulation of vitamin E biosynthetic process	5.40E-04
47	GO:0071370: cellular response to gibberellin stimulus	5.40E-04
48	GO:0000481: maturation of 5S rRNA	5.40E-04
49	GO:1904964: positive regulation of phytol biosynthetic process	5.40E-04
50	GO:0006810: transport	5.46E-04
51	GO:0009645: response to low light intensity stimulus	5.77E-04
52	GO:0009637: response to blue light	6.09E-04
53	GO:0009658: chloroplast organization	7.21E-04
54	GO:0034220: ion transmembrane transport	8.21E-04
55	GO:0006002: fructose 6-phosphate metabolic process	8.74E-04
56	GO:0071482: cellular response to light stimulus	8.74E-04
57	GO:0009657: plastid organization	8.74E-04
58	GO:0006521: regulation of cellular amino acid metabolic process	1.16E-03
59	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.16E-03
60	GO:1900871: chloroplast mRNA modification	1.16E-03
61	GO:0034755: iron ion transmembrane transport	1.16E-03
62	GO:0009638: phototropism	1.23E-03
63	GO:0045490: pectin catabolic process	1.31E-03
64	GO:0018119: peptidyl-cysteine S-nitrosylation	1.66E-03
65	GO:0019684: photosynthesis, light reaction	1.66E-03
66	GO:0006352: DNA-templated transcription, initiation	1.66E-03
67	GO:0045493: xylan catabolic process	1.91E-03
68	GO:0048586: regulation of long-day photoperiodism, flowering	1.91E-03
69	GO:0090391: granum assembly	1.91E-03
70	GO:0006518: peptide metabolic process	1.91E-03
71	GO:0006013: mannose metabolic process	1.91E-03
72	GO:0006094: gluconeogenesis	2.17E-03
73	GO:0009767: photosynthetic electron transport chain	2.17E-03
74	GO:0005986: sucrose biosynthetic process	2.17E-03
75	GO:0042128: nitrate assimilation	2.17E-03
76	GO:0006006: glucose metabolic process	2.17E-03
77	GO:0009740: gibberellic acid mediated signaling pathway	2.21E-03
78	GO:0010143: cutin biosynthetic process	2.45E-03
79	GO:0010030: positive regulation of seed germination	2.74E-03
80	GO:0005985: sucrose metabolic process	2.74E-03
81	GO:0055070: copper ion homeostasis	2.76E-03
82	GO:1902476: chloride transmembrane transport	2.76E-03
83	GO:0051513: regulation of monopolar cell growth	2.76E-03
84	GO:0071484: cellular response to light intensity	2.76E-03
85	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.76E-03
86	GO:1901332: negative regulation of lateral root development	2.76E-03
87	GO:0006833: water transport	3.06E-03
88	GO:0009631: cold acclimation	3.18E-03
89	GO:0010109: regulation of photosynthesis	3.72E-03
90	GO:0019464: glycine decarboxylation via glycine cleavage system	3.72E-03
91	GO:0009765: photosynthesis, light harvesting	3.72E-03
92	GO:2000306: positive regulation of photomorphogenesis	3.72E-03
93	GO:0015994: chlorophyll metabolic process	3.72E-03
94	GO:0030104: water homeostasis	3.72E-03
95	GO:0061077: chaperone-mediated protein folding	4.13E-03
96	GO:0006461: protein complex assembly	4.78E-03
97	GO:0009107: lipoate biosynthetic process	4.78E-03
98	GO:0034052: positive regulation of plant-type hypersensitive response	4.78E-03
99	GO:0032543: mitochondrial translation	4.78E-03
100	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.93E-03
101	GO:0009644: response to high light intensity	5.48E-03
102	GO:0045454: cell redox homeostasis	5.71E-03
103	GO:1902456: regulation of stomatal opening	5.92E-03
104	GO:0032973: amino acid export	5.92E-03
105	GO:0000413: protein peptidyl-prolyl isomerization	6.30E-03
106	GO:0042631: cellular response to water deprivation	6.30E-03
107	GO:0009664: plant-type cell wall organization	6.63E-03
108	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.16E-03
109	GO:0017148: negative regulation of translation	7.16E-03
110	GO:0000302: response to reactive oxygen species	8.41E-03
111	GO:0009772: photosynthetic electron transport in photosystem II	8.47E-03
112	GO:0043090: amino acid import	8.47E-03
113	GO:1900056: negative regulation of leaf senescence	8.47E-03
114	GO:0006821: chloride transport	8.47E-03
115	GO:0009769: photosynthesis, light harvesting in photosystem II	8.47E-03
116	GO:0050829: defense response to Gram-negative bacterium	8.47E-03
117	GO:0010492: maintenance of shoot apical meristem identity	9.87E-03
118	GO:0008610: lipid biosynthetic process	9.87E-03
119	GO:0030091: protein repair	9.87E-03
120	GO:0043068: positive regulation of programmed cell death	9.87E-03
121	GO:0042255: ribosome assembly	9.87E-03
122	GO:0046620: regulation of organ growth	9.87E-03
123	GO:0032508: DNA duplex unwinding	9.87E-03
124	GO:0009828: plant-type cell wall loosening	1.02E-02
125	GO:0042545: cell wall modification	1.10E-02
126	GO:0010027: thylakoid membrane organization	1.22E-02
127	GO:0009051: pentose-phosphate shunt, oxidative branch	1.29E-02
128	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.29E-02
129	GO:0080144: amino acid homeostasis	1.29E-02
130	GO:0048507: meristem development	1.29E-02
131	GO:0006783: heme biosynthetic process	1.29E-02
132	GO:0010411: xyloglucan metabolic process	1.44E-02
133	GO:0009817: defense response to fungus, incompatible interaction	1.60E-02
134	GO:0006949: syncytium formation	1.62E-02
135	GO:0009299: mRNA transcription	1.62E-02
136	GO:0006782: protoporphyrinogen IX biosynthetic process	1.62E-02
137	GO:0009684: indoleacetic acid biosynthetic process	1.80E-02
138	GO:0010015: root morphogenesis	1.80E-02
139	GO:0009698: phenylpropanoid metabolic process	1.80E-02
140	GO:0009089: lysine biosynthetic process via diaminopimelate	1.80E-02
141	GO:0043085: positive regulation of catalytic activity	1.80E-02
142	GO:0006879: cellular iron ion homeostasis	1.80E-02
143	GO:0000272: polysaccharide catabolic process	1.80E-02
144	GO:0009750: response to fructose	1.80E-02
145	GO:0010119: regulation of stomatal movement	1.85E-02
146	GO:0015706: nitrate transport	1.98E-02
147	GO:0016024: CDP-diacylglycerol biosynthetic process	1.98E-02
148	GO:0034599: cellular response to oxidative stress	2.12E-02
149	GO:0009725: response to hormone	2.17E-02
150	GO:0006108: malate metabolic process	2.17E-02
151	GO:0007623: circadian rhythm	2.29E-02
152	GO:0030001: metal ion transport	2.32E-02
153	GO:0032259: methylation	2.54E-02
154	GO:0010167: response to nitrate	2.56E-02
155	GO:0046688: response to copper ion	2.56E-02
156	GO:0006636: unsaturated fatty acid biosynthetic process	2.77E-02
157	GO:0010468: regulation of gene expression	2.85E-02
158	GO:0005992: trehalose biosynthetic process	2.98E-02
159	GO:0000027: ribosomal large subunit assembly	2.98E-02
160	GO:0007017: microtubule-based process	3.20E-02
161	GO:0048511: rhythmic process	3.42E-02
162	GO:0009269: response to desiccation	3.42E-02
163	GO:0006364: rRNA processing	3.53E-02
164	GO:0009585: red, far-red light phototransduction	3.53E-02
165	GO:0019748: secondary metabolic process	3.65E-02
166	GO:0010017: red or far-red light signaling pathway	3.65E-02
167	GO:0009814: defense response, incompatible interaction	3.65E-02
168	GO:0035428: hexose transmembrane transport	3.65E-02
169	GO:0009826: unidimensional cell growth	3.76E-02
170	GO:0006012: galactose metabolic process	3.88E-02
171	GO:0009411: response to UV	3.88E-02
172	GO:0006284: base-excision repair	4.12E-02
173	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.36E-02
174	GO:0055114: oxidation-reduction process	4.56E-02
175	GO:0010087: phloem or xylem histogenesis	4.61E-02
176	GO:0080022: primary root development	4.61E-02
177	GO:0046323: glucose import	4.86E-02
178	GO:0009958: positive gravitropism	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
6	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
7	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
10	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
11	GO:0019843: rRNA binding	2.20E-18
12	GO:0003735: structural constituent of ribosome	6.07E-11
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.74E-09
14	GO:0005528: FK506 binding	2.03E-08
15	GO:0016168: chlorophyll binding	7.35E-08
16	GO:0031409: pigment binding	6.38E-07
17	GO:0008266: poly(U) RNA binding	1.22E-05
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.28E-05
19	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.28E-05
20	GO:0051920: peroxiredoxin activity	1.46E-05
21	GO:0016209: antioxidant activity	3.37E-05
22	GO:0016851: magnesium chelatase activity	9.12E-05
23	GO:0001053: plastid sigma factor activity	1.57E-04
24	GO:0016987: sigma factor activity	1.57E-04
25	GO:0004089: carbonate dehydratase activity	1.98E-04
26	GO:0004130: cytochrome-c peroxidase activity	3.38E-04
27	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.50E-04
28	GO:0004333: fumarate hydratase activity	5.40E-04
29	GO:0046906: tetrapyrrole binding	5.40E-04
30	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	5.40E-04
31	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	5.40E-04
32	GO:0009671: nitrate:proton symporter activity	5.40E-04
33	GO:0004853: uroporphyrinogen decarboxylase activity	5.40E-04
34	GO:0019899: enzyme binding	5.77E-04
35	GO:0003727: single-stranded RNA binding	6.70E-04
36	GO:0017118: lipoyltransferase activity	1.16E-03
37	GO:0047746: chlorophyllase activity	1.16E-03
38	GO:0042389: omega-3 fatty acid desaturase activity	1.16E-03
39	GO:0016868: intramolecular transferase activity, phosphotransferases	1.16E-03
40	GO:0010297: heteropolysaccharide binding	1.16E-03
41	GO:0043425: bHLH transcription factor binding	1.16E-03
42	GO:0016415: octanoyltransferase activity	1.16E-03
43	GO:0004047: aminomethyltransferase activity	1.16E-03
44	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	1.16E-03
45	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.16E-03
46	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.16E-03
47	GO:0008967: phosphoglycolate phosphatase activity	1.16E-03
48	GO:0005509: calcium ion binding	1.17E-03
49	GO:0015250: water channel activity	1.88E-03
50	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.91E-03
51	GO:0004324: ferredoxin-NADP+ reductase activity	1.91E-03
52	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.91E-03
53	GO:0050734: hydroxycinnamoyltransferase activity	1.91E-03
54	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.76E-03
55	GO:0046556: alpha-L-arabinofuranosidase activity	3.72E-03
56	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.72E-03
57	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	3.72E-03
58	GO:0009044: xylan 1,4-beta-xylosidase activity	3.72E-03
59	GO:0005253: anion channel activity	3.72E-03
60	GO:0043495: protein anchor	3.72E-03
61	GO:0008725: DNA-3-methyladenine glycosylase activity	4.78E-03
62	GO:0003959: NADPH dehydrogenase activity	4.78E-03
63	GO:0004040: amidase activity	4.78E-03
64	GO:0022891: substrate-specific transmembrane transporter activity	4.93E-03
65	GO:0030570: pectate lyase activity	4.93E-03
66	GO:0004185: serine-type carboxypeptidase activity	4.95E-03
67	GO:0051537: 2 iron, 2 sulfur cluster binding	5.48E-03
68	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	5.92E-03
69	GO:0005247: voltage-gated chloride channel activity	5.92E-03
70	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	5.92E-03
71	GO:0042578: phosphoric ester hydrolase activity	5.92E-03
72	GO:0016688: L-ascorbate peroxidase activity	5.92E-03
73	GO:0004559: alpha-mannosidase activity	7.16E-03
74	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	7.16E-03
75	GO:0004017: adenylate kinase activity	7.16E-03
76	GO:0004602: glutathione peroxidase activity	7.16E-03
77	GO:0050662: coenzyme binding	7.31E-03
78	GO:0045330: aspartyl esterase activity	8.27E-03
79	GO:0004564: beta-fructofuranosidase activity	9.87E-03
80	GO:0004034: aldose 1-epimerase activity	9.87E-03
81	GO:0004033: aldo-keto reductase (NADP) activity	9.87E-03
82	GO:0016791: phosphatase activity	1.02E-02
83	GO:0030599: pectinesterase activity	1.06E-02
84	GO:0004601: peroxidase activity	1.09E-02
85	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.13E-02
86	GO:0015112: nitrate transmembrane transporter activity	1.45E-02
87	GO:0004575: sucrose alpha-glucosidase activity	1.45E-02
88	GO:0005381: iron ion transmembrane transporter activity	1.45E-02
89	GO:0008236: serine-type peptidase activity	1.52E-02
90	GO:0004805: trehalose-phosphatase activity	1.62E-02
91	GO:0004252: serine-type endopeptidase activity	1.74E-02
92	GO:0004222: metalloendopeptidase activity	1.77E-02
93	GO:0008378: galactosyltransferase activity	1.98E-02
94	GO:0046910: pectinesterase inhibitor activity	2.09E-02
95	GO:0003993: acid phosphatase activity	2.12E-02
96	GO:0031072: heat shock protein binding	2.17E-02
97	GO:0050661: NADP binding	2.32E-02
98	GO:0008146: sulfotransferase activity	2.56E-02
99	GO:0004707: MAP kinase activity	3.42E-02
100	GO:0004176: ATP-dependent peptidase activity	3.42E-02
101	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.53E-02
102	GO:0003690: double-stranded DNA binding	3.66E-02
103	GO:0003756: protein disulfide isomerase activity	4.12E-02
104	GO:0004650: polygalacturonase activity	4.58E-02
105	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009575: chromoplast stroma	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0044391: ribosomal subunit	0.00E+00
6	GO:0009507: chloroplast	1.03E-71
7	GO:0009535: chloroplast thylakoid membrane	1.32E-63
8	GO:0009534: chloroplast thylakoid	4.58E-53
9	GO:0009941: chloroplast envelope	7.85E-46
10	GO:0009570: chloroplast stroma	4.19E-44
11	GO:0009579: thylakoid	1.82E-42
12	GO:0009543: chloroplast thylakoid lumen	4.53E-42
13	GO:0031977: thylakoid lumen	5.33E-24
14	GO:0030095: chloroplast photosystem II	1.06E-14
15	GO:0009654: photosystem II oxygen evolving complex	1.26E-13
16	GO:0019898: extrinsic component of membrane	6.44E-12
17	GO:0010287: plastoglobule	1.71E-11
18	GO:0005840: ribosome	1.02E-10
19	GO:0009523: photosystem II	1.11E-08
20	GO:0048046: apoplast	7.30E-08
21	GO:0010319: stromule	9.96E-07
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.63E-06
23	GO:0016020: membrane	2.50E-06
24	GO:0009533: chloroplast stromal thylakoid	2.29E-05
25	GO:0010007: magnesium chelatase complex	4.29E-05
26	GO:0009706: chloroplast inner membrane	8.11E-05
27	GO:0009522: photosystem I	1.11E-04
28	GO:0000311: plastid large ribosomal subunit	1.64E-04
29	GO:0030076: light-harvesting complex	2.76E-04
30	GO:0005618: cell wall	3.48E-04
31	GO:0042651: thylakoid membrane	4.21E-04
32	GO:0015935: small ribosomal subunit	4.78E-04
33	GO:0009547: plastid ribosome	5.40E-04
34	GO:0045239: tricarboxylic acid cycle enzyme complex	5.40E-04
35	GO:0009782: photosystem I antenna complex	5.40E-04
36	GO:0043674: columella	5.40E-04
37	GO:0009783: photosystem II antenna complex	5.40E-04
38	GO:0009515: granal stacked thylakoid	5.40E-04
39	GO:0009538: photosystem I reaction center	7.18E-04
40	GO:0009505: plant-type cell wall	9.50E-04
41	GO:0031969: chloroplast membrane	1.10E-03
42	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.16E-03
43	GO:0042170: plastid membrane	1.16E-03
44	GO:0000312: plastid small ribosomal subunit	2.45E-03
45	GO:0009531: secondary cell wall	2.76E-03
46	GO:0005775: vacuolar lumen	2.76E-03
47	GO:0005960: glycine cleavage complex	2.76E-03
48	GO:0009517: PSII associated light-harvesting complex II	3.72E-03
49	GO:0055035: plastid thylakoid membrane	4.78E-03
50	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	5.92E-03
51	GO:0034707: chloride channel complex	5.92E-03
52	GO:0042807: central vacuole	8.47E-03
53	GO:0009295: nucleoid	1.09E-02
54	GO:0008180: COP9 signalosome	1.29E-02
55	GO:0042644: chloroplast nucleoid	1.29E-02
56	GO:0045298: tubulin complex	1.29E-02
57	GO:0032040: small-subunit processome	1.98E-02
58	GO:0009508: plastid chromosome	2.17E-02
59	GO:0009705: plant-type vacuole membrane	2.29E-02