GO Enrichment Analysis of Co-expressed Genes with
AT1G49010
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 3 | GO:0032544: plastid translation | 6.52E-07 |
| 4 | GO:0016117: carotenoid biosynthetic process | 2.06E-05 |
| 5 | GO:0042254: ribosome biogenesis | 2.09E-05 |
| 6 | GO:0042372: phylloquinone biosynthetic process | 2.87E-05 |
| 7 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 9.33E-05 |
| 8 | GO:0042371: vitamin K biosynthetic process | 9.33E-05 |
| 9 | GO:0006415: translational termination | 1.37E-04 |
| 10 | GO:0045717: negative regulation of fatty acid biosynthetic process | 2.20E-04 |
| 11 | GO:0006954: inflammatory response | 3.67E-04 |
| 12 | GO:0019563: glycerol catabolic process | 3.67E-04 |
| 13 | GO:0032504: multicellular organism reproduction | 3.67E-04 |
| 14 | GO:0006412: translation | 4.52E-04 |
| 15 | GO:0016556: mRNA modification | 5.28E-04 |
| 16 | GO:0006808: regulation of nitrogen utilization | 7.02E-04 |
| 17 | GO:0009765: photosynthesis, light harvesting | 7.02E-04 |
| 18 | GO:0016120: carotene biosynthetic process | 8.88E-04 |
| 19 | GO:0010236: plastoquinone biosynthetic process | 8.88E-04 |
| 20 | GO:0016123: xanthophyll biosynthetic process | 8.88E-04 |
| 21 | GO:0010027: thylakoid membrane organization | 1.01E-03 |
| 22 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.08E-03 |
| 23 | GO:0015995: chlorophyll biosynthetic process | 1.18E-03 |
| 24 | GO:0006458: 'de novo' protein folding | 1.29E-03 |
| 25 | GO:0042026: protein refolding | 1.29E-03 |
| 26 | GO:0006955: immune response | 1.51E-03 |
| 27 | GO:0009395: phospholipid catabolic process | 1.51E-03 |
| 28 | GO:0009772: photosynthetic electron transport in photosystem II | 1.51E-03 |
| 29 | GO:0048564: photosystem I assembly | 1.75E-03 |
| 30 | GO:0009657: plastid organization | 2.00E-03 |
| 31 | GO:0010206: photosystem II repair | 2.25E-03 |
| 32 | GO:0006783: heme biosynthetic process | 2.25E-03 |
| 33 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.25E-03 |
| 34 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.52E-03 |
| 35 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.80E-03 |
| 36 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.91E-03 |
| 37 | GO:0009073: aromatic amino acid family biosynthetic process | 3.09E-03 |
| 38 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.09E-03 |
| 39 | GO:0009773: photosynthetic electron transport in photosystem I | 3.09E-03 |
| 40 | GO:0006096: glycolytic process | 3.32E-03 |
| 41 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.38E-03 |
| 42 | GO:0010628: positive regulation of gene expression | 3.69E-03 |
| 43 | GO:0006006: glucose metabolic process | 3.69E-03 |
| 44 | GO:0006094: gluconeogenesis | 3.69E-03 |
| 45 | GO:0019253: reductive pentose-phosphate cycle | 4.01E-03 |
| 46 | GO:0048768: root hair cell tip growth | 4.01E-03 |
| 47 | GO:0090351: seedling development | 4.33E-03 |
| 48 | GO:0000027: ribosomal large subunit assembly | 5.01E-03 |
| 49 | GO:0016998: cell wall macromolecule catabolic process | 5.72E-03 |
| 50 | GO:0061077: chaperone-mediated protein folding | 5.72E-03 |
| 51 | GO:0006730: one-carbon metabolic process | 6.09E-03 |
| 52 | GO:0016226: iron-sulfur cluster assembly | 6.09E-03 |
| 53 | GO:0009306: protein secretion | 6.85E-03 |
| 54 | GO:0042335: cuticle development | 7.65E-03 |
| 55 | GO:0080022: primary root development | 7.65E-03 |
| 56 | GO:0006814: sodium ion transport | 8.47E-03 |
| 57 | GO:0071554: cell wall organization or biogenesis | 9.33E-03 |
| 58 | GO:0007264: small GTPase mediated signal transduction | 9.78E-03 |
| 59 | GO:0009658: chloroplast organization | 1.07E-02 |
| 60 | GO:0009627: systemic acquired resistance | 1.31E-02 |
| 61 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.37E-02 |
| 62 | GO:0016311: dephosphorylation | 1.41E-02 |
| 63 | GO:0015979: photosynthesis | 1.51E-02 |
| 64 | GO:0009853: photorespiration | 1.73E-02 |
| 65 | GO:0006839: mitochondrial transport | 1.89E-02 |
| 66 | GO:0016042: lipid catabolic process | 1.90E-02 |
| 67 | GO:0051707: response to other organism | 2.07E-02 |
| 68 | GO:0006508: proteolysis | 2.20E-02 |
| 69 | GO:0055114: oxidation-reduction process | 2.87E-02 |
| 70 | GO:0006396: RNA processing | 3.35E-02 |
| 71 | GO:0009742: brassinosteroid mediated signaling pathway | 3.42E-02 |
| 72 | GO:0006633: fatty acid biosynthetic process | 4.53E-02 |
| 73 | GO:0040008: regulation of growth | 4.69E-02 |
| 74 | GO:0007623: circadian rhythm | 4.84E-02 |
| 75 | GO:0009451: RNA modification | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 3 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 4 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 5 | GO:0019843: rRNA binding | 2.85E-09 |
| 6 | GO:0016149: translation release factor activity, codon specific | 4.19E-06 |
| 7 | GO:0003735: structural constituent of ribosome | 2.83E-05 |
| 8 | GO:0003747: translation release factor activity | 8.01E-05 |
| 9 | GO:0009374: biotin binding | 9.33E-05 |
| 10 | GO:0004328: formamidase activity | 9.33E-05 |
| 11 | GO:0004807: triose-phosphate isomerase activity | 9.33E-05 |
| 12 | GO:0042834: peptidoglycan binding | 9.33E-05 |
| 13 | GO:0008883: glutamyl-tRNA reductase activity | 2.20E-04 |
| 14 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.20E-04 |
| 15 | GO:0017150: tRNA dihydrouridine synthase activity | 3.67E-04 |
| 16 | GO:0016851: magnesium chelatase activity | 5.28E-04 |
| 17 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 5.28E-04 |
| 18 | GO:0008097: 5S rRNA binding | 5.28E-04 |
| 19 | GO:0008508: bile acid:sodium symporter activity | 5.28E-04 |
| 20 | GO:0001872: (1->3)-beta-D-glucan binding | 5.28E-04 |
| 21 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 5.28E-04 |
| 22 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 6.48E-04 |
| 23 | GO:0004659: prenyltransferase activity | 7.02E-04 |
| 24 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 7.02E-04 |
| 25 | GO:0052793: pectin acetylesterase activity | 7.02E-04 |
| 26 | GO:0003989: acetyl-CoA carboxylase activity | 8.88E-04 |
| 27 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.08E-03 |
| 28 | GO:0016208: AMP binding | 1.08E-03 |
| 29 | GO:0008236: serine-type peptidase activity | 1.24E-03 |
| 30 | GO:0051920: peroxiredoxin activity | 1.29E-03 |
| 31 | GO:0016788: hydrolase activity, acting on ester bonds | 1.64E-03 |
| 32 | GO:0003993: acid phosphatase activity | 1.71E-03 |
| 33 | GO:0016209: antioxidant activity | 1.75E-03 |
| 34 | GO:0050661: NADP binding | 1.86E-03 |
| 35 | GO:0004185: serine-type carboxypeptidase activity | 2.10E-03 |
| 36 | GO:0052689: carboxylic ester hydrolase activity | 2.39E-03 |
| 37 | GO:0044183: protein binding involved in protein folding | 3.09E-03 |
| 38 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 4.01E-03 |
| 39 | GO:0051536: iron-sulfur cluster binding | 5.01E-03 |
| 40 | GO:0008080: N-acetyltransferase activity | 8.06E-03 |
| 41 | GO:0019825: oxygen binding | 1.12E-02 |
| 42 | GO:0016413: O-acetyltransferase activity | 1.16E-02 |
| 43 | GO:0004497: monooxygenase activity | 1.32E-02 |
| 44 | GO:0030247: polysaccharide binding | 1.36E-02 |
| 45 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.46E-02 |
| 46 | GO:0004519: endonuclease activity | 2.13E-02 |
| 47 | GO:0003690: double-stranded DNA binding | 2.62E-02 |
| 48 | GO:0020037: heme binding | 3.09E-02 |
| 49 | GO:0051082: unfolded protein binding | 3.28E-02 |
| 50 | GO:0008026: ATP-dependent helicase activity | 3.42E-02 |
| 51 | GO:0004252: serine-type endopeptidase activity | 4.15E-02 |
| 52 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 9.73E-23 |
| 2 | GO:0009570: chloroplast stroma | 1.07E-13 |
| 3 | GO:0009941: chloroplast envelope | 1.75E-11 |
| 4 | GO:0005840: ribosome | 2.94E-05 |
| 5 | GO:0031969: chloroplast membrane | 3.31E-05 |
| 6 | GO:0009579: thylakoid | 5.09E-05 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 5.88E-05 |
| 8 | GO:0046658: anchored component of plasma membrane | 1.74E-04 |
| 9 | GO:0031977: thylakoid lumen | 1.78E-04 |
| 10 | GO:0009317: acetyl-CoA carboxylase complex | 3.67E-04 |
| 11 | GO:0010007: magnesium chelatase complex | 3.67E-04 |
| 12 | GO:0009536: plastid | 1.28E-03 |
| 13 | GO:0015934: large ribosomal subunit | 1.50E-03 |
| 14 | GO:0031225: anchored component of membrane | 2.72E-03 |
| 15 | GO:0000311: plastid large ribosomal subunit | 3.38E-03 |
| 16 | GO:0009508: plastid chromosome | 3.69E-03 |
| 17 | GO:0009535: chloroplast thylakoid membrane | 3.69E-03 |
| 18 | GO:0000312: plastid small ribosomal subunit | 4.01E-03 |
| 19 | GO:0030095: chloroplast photosystem II | 4.01E-03 |
| 20 | GO:0043234: protein complex | 4.67E-03 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 5.36E-03 |
| 22 | GO:0022626: cytosolic ribosome | 6.74E-03 |
| 23 | GO:0019898: extrinsic component of membrane | 8.90E-03 |
| 24 | GO:0005778: peroxisomal membrane | 1.11E-02 |
| 25 | GO:0009295: nucleoid | 1.11E-02 |
| 26 | GO:0043231: intracellular membrane-bounded organelle | 2.16E-02 |
| 27 | GO:0009505: plant-type cell wall | 2.32E-02 |
| 28 | GO:0009534: chloroplast thylakoid | 4.18E-02 |
| 29 | GO:0005759: mitochondrial matrix | 4.53E-02 |