GO Enrichment Analysis of Co-expressed Genes with
AT1G48480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 3 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 7 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 1.31E-09 |
| 9 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.58E-05 |
| 10 | GO:0042254: ribosome biogenesis | 4.67E-05 |
| 11 | GO:0006833: water transport | 5.58E-05 |
| 12 | GO:0042549: photosystem II stabilization | 9.17E-05 |
| 13 | GO:0015979: photosynthesis | 1.06E-04 |
| 14 | GO:0010019: chloroplast-nucleus signaling pathway | 1.27E-04 |
| 15 | GO:0034220: ion transmembrane transport | 1.65E-04 |
| 16 | GO:0046520: sphingoid biosynthetic process | 2.36E-04 |
| 17 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.36E-04 |
| 18 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.36E-04 |
| 19 | GO:0006783: heme biosynthetic process | 3.18E-04 |
| 20 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.78E-04 |
| 21 | GO:0010027: thylakoid membrane organization | 4.04E-04 |
| 22 | GO:0080151: positive regulation of salicylic acid mediated signaling pathway | 5.24E-04 |
| 23 | GO:0006521: regulation of cellular amino acid metabolic process | 5.24E-04 |
| 24 | GO:0006412: translation | 5.71E-04 |
| 25 | GO:0015706: nitrate transport | 5.84E-04 |
| 26 | GO:0010207: photosystem II assembly | 7.46E-04 |
| 27 | GO:0010167: response to nitrate | 8.34E-04 |
| 28 | GO:0006013: mannose metabolic process | 8.52E-04 |
| 29 | GO:0015840: urea transport | 8.52E-04 |
| 30 | GO:0071705: nitrogen compound transport | 8.52E-04 |
| 31 | GO:0010114: response to red light | 1.05E-03 |
| 32 | GO:0080170: hydrogen peroxide transmembrane transport | 1.21E-03 |
| 33 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.21E-03 |
| 34 | GO:0009800: cinnamic acid biosynthetic process | 1.21E-03 |
| 35 | GO:2001141: regulation of RNA biosynthetic process | 1.21E-03 |
| 36 | GO:1902476: chloride transmembrane transport | 1.21E-03 |
| 37 | GO:0051513: regulation of monopolar cell growth | 1.21E-03 |
| 38 | GO:2000122: negative regulation of stomatal complex development | 1.62E-03 |
| 39 | GO:0030104: water homeostasis | 1.62E-03 |
| 40 | GO:0010037: response to carbon dioxide | 1.62E-03 |
| 41 | GO:0015976: carbon utilization | 1.62E-03 |
| 42 | GO:0071249: cellular response to nitrate | 1.62E-03 |
| 43 | GO:0009658: chloroplast organization | 1.67E-03 |
| 44 | GO:0000413: protein peptidyl-prolyl isomerization | 1.86E-03 |
| 45 | GO:0009247: glycolipid biosynthetic process | 2.07E-03 |
| 46 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.07E-03 |
| 47 | GO:0009735: response to cytokinin | 2.20E-03 |
| 48 | GO:0080167: response to karrikin | 2.32E-03 |
| 49 | GO:0000302: response to reactive oxygen species | 2.47E-03 |
| 50 | GO:0016132: brassinosteroid biosynthetic process | 2.47E-03 |
| 51 | GO:0006559: L-phenylalanine catabolic process | 2.55E-03 |
| 52 | GO:0032973: amino acid export | 2.55E-03 |
| 53 | GO:1902456: regulation of stomatal opening | 2.55E-03 |
| 54 | GO:0042372: phylloquinone biosynthetic process | 3.06E-03 |
| 55 | GO:0006694: steroid biosynthetic process | 3.06E-03 |
| 56 | GO:0009854: oxidative photosynthetic carbon pathway | 3.06E-03 |
| 57 | GO:0006821: chloride transport | 3.61E-03 |
| 58 | GO:0050829: defense response to Gram-negative bacterium | 3.61E-03 |
| 59 | GO:0010444: guard mother cell differentiation | 3.61E-03 |
| 60 | GO:0009610: response to symbiotic fungus | 3.61E-03 |
| 61 | GO:0043090: amino acid import | 3.61E-03 |
| 62 | GO:0030497: fatty acid elongation | 3.61E-03 |
| 63 | GO:0006402: mRNA catabolic process | 4.19E-03 |
| 64 | GO:0046620: regulation of organ growth | 4.19E-03 |
| 65 | GO:0043068: positive regulation of programmed cell death | 4.19E-03 |
| 66 | GO:0006605: protein targeting | 4.19E-03 |
| 67 | GO:0019375: galactolipid biosynthetic process | 4.19E-03 |
| 68 | GO:0018298: protein-chromophore linkage | 4.64E-03 |
| 69 | GO:0007623: circadian rhythm | 4.76E-03 |
| 70 | GO:0045490: pectin catabolic process | 4.76E-03 |
| 71 | GO:0009657: plastid organization | 4.79E-03 |
| 72 | GO:0009808: lignin metabolic process | 4.79E-03 |
| 73 | GO:0009699: phenylpropanoid biosynthetic process | 4.79E-03 |
| 74 | GO:0009932: cell tip growth | 4.79E-03 |
| 75 | GO:0071482: cellular response to light stimulus | 4.79E-03 |
| 76 | GO:0010206: photosystem II repair | 5.43E-03 |
| 77 | GO:0080144: amino acid homeostasis | 5.43E-03 |
| 78 | GO:0000373: Group II intron splicing | 5.43E-03 |
| 79 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.43E-03 |
| 80 | GO:0006810: transport | 5.55E-03 |
| 81 | GO:0055114: oxidation-reduction process | 5.77E-03 |
| 82 | GO:0009637: response to blue light | 5.87E-03 |
| 83 | GO:0010205: photoinhibition | 6.09E-03 |
| 84 | GO:0034599: cellular response to oxidative stress | 6.14E-03 |
| 85 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 6.78E-03 |
| 86 | GO:0006535: cysteine biosynthetic process from serine | 6.78E-03 |
| 87 | GO:0006949: syncytium formation | 6.78E-03 |
| 88 | GO:0009698: phenylpropanoid metabolic process | 7.50E-03 |
| 89 | GO:0009773: photosynthetic electron transport in photosystem I | 7.50E-03 |
| 90 | GO:0043085: positive regulation of catalytic activity | 7.50E-03 |
| 91 | GO:0006352: DNA-templated transcription, initiation | 7.50E-03 |
| 92 | GO:0009750: response to fructose | 7.50E-03 |
| 93 | GO:0010015: root morphogenesis | 7.50E-03 |
| 94 | GO:0000038: very long-chain fatty acid metabolic process | 7.50E-03 |
| 95 | GO:0009826: unidimensional cell growth | 7.91E-03 |
| 96 | GO:0006006: glucose metabolic process | 9.02E-03 |
| 97 | GO:2000028: regulation of photoperiodism, flowering | 9.02E-03 |
| 98 | GO:0050826: response to freezing | 9.02E-03 |
| 99 | GO:0009725: response to hormone | 9.02E-03 |
| 100 | GO:0010143: cutin biosynthetic process | 9.82E-03 |
| 101 | GO:0010030: positive regulation of seed germination | 1.06E-02 |
| 102 | GO:0006417: regulation of translation | 1.13E-02 |
| 103 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.14E-02 |
| 104 | GO:0010025: wax biosynthetic process | 1.15E-02 |
| 105 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.15E-02 |
| 106 | GO:0019762: glucosinolate catabolic process | 1.15E-02 |
| 107 | GO:0000027: ribosomal large subunit assembly | 1.24E-02 |
| 108 | GO:0005992: trehalose biosynthetic process | 1.24E-02 |
| 109 | GO:0019344: cysteine biosynthetic process | 1.24E-02 |
| 110 | GO:0009626: plant-type hypersensitive response | 1.29E-02 |
| 111 | GO:0006418: tRNA aminoacylation for protein translation | 1.32E-02 |
| 112 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.32E-02 |
| 113 | GO:0009740: gibberellic acid mediated signaling pathway | 1.37E-02 |
| 114 | GO:0045454: cell redox homeostasis | 1.37E-02 |
| 115 | GO:0031408: oxylipin biosynthetic process | 1.42E-02 |
| 116 | GO:0042545: cell wall modification | 1.42E-02 |
| 117 | GO:0048511: rhythmic process | 1.42E-02 |
| 118 | GO:0061077: chaperone-mediated protein folding | 1.42E-02 |
| 119 | GO:0055085: transmembrane transport | 1.44E-02 |
| 120 | GO:0006457: protein folding | 1.48E-02 |
| 121 | GO:0009814: defense response, incompatible interaction | 1.51E-02 |
| 122 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.61E-02 |
| 123 | GO:0006284: base-excision repair | 1.70E-02 |
| 124 | GO:0009306: protein secretion | 1.70E-02 |
| 125 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.80E-02 |
| 126 | GO:0042335: cuticle development | 1.91E-02 |
| 127 | GO:0010087: phloem or xylem histogenesis | 1.91E-02 |
| 128 | GO:0042631: cellular response to water deprivation | 1.91E-02 |
| 129 | GO:0010305: leaf vascular tissue pattern formation | 2.01E-02 |
| 130 | GO:0042744: hydrogen peroxide catabolic process | 2.08E-02 |
| 131 | GO:0042752: regulation of circadian rhythm | 2.12E-02 |
| 132 | GO:0009790: embryo development | 2.14E-02 |
| 133 | GO:0009749: response to glucose | 2.23E-02 |
| 134 | GO:0002229: defense response to oomycetes | 2.34E-02 |
| 135 | GO:0010583: response to cyclopentenone | 2.45E-02 |
| 136 | GO:0009630: gravitropism | 2.45E-02 |
| 137 | GO:0009828: plant-type cell wall loosening | 2.68E-02 |
| 138 | GO:0009567: double fertilization forming a zygote and endosperm | 2.68E-02 |
| 139 | GO:0009739: response to gibberellin | 2.83E-02 |
| 140 | GO:0016126: sterol biosynthetic process | 3.04E-02 |
| 141 | GO:0009627: systemic acquired resistance | 3.29E-02 |
| 142 | GO:0042128: nitrate assimilation | 3.29E-02 |
| 143 | GO:0010411: xyloglucan metabolic process | 3.41E-02 |
| 144 | GO:0016311: dephosphorylation | 3.54E-02 |
| 145 | GO:0048481: plant ovule development | 3.67E-02 |
| 146 | GO:0009416: response to light stimulus | 3.67E-02 |
| 147 | GO:0000160: phosphorelay signal transduction system | 3.80E-02 |
| 148 | GO:0009407: toxin catabolic process | 3.93E-02 |
| 149 | GO:0010218: response to far red light | 3.93E-02 |
| 150 | GO:0009834: plant-type secondary cell wall biogenesis | 3.93E-02 |
| 151 | GO:0010119: regulation of stomatal movement | 4.07E-02 |
| 152 | GO:0009631: cold acclimation | 4.07E-02 |
| 153 | GO:0009853: photorespiration | 4.34E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 3 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 4 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 5 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 6 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 7 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 8 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 3.03E-07 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.02E-07 |
| 11 | GO:0003735: structural constituent of ribosome | 1.74E-05 |
| 12 | GO:0015250: water channel activity | 2.97E-05 |
| 13 | GO:0005528: FK506 binding | 6.57E-05 |
| 14 | GO:0004130: cytochrome-c peroxidase activity | 9.17E-05 |
| 15 | GO:0004655: porphobilinogen synthase activity | 2.36E-04 |
| 16 | GO:0009671: nitrate:proton symporter activity | 2.36E-04 |
| 17 | GO:0004853: uroporphyrinogen decarboxylase activity | 2.36E-04 |
| 18 | GO:0015200: methylammonium transmembrane transporter activity | 2.36E-04 |
| 19 | GO:0000248: C-5 sterol desaturase activity | 2.36E-04 |
| 20 | GO:0000170: sphingosine hydroxylase activity | 2.36E-04 |
| 21 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 2.36E-04 |
| 22 | GO:0046906: tetrapyrrole binding | 2.36E-04 |
| 23 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 5.24E-04 |
| 24 | GO:0042284: sphingolipid delta-4 desaturase activity | 5.24E-04 |
| 25 | GO:0008967: phosphoglycolate phosphatase activity | 5.24E-04 |
| 26 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 5.24E-04 |
| 27 | GO:0050734: hydroxycinnamoyltransferase activity | 8.52E-04 |
| 28 | GO:0045548: phenylalanine ammonia-lyase activity | 8.52E-04 |
| 29 | GO:0002161: aminoacyl-tRNA editing activity | 8.52E-04 |
| 30 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 8.52E-04 |
| 31 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.16E-03 |
| 32 | GO:0035250: UDP-galactosyltransferase activity | 1.21E-03 |
| 33 | GO:0016851: magnesium chelatase activity | 1.21E-03 |
| 34 | GO:0005253: anion channel activity | 1.62E-03 |
| 35 | GO:0015204: urea transmembrane transporter activity | 1.62E-03 |
| 36 | GO:0001053: plastid sigma factor activity | 1.62E-03 |
| 37 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.62E-03 |
| 38 | GO:0016987: sigma factor activity | 1.62E-03 |
| 39 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.07E-03 |
| 40 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.07E-03 |
| 41 | GO:0009922: fatty acid elongase activity | 2.07E-03 |
| 42 | GO:0016208: AMP binding | 2.55E-03 |
| 43 | GO:0016688: L-ascorbate peroxidase activity | 2.55E-03 |
| 44 | GO:0008519: ammonium transmembrane transporter activity | 2.55E-03 |
| 45 | GO:0005247: voltage-gated chloride channel activity | 2.55E-03 |
| 46 | GO:0004017: adenylate kinase activity | 3.06E-03 |
| 47 | GO:0004559: alpha-mannosidase activity | 3.06E-03 |
| 48 | GO:0004124: cysteine synthase activity | 3.06E-03 |
| 49 | GO:0051920: peroxiredoxin activity | 3.06E-03 |
| 50 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.17E-03 |
| 51 | GO:0016597: amino acid binding | 3.36E-03 |
| 52 | GO:0019899: enzyme binding | 3.61E-03 |
| 53 | GO:0016168: chlorophyll binding | 3.76E-03 |
| 54 | GO:0016209: antioxidant activity | 4.19E-03 |
| 55 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.79E-03 |
| 56 | GO:0015112: nitrate transmembrane transporter activity | 6.09E-03 |
| 57 | GO:0003993: acid phosphatase activity | 6.14E-03 |
| 58 | GO:0004805: trehalose-phosphatase activity | 6.78E-03 |
| 59 | GO:0000049: tRNA binding | 8.25E-03 |
| 60 | GO:0016788: hydrolase activity, acting on ester bonds | 8.50E-03 |
| 61 | GO:0004089: carbonate dehydratase activity | 9.02E-03 |
| 62 | GO:0031072: heat shock protein binding | 9.02E-03 |
| 63 | GO:0045330: aspartyl esterase activity | 1.13E-02 |
| 64 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.15E-02 |
| 65 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.15E-02 |
| 66 | GO:0031409: pigment binding | 1.15E-02 |
| 67 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.15E-02 |
| 68 | GO:0004650: polygalacturonase activity | 1.33E-02 |
| 69 | GO:0030599: pectinesterase activity | 1.37E-02 |
| 70 | GO:0030570: pectate lyase activity | 1.61E-02 |
| 71 | GO:0022891: substrate-specific transmembrane transporter activity | 1.61E-02 |
| 72 | GO:0003756: protein disulfide isomerase activity | 1.70E-02 |
| 73 | GO:0003727: single-stranded RNA binding | 1.70E-02 |
| 74 | GO:0004812: aminoacyl-tRNA ligase activity | 1.80E-02 |
| 75 | GO:0010181: FMN binding | 2.12E-02 |
| 76 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.34E-02 |
| 77 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.36E-02 |
| 78 | GO:0000156: phosphorelay response regulator activity | 2.56E-02 |
| 79 | GO:0016759: cellulose synthase activity | 2.68E-02 |
| 80 | GO:0102483: scopolin beta-glucosidase activity | 3.41E-02 |
| 81 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.41E-02 |
| 82 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.67E-02 |
| 83 | GO:0004601: peroxidase activity | 3.90E-02 |
| 84 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.07E-02 |
| 85 | GO:0016491: oxidoreductase activity | 4.28E-02 |
| 86 | GO:0008422: beta-glucosidase activity | 4.62E-02 |
| 87 | GO:0050661: NADP binding | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 8.74E-25 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 8.70E-16 |
| 5 | GO:0009534: chloroplast thylakoid | 9.25E-14 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 5.75E-13 |
| 7 | GO:0009570: chloroplast stroma | 2.80E-11 |
| 8 | GO:0009941: chloroplast envelope | 9.01E-11 |
| 9 | GO:0031977: thylakoid lumen | 9.14E-09 |
| 10 | GO:0009579: thylakoid | 5.75E-07 |
| 11 | GO:0009505: plant-type cell wall | 2.17E-06 |
| 12 | GO:0005618: cell wall | 6.67E-05 |
| 13 | GO:0031969: chloroplast membrane | 7.66E-05 |
| 14 | GO:0042807: central vacuole | 1.67E-04 |
| 15 | GO:0005840: ribosome | 2.18E-04 |
| 16 | GO:0043674: columella | 2.36E-04 |
| 17 | GO:0009706: chloroplast inner membrane | 3.73E-04 |
| 18 | GO:0031225: anchored component of membrane | 4.14E-04 |
| 19 | GO:0048046: apoplast | 5.69E-04 |
| 20 | GO:0010007: magnesium chelatase complex | 8.52E-04 |
| 21 | GO:0009509: chromoplast | 8.52E-04 |
| 22 | GO:0042646: plastid nucleoid | 1.21E-03 |
| 23 | GO:0046658: anchored component of plasma membrane | 1.32E-03 |
| 24 | GO:0009523: photosystem II | 2.31E-03 |
| 25 | GO:0034707: chloride channel complex | 2.55E-03 |
| 26 | GO:0016363: nuclear matrix | 3.06E-03 |
| 27 | GO:0030529: intracellular ribonucleoprotein complex | 3.56E-03 |
| 28 | GO:0009533: chloroplast stromal thylakoid | 3.61E-03 |
| 29 | GO:0005576: extracellular region | 3.76E-03 |
| 30 | GO:0005774: vacuolar membrane | 4.04E-03 |
| 31 | GO:0009538: photosystem I reaction center | 4.19E-03 |
| 32 | GO:0009705: plant-type vacuole membrane | 4.76E-03 |
| 33 | GO:0000326: protein storage vacuole | 4.79E-03 |
| 34 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.43E-03 |
| 35 | GO:0008180: COP9 signalosome | 5.43E-03 |
| 36 | GO:0016020: membrane | 5.64E-03 |
| 37 | GO:0005887: integral component of plasma membrane | 6.67E-03 |
| 38 | GO:0000311: plastid large ribosomal subunit | 8.25E-03 |
| 39 | GO:0000312: plastid small ribosomal subunit | 9.82E-03 |
| 40 | GO:0030095: chloroplast photosystem II | 9.82E-03 |
| 41 | GO:0030076: light-harvesting complex | 1.06E-02 |
| 42 | GO:0005773: vacuole | 1.09E-02 |
| 43 | GO:0042651: thylakoid membrane | 1.32E-02 |
| 44 | GO:0009654: photosystem II oxygen evolving complex | 1.32E-02 |
| 45 | GO:0015935: small ribosomal subunit | 1.42E-02 |
| 46 | GO:0010287: plastoglobule | 1.73E-02 |
| 47 | GO:0009506: plasmodesma | 1.88E-02 |
| 48 | GO:0009522: photosystem I | 2.12E-02 |
| 49 | GO:0019898: extrinsic component of membrane | 2.23E-02 |
| 50 | GO:0071944: cell periphery | 2.56E-02 |
| 51 | GO:0009295: nucleoid | 2.80E-02 |
| 52 | GO:0005778: peroxisomal membrane | 2.80E-02 |
| 53 | GO:0019005: SCF ubiquitin ligase complex | 3.67E-02 |
| 54 | GO:0015934: large ribosomal subunit | 4.07E-02 |