co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G48030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
6	GO:0090627: plant epidermal cell differentiation	0.00E+00
7	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
8	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
9	GO:0071482: cellular response to light stimulus	5.59E-06
10	GO:0006000: fructose metabolic process	8.63E-06
11	GO:0009773: photosynthetic electron transport in photosystem I	1.81E-05
12	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.97E-05
13	GO:0006094: gluconeogenesis	2.84E-05
14	GO:1902183: regulation of shoot apical meristem development	5.76E-05
15	GO:0010158: abaxial cell fate specification	5.76E-05
16	GO:0042549: photosystem II stabilization	8.46E-05
17	GO:0043609: regulation of carbon utilization	2.25E-04
18	GO:0010028: xanthophyll cycle	2.25E-04
19	GO:0034337: RNA folding	2.25E-04
20	GO:0010450: inflorescence meristem growth	2.25E-04
21	GO:0015969: guanosine tetraphosphate metabolic process	2.25E-04
22	GO:0019646: aerobic electron transport chain	2.25E-04
23	GO:0051775: response to redox state	2.25E-04
24	GO:0010480: microsporocyte differentiation	2.25E-04
25	GO:0031338: regulation of vesicle fusion	2.25E-04
26	GO:0000481: maturation of 5S rRNA	2.25E-04
27	GO:0006002: fructose 6-phosphate metabolic process	2.44E-04
28	GO:0048507: meristem development	2.95E-04
29	GO:2000024: regulation of leaf development	2.95E-04
30	GO:0010205: photoinhibition	3.51E-04
31	GO:0016122: xanthophyll metabolic process	5.00E-04
32	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.00E-04
33	GO:0010270: photosystem II oxygen evolving complex assembly	5.00E-04
34	GO:0035304: regulation of protein dephosphorylation	5.00E-04
35	GO:0097054: L-glutamate biosynthetic process	5.00E-04
36	GO:0005983: starch catabolic process	5.45E-04
37	GO:0010207: photosystem II assembly	6.96E-04
38	GO:0009853: photorespiration	6.99E-04
39	GO:0090630: activation of GTPase activity	8.13E-04
40	GO:0045165: cell fate commitment	8.13E-04
41	GO:0006518: peptide metabolic process	8.13E-04
42	GO:0043617: cellular response to sucrose starvation	8.13E-04
43	GO:0009944: polarity specification of adaxial/abaxial axis	9.55E-04
44	GO:0008152: metabolic process	9.86E-04
45	GO:0009067: aspartate family amino acid biosynthetic process	1.16E-03
46	GO:0071484: cellular response to light intensity	1.16E-03
47	GO:0006107: oxaloacetate metabolic process	1.16E-03
48	GO:0006537: glutamate biosynthetic process	1.16E-03
49	GO:0080092: regulation of pollen tube growth	1.25E-03
50	GO:0006364: rRNA processing	1.39E-03
51	GO:0019676: ammonia assimilation cycle	1.54E-03
52	GO:0051781: positive regulation of cell division	1.54E-03
53	GO:0045727: positive regulation of translation	1.54E-03
54	GO:0015994: chlorophyll metabolic process	1.54E-03
55	GO:0006734: NADH metabolic process	1.54E-03
56	GO:0010154: fruit development	1.87E-03
57	GO:0016120: carotene biosynthetic process	1.97E-03
58	GO:0006656: phosphatidylcholine biosynthetic process	1.97E-03
59	GO:0010117: photoprotection	1.97E-03
60	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.43E-03
61	GO:0010256: endomembrane system organization	2.43E-03
62	GO:0000470: maturation of LSU-rRNA	2.43E-03
63	GO:0006828: manganese ion transport	2.43E-03
64	GO:0009913: epidermal cell differentiation	2.43E-03
65	GO:0000741: karyogamy	2.43E-03
66	GO:0009854: oxidative photosynthetic carbon pathway	2.91E-03
67	GO:0009088: threonine biosynthetic process	2.91E-03
68	GO:0042372: phylloquinone biosynthetic process	2.91E-03
69	GO:0009942: longitudinal axis specification	2.91E-03
70	GO:0048280: vesicle fusion with Golgi apparatus	2.91E-03
71	GO:0016126: sterol biosynthetic process	3.31E-03
72	GO:0009772: photosynthetic electron transport in photosystem II	3.43E-03
73	GO:1900056: negative regulation of leaf senescence	3.43E-03
74	GO:0048437: floral organ development	3.43E-03
75	GO:1900057: positive regulation of leaf senescence	3.43E-03
76	GO:0015995: chlorophyll biosynthetic process	3.89E-03
77	GO:0010492: maintenance of shoot apical meristem identity	3.98E-03
78	GO:0048564: photosystem I assembly	3.98E-03
79	GO:0032508: DNA duplex unwinding	3.98E-03
80	GO:0055114: oxidation-reduction process	4.44E-03
81	GO:0010093: specification of floral organ identity	4.56E-03
82	GO:0009932: cell tip growth	4.56E-03
83	GO:0032544: plastid translation	4.56E-03
84	GO:0006098: pentose-phosphate shunt	5.16E-03
85	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.16E-03
86	GO:0010206: photosystem II repair	5.16E-03
87	GO:0000373: Group II intron splicing	5.16E-03
88	GO:0048589: developmental growth	5.16E-03
89	GO:0006779: porphyrin-containing compound biosynthetic process	5.79E-03
90	GO:0010380: regulation of chlorophyll biosynthetic process	5.79E-03
91	GO:0006896: Golgi to vacuole transport	6.45E-03
92	GO:0006782: protoporphyrinogen IX biosynthetic process	6.45E-03
93	GO:0006535: cysteine biosynthetic process from serine	6.45E-03
94	GO:0009744: response to sucrose	7.04E-03
95	GO:0006816: calcium ion transport	7.13E-03
96	GO:0019684: photosynthesis, light reaction	7.13E-03
97	GO:0009089: lysine biosynthetic process via diaminopimelate	7.13E-03
98	GO:0009750: response to fructose	7.13E-03
99	GO:0048229: gametophyte development	7.13E-03
100	GO:0042254: ribosome biogenesis	7.75E-03
101	GO:0010152: pollen maturation	7.84E-03
102	GO:0018107: peptidyl-threonine phosphorylation	8.57E-03
103	GO:0009718: anthocyanin-containing compound biosynthetic process	8.57E-03
104	GO:0010075: regulation of meristem growth	8.57E-03
105	GO:0009767: photosynthetic electron transport chain	8.57E-03
106	GO:0005986: sucrose biosynthetic process	8.57E-03
107	GO:0010102: lateral root morphogenesis	8.57E-03
108	GO:0006108: malate metabolic process	8.57E-03
109	GO:0009416: response to light stimulus	8.96E-03
110	GO:0009934: regulation of meristem structural organization	9.33E-03
111	GO:0009933: meristem structural organization	9.33E-03
112	GO:0009733: response to auxin	9.54E-03
113	GO:0010053: root epidermal cell differentiation	1.01E-02
114	GO:0042343: indole glucosinolate metabolic process	1.01E-02
115	GO:0006636: unsaturated fatty acid biosynthetic process	1.09E-02
116	GO:0006096: glycolytic process	1.12E-02
117	GO:0019344: cysteine biosynthetic process	1.17E-02
118	GO:0006289: nucleotide-excision repair	1.17E-02
119	GO:0098542: defense response to other organism	1.34E-02
120	GO:0061077: chaperone-mediated protein folding	1.34E-02
121	GO:0018105: peptidyl-serine phosphorylation	1.40E-02
122	GO:0009686: gibberellin biosynthetic process	1.53E-02
123	GO:0032259: methylation	1.55E-02
124	GO:0005975: carbohydrate metabolic process	1.61E-02
125	GO:0048443: stamen development	1.62E-02
126	GO:0042147: retrograde transport, endosome to Golgi	1.71E-02
127	GO:0048653: anther development	1.81E-02
128	GO:0042631: cellular response to water deprivation	1.81E-02
129	GO:0010051: xylem and phloem pattern formation	1.81E-02
130	GO:0010268: brassinosteroid homeostasis	1.91E-02
131	GO:0010305: leaf vascular tissue pattern formation	1.91E-02
132	GO:0010197: polar nucleus fusion	1.91E-02
133	GO:0009646: response to absence of light	2.01E-02
134	GO:0006623: protein targeting to vacuole	2.11E-02
135	GO:0048825: cotyledon development	2.11E-02
136	GO:0016132: brassinosteroid biosynthetic process	2.22E-02
137	GO:0006891: intra-Golgi vesicle-mediated transport	2.22E-02
138	GO:0016032: viral process	2.32E-02
139	GO:0030163: protein catabolic process	2.43E-02
140	GO:0016125: sterol metabolic process	2.54E-02
141	GO:0071805: potassium ion transmembrane transport	2.65E-02
142	GO:0001666: response to hypoxia	2.88E-02
143	GO:0042128: nitrate assimilation	3.12E-02
144	GO:0006888: ER to Golgi vesicle-mediated transport	3.24E-02
145	GO:0016311: dephosphorylation	3.36E-02
146	GO:0009817: defense response to fungus, incompatible interaction	3.48E-02
147	GO:0006499: N-terminal protein myristoylation	3.73E-02
148	GO:0009910: negative regulation of flower development	3.86E-02
149	GO:0009631: cold acclimation	3.86E-02
150	GO:0045893: positive regulation of transcription, DNA-templated	3.97E-02
151	GO:0009723: response to ethylene	4.19E-02
152	GO:0006099: tricarboxylic acid cycle	4.25E-02
153	GO:0006810: transport	4.51E-02
154	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.64E-02
155	GO:0006631: fatty acid metabolic process	4.66E-02
156	GO:0046777: protein autophosphorylation	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0008465: glycerate dehydrogenase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
4	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
7	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
10	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
11	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
12	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
13	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
14	GO:0008266: poly(U) RNA binding	3.47E-05
15	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.60E-05
16	GO:0004506: squalene monooxygenase activity	3.60E-05
17	GO:0005528: FK506 binding	5.88E-05
18	GO:2001070: starch binding	8.46E-05
19	GO:0004332: fructose-bisphosphate aldolase activity	8.46E-05
20	GO:0050308: sugar-phosphatase activity	2.25E-04
21	GO:0010242: oxygen evolving activity	2.25E-04
22	GO:0051777: ent-kaurenoate oxidase activity	2.25E-04
23	GO:0004856: xylulokinase activity	2.25E-04
24	GO:0019203: carbohydrate phosphatase activity	2.25E-04
25	GO:0008746: NAD(P)+ transhydrogenase activity	2.25E-04
26	GO:0016041: glutamate synthase (ferredoxin) activity	2.25E-04
27	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.76E-04
28	GO:0016868: intramolecular transferase activity, phosphotransferases	5.00E-04
29	GO:0005094: Rho GDP-dissociation inhibitor activity	5.00E-04
30	GO:0004312: fatty acid synthase activity	5.00E-04
31	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.00E-04
32	GO:0019172: glyoxalase III activity	5.00E-04
33	GO:0008728: GTP diphosphokinase activity	5.00E-04
34	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.00E-04
35	GO:0050017: L-3-cyanoalanine synthase activity	5.00E-04
36	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.13E-04
37	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	8.13E-04
38	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.13E-04
39	GO:0003954: NADH dehydrogenase activity	9.55E-04
40	GO:0015079: potassium ion transmembrane transporter activity	1.05E-03
41	GO:0016787: hydrolase activity	1.08E-03
42	GO:0004072: aspartate kinase activity	1.16E-03
43	GO:0019201: nucleotide kinase activity	1.16E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.16E-03
45	GO:0010011: auxin binding	1.54E-03
46	GO:0008453: alanine-glyoxylate transaminase activity	1.54E-03
47	GO:0070628: proteasome binding	1.54E-03
48	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.97E-03
49	GO:0017137: Rab GTPase binding	1.97E-03
50	GO:0051538: 3 iron, 4 sulfur cluster binding	1.97E-03
51	GO:0048038: quinone binding	2.30E-03
52	GO:0031593: polyubiquitin binding	2.43E-03
53	GO:0042578: phosphoric ester hydrolase activity	2.43E-03
54	GO:0004462: lactoylglutathione lyase activity	2.43E-03
55	GO:0016615: malate dehydrogenase activity	2.43E-03
56	GO:0004124: cysteine synthase activity	2.91E-03
57	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.91E-03
58	GO:0030060: L-malate dehydrogenase activity	2.91E-03
59	GO:0004017: adenylate kinase activity	2.91E-03
60	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.91E-03
61	GO:0043022: ribosome binding	3.98E-03
62	GO:0005096: GTPase activator activity	4.53E-03
63	GO:0004222: metalloendopeptidase activity	4.75E-03
64	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.16E-03
65	GO:0005384: manganese ion transmembrane transporter activity	5.79E-03
66	GO:0042802: identical protein binding	5.89E-03
67	GO:0015386: potassium:proton antiporter activity	7.13E-03
68	GO:0015095: magnesium ion transmembrane transporter activity	8.57E-03
69	GO:0004565: beta-galactosidase activity	8.57E-03
70	GO:0008081: phosphoric diester hydrolase activity	8.57E-03
71	GO:0004022: alcohol dehydrogenase (NAD) activity	8.57E-03
72	GO:0003777: microtubule motor activity	1.05E-02
73	GO:0043130: ubiquitin binding	1.17E-02
74	GO:0016491: oxidoreductase activity	1.26E-02
75	GO:0005515: protein binding	1.27E-02
76	GO:0004176: ATP-dependent peptidase activity	1.34E-02
77	GO:0033612: receptor serine/threonine kinase binding	1.34E-02
78	GO:0019843: rRNA binding	1.70E-02
79	GO:0050662: coenzyme binding	2.01E-02
80	GO:0005509: calcium ion binding	2.29E-02
81	GO:0004518: nuclease activity	2.32E-02
82	GO:0003684: damaged DNA binding	2.54E-02
83	GO:0008483: transaminase activity	2.65E-02
84	GO:0008237: metallopeptidase activity	2.65E-02
85	GO:0003743: translation initiation factor activity	2.75E-02
86	GO:0016597: amino acid binding	2.77E-02
87	GO:0016301: kinase activity	2.85E-02
88	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.99E-02
89	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.12E-02
90	GO:0004683: calmodulin-dependent protein kinase activity	3.24E-02
91	GO:0008168: methyltransferase activity	3.50E-02
92	GO:0015238: drug transmembrane transporter activity	3.61E-02
93	GO:0003746: translation elongation factor activity	4.12E-02
94	GO:0050660: flavin adenine dinucleotide binding	4.19E-02
95	GO:0000149: SNARE binding	4.39E-02
96	GO:0005484: SNAP receptor activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009507: chloroplast	8.57E-23
3	GO:0009534: chloroplast thylakoid	9.19E-13
4	GO:0009535: chloroplast thylakoid membrane	9.17E-11
5	GO:0009570: chloroplast stroma	1.07E-10
6	GO:0009543: chloroplast thylakoid lumen	2.34E-07
7	GO:0009941: chloroplast envelope	8.97E-07
8	GO:0031304: intrinsic component of mitochondrial inner membrane	2.37E-06
9	GO:0009579: thylakoid	4.01E-06
10	GO:0030095: chloroplast photosystem II	3.47E-05
11	GO:0009344: nitrite reductase complex [NAD(P)H]	2.25E-04
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.95E-04
13	GO:0010287: plastoglobule	4.36E-04
14	GO:0031977: thylakoid lumen	8.67E-04
15	GO:0009654: photosystem II oxygen evolving complex	1.05E-03
16	GO:0031969: chloroplast membrane	2.07E-03
17	GO:0019898: extrinsic component of membrane	2.15E-03
18	GO:0012507: ER to Golgi transport vesicle membrane	3.98E-03
19	GO:0008180: COP9 signalosome	5.16E-03
20	GO:0016324: apical plasma membrane	6.45E-03
21	GO:0032040: small-subunit processome	7.84E-03
22	GO:0048046: apoplast	1.04E-02
23	GO:0005777: peroxisome	1.10E-02
24	GO:0042651: thylakoid membrane	1.26E-02
25	GO:0005759: mitochondrial matrix	2.14E-02
26	GO:0030529: intracellular ribonucleoprotein complex	2.88E-02
27	GO:0016021: integral component of membrane	3.22E-02
28	GO:0019005: SCF ubiquitin ligase complex	3.48E-02
29	GO:0031201: SNARE complex	4.66E-02
30	GO:0031902: late endosome membrane	4.66E-02