co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G47740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060416: response to growth hormone	0.00E+00
2	GO:0097164: ammonium ion metabolic process	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:1901698: response to nitrogen compound	0.00E+00
7	GO:0006223: uracil salvage	0.00E+00
8	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
9	GO:0042254: ribosome biogenesis	1.81E-09
10	GO:0006412: translation	1.45E-08
11	GO:0032544: plastid translation	3.09E-07
12	GO:0010027: thylakoid membrane organization	1.08E-04
13	GO:0016123: xanthophyll biosynthetic process	1.36E-04
14	GO:0015995: chlorophyll biosynthetic process	1.45E-04
15	GO:1901259: chloroplast rRNA processing	2.63E-04
16	GO:0042372: phylloquinone biosynthetic process	2.63E-04
17	GO:0010444: guard mother cell differentiation	3.40E-04
18	GO:0046520: sphingoid biosynthetic process	3.78E-04
19	GO:1904966: positive regulation of vitamin E biosynthetic process	3.78E-04
20	GO:1904964: positive regulation of phytol biosynthetic process	3.78E-04
21	GO:0042371: vitamin K biosynthetic process	3.78E-04
22	GO:0043007: maintenance of rDNA	3.78E-04
23	GO:0034337: RNA folding	3.78E-04
24	GO:0071588: hydrogen peroxide mediated signaling pathway	3.78E-04
25	GO:0060627: regulation of vesicle-mediated transport	3.78E-04
26	GO:0006438: valyl-tRNA aminoacylation	3.78E-04
27	GO:0006783: heme biosynthetic process	6.25E-04
28	GO:0010583: response to cyclopentenone	6.55E-04
29	GO:0070981: L-asparagine biosynthetic process	8.22E-04
30	GO:0080148: negative regulation of response to water deprivation	8.22E-04
31	GO:0006529: asparagine biosynthetic process	8.22E-04
32	GO:0006695: cholesterol biosynthetic process	8.22E-04
33	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.22E-04
34	GO:0010115: regulation of abscisic acid biosynthetic process	8.22E-04
35	GO:0006782: protoporphyrinogen IX biosynthetic process	8.60E-04
36	GO:0009658: chloroplast organization	1.10E-03
37	GO:0006954: inflammatory response	1.33E-03
38	GO:0006518: peptide metabolic process	1.33E-03
39	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.33E-03
40	GO:0071705: nitrogen compound transport	1.33E-03
41	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.70E-03
42	GO:0006424: glutamyl-tRNA aminoacylation	1.92E-03
43	GO:0046739: transport of virus in multicellular host	1.92E-03
44	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.92E-03
45	GO:2001141: regulation of RNA biosynthetic process	1.92E-03
46	GO:0015979: photosynthesis	2.03E-03
47	GO:0009735: response to cytokinin	2.14E-03
48	GO:0000919: cell plate assembly	2.58E-03
49	GO:0006021: inositol biosynthetic process	2.58E-03
50	GO:0044206: UMP salvage	2.58E-03
51	GO:0006749: glutathione metabolic process	2.58E-03
52	GO:0010037: response to carbon dioxide	2.58E-03
53	GO:0015976: carbon utilization	2.58E-03
54	GO:0009765: photosynthesis, light harvesting	2.58E-03
55	GO:0071249: cellular response to nitrate	2.58E-03
56	GO:0006183: GTP biosynthetic process	2.58E-03
57	GO:2000122: negative regulation of stomatal complex development	2.58E-03
58	GO:0042546: cell wall biogenesis	2.63E-03
59	GO:0016120: carotene biosynthetic process	3.30E-03
60	GO:0032543: mitochondrial translation	3.30E-03
61	GO:0043097: pyrimidine nucleoside salvage	3.30E-03
62	GO:0006564: L-serine biosynthetic process	3.30E-03
63	GO:0010236: plastoquinone biosynthetic process	3.30E-03
64	GO:0045038: protein import into chloroplast thylakoid membrane	3.30E-03
65	GO:0009247: glycolipid biosynthetic process	3.30E-03
66	GO:0016117: carotenoid biosynthetic process	3.40E-03
67	GO:0071555: cell wall organization	3.42E-03
68	GO:0042335: cuticle development	3.68E-03
69	GO:0010190: cytochrome b6f complex assembly	4.08E-03
70	GO:0006206: pyrimidine nucleobase metabolic process	4.08E-03
71	GO:0032973: amino acid export	4.08E-03
72	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.08E-03
73	GO:0009117: nucleotide metabolic process	4.08E-03
74	GO:0046855: inositol phosphate dephosphorylation	4.08E-03
75	GO:0009972: cytidine deamination	4.08E-03
76	GO:0006561: proline biosynthetic process	4.08E-03
77	GO:0010405: arabinogalactan protein metabolic process	4.08E-03
78	GO:0016554: cytidine to uridine editing	4.08E-03
79	GO:0009826: unidimensional cell growth	4.53E-03
80	GO:0016132: brassinosteroid biosynthetic process	4.89E-03
81	GO:0006694: steroid biosynthetic process	4.92E-03
82	GO:0009854: oxidative photosynthetic carbon pathway	4.92E-03
83	GO:0010019: chloroplast-nucleus signaling pathway	4.92E-03
84	GO:0009955: adaxial/abaxial pattern specification	4.92E-03
85	GO:0032502: developmental process	5.23E-03
86	GO:0007264: small GTPase mediated signal transduction	5.23E-03
87	GO:0055114: oxidation-reduction process	5.70E-03
88	GO:0071669: plant-type cell wall organization or biogenesis	5.81E-03
89	GO:0006400: tRNA modification	5.81E-03
90	GO:0009610: response to symbiotic fungus	5.81E-03
91	GO:0009395: phospholipid catabolic process	5.81E-03
92	GO:0009772: photosynthetic electron transport in photosystem II	5.81E-03
93	GO:0043090: amino acid import	5.81E-03
94	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.81E-03
95	GO:0009828: plant-type cell wall loosening	5.94E-03
96	GO:0009690: cytokinin metabolic process	6.75E-03
97	GO:0006605: protein targeting	6.75E-03
98	GO:0019375: galactolipid biosynthetic process	6.75E-03
99	GO:0009704: de-etiolation	6.75E-03
100	GO:0008610: lipid biosynthetic process	6.75E-03
101	GO:0016126: sterol biosynthetic process	7.09E-03
102	GO:0010497: plasmodesmata-mediated intercellular transport	7.75E-03
103	GO:0017004: cytochrome complex assembly	7.75E-03
104	GO:0009808: lignin metabolic process	7.75E-03
105	GO:0009932: cell tip growth	7.75E-03
106	GO:0071482: cellular response to light stimulus	7.75E-03
107	GO:0010411: xyloglucan metabolic process	8.36E-03
108	GO:0045454: cell redox homeostasis	8.75E-03
109	GO:0080144: amino acid homeostasis	8.79E-03
110	GO:0033384: geranyl diphosphate biosynthetic process	8.79E-03
111	GO:0000902: cell morphogenesis	8.79E-03
112	GO:0045337: farnesyl diphosphate biosynthetic process	8.79E-03
113	GO:0010206: photosystem II repair	8.79E-03
114	GO:0000160: phosphorelay signal transduction system	9.74E-03
115	GO:0006779: porphyrin-containing compound biosynthetic process	9.89E-03
116	GO:1900865: chloroplast RNA modification	9.89E-03
117	GO:0009834: plant-type secondary cell wall biogenesis	1.02E-02
118	GO:0006633: fatty acid biosynthetic process	1.02E-02
119	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.10E-02
120	GO:0006535: cysteine biosynthetic process from serine	1.10E-02
121	GO:0009688: abscisic acid biosynthetic process	1.10E-02
122	GO:0043069: negative regulation of programmed cell death	1.10E-02
123	GO:0006949: syncytium formation	1.10E-02
124	GO:0009073: aromatic amino acid family biosynthetic process	1.22E-02
125	GO:0006415: translational termination	1.22E-02
126	GO:0006352: DNA-templated transcription, initiation	1.22E-02
127	GO:0009750: response to fructose	1.22E-02
128	GO:0030148: sphingolipid biosynthetic process	1.22E-02
129	GO:0000038: very long-chain fatty acid metabolic process	1.22E-02
130	GO:0009773: photosynthetic electron transport in photosystem I	1.22E-02
131	GO:0006790: sulfur compound metabolic process	1.34E-02
132	GO:0015706: nitrate transport	1.34E-02
133	GO:0010628: positive regulation of gene expression	1.47E-02
134	GO:0050826: response to freezing	1.47E-02
135	GO:0006541: glutamine metabolic process	1.60E-02
136	GO:0010207: photosystem II assembly	1.60E-02
137	GO:0008643: carbohydrate transport	1.65E-02
138	GO:0019853: L-ascorbic acid biosynthetic process	1.74E-02
139	GO:0046854: phosphatidylinositol phosphorylation	1.74E-02
140	GO:0010167: response to nitrate	1.74E-02
141	GO:0006833: water transport	1.88E-02
142	GO:0009664: plant-type cell wall organization	1.91E-02
143	GO:0042538: hyperosmotic salinity response	1.91E-02
144	GO:0006487: protein N-linked glycosylation	2.02E-02
145	GO:0019344: cysteine biosynthetic process	2.02E-02
146	GO:0009116: nucleoside metabolic process	2.02E-02
147	GO:0000027: ribosomal large subunit assembly	2.02E-02
148	GO:0009736: cytokinin-activated signaling pathway	2.05E-02
149	GO:0007017: microtubule-based process	2.17E-02
150	GO:0019953: sexual reproduction	2.17E-02
151	GO:0006418: tRNA aminoacylation for protein translation	2.17E-02
152	GO:0061077: chaperone-mediated protein folding	2.32E-02
153	GO:0046686: response to cadmium ion	2.39E-02
154	GO:0016226: iron-sulfur cluster assembly	2.48E-02
155	GO:0080167: response to karrikin	2.63E-02
156	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.64E-02
157	GO:0019722: calcium-mediated signaling	2.80E-02
158	GO:0042127: regulation of cell proliferation	2.80E-02
159	GO:0009414: response to water deprivation	2.80E-02
160	GO:0009306: protein secretion	2.80E-02
161	GO:0000271: polysaccharide biosynthetic process	3.13E-02
162	GO:0034220: ion transmembrane transport	3.13E-02
163	GO:0000413: protein peptidyl-prolyl isomerization	3.13E-02
164	GO:0010305: leaf vascular tissue pattern formation	3.30E-02
165	GO:0010182: sugar mediated signaling pathway	3.30E-02
166	GO:0009646: response to absence of light	3.48E-02
167	GO:0000302: response to reactive oxygen species	3.83E-02
168	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.83E-02
169	GO:0016032: viral process	4.02E-02
170	GO:0042744: hydrogen peroxide catabolic process	4.16E-02
171	GO:1901657: glycosyl compound metabolic process	4.21E-02
172	GO:0009790: embryo development	4.27E-02
173	GO:0009567: double fertilization forming a zygote and endosperm	4.40E-02
174	GO:0007267: cell-cell signaling	4.59E-02
175	GO:0040008: regulation of growth	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0008887: glycerate kinase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
6	GO:0005048: signal sequence binding	0.00E+00
7	GO:0050614: delta24-sterol reductase activity	0.00E+00
8	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
9	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
10	GO:0019843: rRNA binding	2.55E-11
11	GO:0003735: structural constituent of ribosome	1.74E-09
12	GO:0005528: FK506 binding	8.23E-06
13	GO:0016851: magnesium chelatase activity	4.92E-05
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.25E-05
15	GO:0051753: mannan synthase activity	2.63E-04
16	GO:0004071: aspartate-ammonia ligase activity	3.78E-04
17	GO:0047560: 3-dehydrosphinganine reductase activity	3.78E-04
18	GO:0009374: biotin binding	3.78E-04
19	GO:0004853: uroporphyrinogen decarboxylase activity	3.78E-04
20	GO:0004832: valine-tRNA ligase activity	3.78E-04
21	GO:0004328: formamidase activity	3.78E-04
22	GO:0000248: C-5 sterol desaturase activity	3.78E-04
23	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.78E-04
24	GO:0000170: sphingosine hydroxylase activity	3.78E-04
25	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.78E-04
26	GO:0080132: fatty acid alpha-hydroxylase activity	3.78E-04
27	GO:0004655: porphobilinogen synthase activity	3.78E-04
28	GO:0016491: oxidoreductase activity	7.24E-04
29	GO:0052833: inositol monophosphate 4-phosphatase activity	8.22E-04
30	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	8.22E-04
31	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	8.22E-04
32	GO:0010291: carotene beta-ring hydroxylase activity	8.22E-04
33	GO:0004617: phosphoglycerate dehydrogenase activity	8.22E-04
34	GO:0003938: IMP dehydrogenase activity	8.22E-04
35	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	8.22E-04
36	GO:0052832: inositol monophosphate 3-phosphatase activity	8.22E-04
37	GO:0042284: sphingolipid delta-4 desaturase activity	8.22E-04
38	GO:0008934: inositol monophosphate 1-phosphatase activity	8.22E-04
39	GO:0016722: oxidoreductase activity, oxidizing metal ions	8.30E-04
40	GO:0004148: dihydrolipoyl dehydrogenase activity	1.33E-03
41	GO:0035250: UDP-galactosyltransferase activity	1.92E-03
42	GO:0016149: translation release factor activity, codon specific	1.92E-03
43	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.92E-03
44	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.92E-03
45	GO:0008097: 5S rRNA binding	1.92E-03
46	GO:0001872: (1->3)-beta-D-glucan binding	1.92E-03
47	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.92E-03
48	GO:0035529: NADH pyrophosphatase activity	1.92E-03
49	GO:0004506: squalene monooxygenase activity	2.58E-03
50	GO:0043495: protein anchor	2.58E-03
51	GO:0004659: prenyltransferase activity	2.58E-03
52	GO:0001053: plastid sigma factor activity	2.58E-03
53	GO:0004845: uracil phosphoribosyltransferase activity	2.58E-03
54	GO:0004045: aminoacyl-tRNA hydrolase activity	2.58E-03
55	GO:0016987: sigma factor activity	2.58E-03
56	GO:0052793: pectin acetylesterase activity	2.58E-03
57	GO:0046527: glucosyltransferase activity	2.58E-03
58	GO:0003924: GTPase activity	3.20E-03
59	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.30E-03
60	GO:0004040: amidase activity	3.30E-03
61	GO:0003989: acetyl-CoA carboxylase activity	3.30E-03
62	GO:0004130: cytochrome-c peroxidase activity	4.08E-03
63	GO:0016208: AMP binding	4.08E-03
64	GO:0016462: pyrophosphatase activity	4.08E-03
65	GO:0016688: L-ascorbate peroxidase activity	4.08E-03
66	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.08E-03
67	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.89E-03
68	GO:0004124: cysteine synthase activity	4.92E-03
69	GO:0051920: peroxiredoxin activity	4.92E-03
70	GO:0004126: cytidine deaminase activity	4.92E-03
71	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.92E-03
72	GO:0004849: uridine kinase activity	4.92E-03
73	GO:0000156: phosphorelay response regulator activity	5.58E-03
74	GO:0019899: enzyme binding	5.81E-03
75	GO:0016597: amino acid binding	6.69E-03
76	GO:0016209: antioxidant activity	6.75E-03
77	GO:0008312: 7S RNA binding	6.75E-03
78	GO:0005525: GTP binding	6.82E-03
79	GO:0052689: carboxylic ester hydrolase activity	7.75E-03
80	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.36E-03
81	GO:0003747: translation release factor activity	8.79E-03
82	GO:0004337: geranyltranstransferase activity	8.79E-03
83	GO:0008794: arsenate reductase (glutaredoxin) activity	1.22E-02
84	GO:0004161: dimethylallyltranstransferase activity	1.22E-02
85	GO:0003993: acid phosphatase activity	1.23E-02
86	GO:0004022: alcohol dehydrogenase (NAD) activity	1.47E-02
87	GO:0004089: carbonate dehydratase activity	1.47E-02
88	GO:0051119: sugar transmembrane transporter activity	1.74E-02
89	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.88E-02
90	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.88E-02
91	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.88E-02
92	GO:0004601: peroxidase activity	2.01E-02
93	GO:0051536: iron-sulfur cluster binding	2.02E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	2.05E-02
95	GO:0016760: cellulose synthase (UDP-forming) activity	2.64E-02
96	GO:0022891: substrate-specific transmembrane transporter activity	2.64E-02
97	GO:0030570: pectate lyase activity	2.64E-02
98	GO:0004650: polygalacturonase activity	2.67E-02
99	GO:0008514: organic anion transmembrane transporter activity	2.80E-02
100	GO:0004812: aminoacyl-tRNA ligase activity	2.96E-02
101	GO:0003713: transcription coactivator activity	3.30E-02
102	GO:0008080: N-acetyltransferase activity	3.30E-02
103	GO:0010181: FMN binding	3.48E-02
104	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.76E-02
105	GO:0016740: transferase activity	3.78E-02
106	GO:0048038: quinone binding	3.83E-02
107	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.24E-02
108	GO:0005200: structural constituent of cytoskeleton	4.59E-02
109	GO:0015250: water channel activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009507: chloroplast	1.45E-27
4	GO:0009570: chloroplast stroma	1.58E-24
5	GO:0009941: chloroplast envelope	5.61E-14
6	GO:0005840: ribosome	1.01E-12
7	GO:0009535: chloroplast thylakoid membrane	8.82E-12
8	GO:0009543: chloroplast thylakoid lumen	2.55E-11
9	GO:0031977: thylakoid lumen	1.38E-10
10	GO:0009579: thylakoid	2.15E-09
11	GO:0031225: anchored component of membrane	5.87E-06
12	GO:0009534: chloroplast thylakoid	1.25E-05
13	GO:0010007: magnesium chelatase complex	2.24E-05
14	GO:0046658: anchored component of plasma membrane	1.64E-04
15	GO:0009505: plant-type cell wall	6.35E-04
16	GO:0080085: signal recognition particle, chloroplast targeting	8.22E-04
17	GO:0000311: plastid large ribosomal subunit	1.13E-03
18	GO:0009509: chromoplast	1.33E-03
19	GO:0009317: acetyl-CoA carboxylase complex	1.33E-03
20	GO:0005576: extracellular region	1.65E-03
21	GO:0015935: small ribosomal subunit	2.42E-03
22	GO:0048046: apoplast	3.98E-03
23	GO:0009536: plastid	5.33E-03
24	GO:0009533: chloroplast stromal thylakoid	5.81E-03
25	GO:0031969: chloroplast membrane	6.66E-03
26	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.75E-03
27	GO:0045298: tubulin complex	8.79E-03
28	GO:0005763: mitochondrial small ribosomal subunit	8.79E-03
29	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.79E-03
30	GO:0015934: large ribosomal subunit	1.07E-02
31	GO:0005618: cell wall	1.20E-02
32	GO:0032040: small-subunit processome	1.34E-02
33	GO:0009506: plasmodesma	1.55E-02
34	GO:0042651: thylakoid membrane	2.17E-02
35	GO:0009654: photosystem II oxygen evolving complex	2.17E-02
36	GO:0016020: membrane	2.76E-02
37	GO:0009706: chloroplast inner membrane	2.93E-02
38	GO:0016021: integral component of membrane	3.11E-02
39	GO:0009523: photosystem II	3.66E-02
40	GO:0019898: extrinsic component of membrane	3.66E-02
41	GO:0005778: peroxisomal membrane	4.59E-02
42	GO:0009295: nucleoid	4.59E-02
43	GO:0000139: Golgi membrane	4.79E-02
44	GO:0030529: intracellular ribonucleoprotein complex	4.98E-02