co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G44575

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0042820: vitamin B6 catabolic process	0.00E+00
6	GO:0015979: photosynthesis	9.23E-26
7	GO:0015995: chlorophyll biosynthetic process	8.06E-12
8	GO:0009409: response to cold	5.15E-07
9	GO:0009735: response to cytokinin	1.54E-06
10	GO:0090391: granum assembly	1.58E-06
11	GO:0009773: photosynthetic electron transport in photosystem I	1.96E-06
12	GO:0010037: response to carbon dioxide	7.19E-06
13	GO:0015976: carbon utilization	7.19E-06
14	GO:2000122: negative regulation of stomatal complex development	7.19E-06
15	GO:0042742: defense response to bacterium	1.99E-05
16	GO:0009772: photosynthetic electron transport in photosystem II	3.54E-05
17	GO:0010196: nonphotochemical quenching	3.54E-05
18	GO:0010027: thylakoid membrane organization	5.87E-05
19	GO:0010206: photosystem II repair	7.31E-05
20	GO:1902458: positive regulation of stomatal opening	8.78E-05
21	GO:0034337: RNA folding	8.78E-05
22	GO:0009443: pyridoxal 5'-phosphate salvage	8.78E-05
23	GO:0043489: RNA stabilization	8.78E-05
24	GO:0015671: oxygen transport	8.78E-05
25	GO:0018119: peptidyl-cysteine S-nitrosylation	1.25E-04
26	GO:0019253: reductive pentose-phosphate cycle	1.91E-04
27	GO:0010207: photosystem II assembly	1.91E-04
28	GO:0009658: chloroplast organization	1.98E-04
29	GO:0006729: tetrahydrobiopterin biosynthetic process	2.08E-04
30	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.08E-04
31	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.08E-04
32	GO:0055114: oxidation-reduction process	2.11E-04
33	GO:0009768: photosynthesis, light harvesting in photosystem I	2.99E-04
34	GO:0006000: fructose metabolic process	3.48E-04
35	GO:0055070: copper ion homeostasis	5.01E-04
36	GO:0071484: cellular response to light intensity	5.01E-04
37	GO:0015986: ATP synthesis coupled proton transport	5.76E-04
38	GO:0019464: glycine decarboxylation via glycine cleavage system	6.66E-04
39	GO:0009765: photosynthesis, light harvesting	6.66E-04
40	GO:0045727: positive regulation of translation	6.66E-04
41	GO:0006546: glycine catabolic process	6.66E-04
42	GO:0006021: inositol biosynthetic process	6.66E-04
43	GO:0045038: protein import into chloroplast thylakoid membrane	8.44E-04
44	GO:0031365: N-terminal protein amino acid modification	8.44E-04
45	GO:0032543: mitochondrial translation	8.44E-04
46	GO:0046855: inositol phosphate dephosphorylation	1.03E-03
47	GO:0010190: cytochrome b6f complex assembly	1.03E-03
48	GO:0018298: protein-chromophore linkage	1.21E-03
49	GO:0010189: vitamin E biosynthetic process	1.23E-03
50	GO:0009854: oxidative photosynthetic carbon pathway	1.23E-03
51	GO:0010555: response to mannitol	1.23E-03
52	GO:0071470: cellular response to osmotic stress	1.23E-03
53	GO:1901259: chloroplast rRNA processing	1.23E-03
54	GO:0017148: negative regulation of translation	1.23E-03
55	GO:0010218: response to far red light	1.32E-03
56	GO:0010119: regulation of stomatal movement	1.39E-03
57	GO:0009769: photosynthesis, light harvesting in photosystem II	1.44E-03
58	GO:0009645: response to low light intensity stimulus	1.44E-03
59	GO:0042254: ribosome biogenesis	1.49E-03
60	GO:0009637: response to blue light	1.52E-03
61	GO:2000070: regulation of response to water deprivation	1.66E-03
62	GO:0009819: drought recovery	1.66E-03
63	GO:0009642: response to light intensity	1.66E-03
64	GO:0032544: plastid translation	1.89E-03
65	GO:0006002: fructose 6-phosphate metabolic process	1.89E-03
66	GO:0015996: chlorophyll catabolic process	1.89E-03
67	GO:0007186: G-protein coupled receptor signaling pathway	1.89E-03
68	GO:0010114: response to red light	1.94E-03
69	GO:0006754: ATP biosynthetic process	2.14E-03
70	GO:0009245: lipid A biosynthetic process	2.14E-03
71	GO:0019432: triglyceride biosynthetic process	2.14E-03
72	GO:0045454: cell redox homeostasis	2.39E-03
73	GO:0000272: polysaccharide catabolic process	2.93E-03
74	GO:0006790: sulfur compound metabolic process	3.21E-03
75	GO:0045037: protein import into chloroplast stroma	3.21E-03
76	GO:0006006: glucose metabolic process	3.50E-03
77	GO:0006094: gluconeogenesis	3.50E-03
78	GO:0005986: sucrose biosynthetic process	3.50E-03
79	GO:0010020: chloroplast fission	3.80E-03
80	GO:0046854: phosphatidylinositol phosphorylation	4.10E-03
81	GO:0046688: response to copper ion	4.10E-03
82	GO:0019853: L-ascorbic acid biosynthetic process	4.10E-03
83	GO:0006412: translation	4.32E-03
84	GO:0006636: unsaturated fatty acid biosynthetic process	4.42E-03
85	GO:0019344: cysteine biosynthetic process	4.74E-03
86	GO:0061077: chaperone-mediated protein folding	5.42E-03
87	GO:0009269: response to desiccation	5.42E-03
88	GO:0006633: fatty acid biosynthetic process	5.78E-03
89	GO:0009411: response to UV	6.12E-03
90	GO:0009416: response to light stimulus	6.44E-03
91	GO:0000413: protein peptidyl-prolyl isomerization	7.24E-03
92	GO:0042631: cellular response to water deprivation	7.24E-03
93	GO:0042335: cuticle development	7.24E-03
94	GO:0010182: sugar mediated signaling pathway	7.62E-03
95	GO:0019252: starch biosynthetic process	8.42E-03
96	GO:0080167: response to karrikin	1.22E-02
97	GO:0009627: systemic acquired resistance	1.24E-02
98	GO:0009817: defense response to fungus, incompatible interaction	1.38E-02
99	GO:0009631: cold acclimation	1.53E-02
100	GO:0016051: carbohydrate biosynthetic process	1.63E-02
101	GO:0009853: photorespiration	1.63E-02
102	GO:0045087: innate immune response	1.63E-02
103	GO:0034599: cellular response to oxidative stress	1.68E-02
104	GO:0030001: metal ion transport	1.79E-02
105	GO:0006631: fatty acid metabolic process	1.84E-02
106	GO:0009644: response to high light intensity	2.06E-02
107	GO:0006812: cation transport	2.29E-02
108	GO:0006364: rRNA processing	2.41E-02
109	GO:0006096: glycolytic process	2.72E-02
110	GO:0006396: RNA processing	3.17E-02
111	GO:0009611: response to wounding	3.28E-02
112	GO:0045893: positive regulation of transcription, DNA-templated	3.68E-02
113	GO:0009737: response to abscisic acid	4.05E-02
114	GO:0007623: circadian rhythm	4.58E-02
115	GO:0009451: RNA modification	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0008887: glycerate kinase activity	0.00E+00
8	GO:0045550: geranylgeranyl reductase activity	0.00E+00
9	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
10	GO:0019843: rRNA binding	2.46E-06
11	GO:0051920: peroxiredoxin activity	2.61E-05
12	GO:0016209: antioxidant activity	4.65E-05
13	GO:0016168: chlorophyll binding	6.40E-05
14	GO:0010347: L-galactose-1-phosphate phosphatase activity	8.78E-05
15	GO:0005344: oxygen transporter activity	8.78E-05
16	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	8.78E-05
17	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	8.78E-05
18	GO:0005509: calcium ion binding	1.24E-04
19	GO:0004089: carbonate dehydratase activity	1.68E-04
20	GO:0051537: 2 iron, 2 sulfur cluster binding	2.00E-04
21	GO:0042389: omega-3 fatty acid desaturase activity	2.08E-04
22	GO:0010297: heteropolysaccharide binding	2.08E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	2.08E-04
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.08E-04
25	GO:0008934: inositol monophosphate 1-phosphatase activity	2.08E-04
26	GO:0052833: inositol monophosphate 4-phosphatase activity	2.08E-04
27	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.08E-04
28	GO:0008967: phosphoglycolate phosphatase activity	2.08E-04
29	GO:0016630: protochlorophyllide reductase activity	2.08E-04
30	GO:0031409: pigment binding	2.42E-04
31	GO:0070402: NADPH binding	3.48E-04
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.48E-04
33	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.48E-04
34	GO:0004375: glycine dehydrogenase (decarboxylating) activity	5.01E-04
35	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.01E-04
36	GO:0016851: magnesium chelatase activity	5.01E-04
37	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	5.37E-04
38	GO:0003735: structural constituent of ribosome	6.48E-04
39	GO:0004659: prenyltransferase activity	6.66E-04
40	GO:1990137: plant seed peroxidase activity	6.66E-04
41	GO:0003959: NADPH dehydrogenase activity	8.44E-04
42	GO:0042578: phosphoric ester hydrolase activity	1.03E-03
43	GO:0031177: phosphopantetheine binding	1.03E-03
44	GO:0046872: metal ion binding	1.05E-03
45	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.23E-03
46	GO:0000035: acyl binding	1.23E-03
47	GO:0008235: metalloexopeptidase activity	1.44E-03
48	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.66E-03
49	GO:0004033: aldo-keto reductase (NADP) activity	1.66E-03
50	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.89E-03
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.26E-03
52	GO:0030234: enzyme regulator activity	2.65E-03
53	GO:0004177: aminopeptidase activity	2.93E-03
54	GO:0031072: heat shock protein binding	3.50E-03
55	GO:0008266: poly(U) RNA binding	3.80E-03
56	GO:0005528: FK506 binding	4.74E-03
57	GO:0043424: protein histidine kinase binding	5.07E-03
58	GO:0003756: protein disulfide isomerase activity	6.48E-03
59	GO:0050662: coenzyme binding	8.02E-03
60	GO:0004601: peroxidase activity	9.83E-03
61	GO:0050661: NADP binding	1.79E-02
62	GO:0009055: electron carrier activity	1.94E-02
63	GO:0005198: structural molecule activity	2.12E-02
64	GO:0051287: NAD binding	2.24E-02
65	GO:0003723: RNA binding	2.76E-02
66	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.78E-02
67	GO:0051082: unfolded protein binding	3.10E-02
68	GO:0015035: protein disulfide oxidoreductase activity	3.17E-02
69	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.71E-02
70	GO:0015297: antiporter activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	1.43E-48
4	GO:0009535: chloroplast thylakoid membrane	9.00E-42
5	GO:0009579: thylakoid	3.78E-32
6	GO:0009941: chloroplast envelope	7.61E-32
7	GO:0009534: chloroplast thylakoid	2.65E-30
8	GO:0009570: chloroplast stroma	4.18E-24
9	GO:0009543: chloroplast thylakoid lumen	2.42E-16
10	GO:0031977: thylakoid lumen	9.23E-15
11	GO:0009654: photosystem II oxygen evolving complex	6.53E-12
12	GO:0010319: stromule	2.59E-10
13	GO:0019898: extrinsic component of membrane	8.20E-09
14	GO:0030095: chloroplast photosystem II	3.86E-08
15	GO:0009706: chloroplast inner membrane	1.36E-06
16	GO:0010287: plastoglobule	2.14E-06
17	GO:0015935: small ribosomal subunit	1.01E-05
18	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.83E-05
19	GO:0005840: ribosome	2.30E-05
20	GO:0009522: photosystem I	2.63E-05
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.31E-05
22	GO:0042170: plastid membrane	2.08E-04
23	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.08E-04
24	GO:0030076: light-harvesting complex	2.16E-04
25	GO:0042651: thylakoid membrane	2.99E-04
26	GO:0009532: plastid stroma	3.29E-04
27	GO:0009528: plastid inner membrane	3.48E-04
28	GO:0010007: magnesium chelatase complex	3.48E-04
29	GO:0005960: glycine cleavage complex	5.01E-04
30	GO:0048046: apoplast	5.86E-04
31	GO:0009523: photosystem II	6.17E-04
32	GO:0009544: chloroplast ATP synthase complex	6.66E-04
33	GO:0009527: plastid outer membrane	6.66E-04
34	GO:0009517: PSII associated light-harvesting complex II	6.66E-04
35	GO:0055035: plastid thylakoid membrane	8.44E-04
36	GO:0009538: photosystem I reaction center	1.66E-03
37	GO:0005811: lipid particle	1.89E-03
38	GO:0009539: photosystem II reaction center	1.89E-03
39	GO:0031969: chloroplast membrane	1.90E-03
40	GO:0000311: plastid large ribosomal subunit	3.21E-03
41	GO:0032040: small-subunit processome	3.21E-03
42	GO:0016020: membrane	3.38E-03
43	GO:0030529: intracellular ribonucleoprotein complex	1.14E-02
44	GO:0009707: chloroplast outer membrane	1.38E-02