co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G43670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090042: tubulin deacetylation	0.00E+00
2	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
3	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:0061157: mRNA destabilization	0.00E+00
6	GO:0090706: specification of plant organ position	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0033494: ferulate metabolic process	0.00E+00
9	GO:0061635: regulation of protein complex stability	0.00E+00
10	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
11	GO:0042549: photosystem II stabilization	2.48E-06
12	GO:0010207: photosystem II assembly	2.63E-06
13	GO:0009773: photosynthetic electron transport in photosystem I	4.56E-05
14	GO:0015994: chlorophyll metabolic process	7.06E-05
15	GO:0009735: response to cytokinin	8.46E-05
16	GO:0015979: photosynthesis	3.33E-04
17	GO:0010480: microsporocyte differentiation	3.34E-04
18	GO:0000481: maturation of 5S rRNA	3.34E-04
19	GO:0042547: cell wall modification involved in multidimensional cell growth	3.34E-04
20	GO:0065002: intracellular protein transmembrane transport	3.34E-04
21	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	3.34E-04
22	GO:0043609: regulation of carbon utilization	3.34E-04
23	GO:0010028: xanthophyll cycle	3.34E-04
24	GO:0034337: RNA folding	3.34E-04
25	GO:0010450: inflorescence meristem growth	3.34E-04
26	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.34E-04
27	GO:0009644: response to high light intensity	3.34E-04
28	GO:0000476: maturation of 4.5S rRNA	3.34E-04
29	GO:0000967: rRNA 5'-end processing	3.34E-04
30	GO:0043953: protein transport by the Tat complex	3.34E-04
31	GO:0009657: plastid organization	4.36E-04
32	GO:0010206: photosystem II repair	5.24E-04
33	GO:0006096: glycolytic process	6.13E-04
34	GO:0034755: iron ion transmembrane transport	7.29E-04
35	GO:0016122: xanthophyll metabolic process	7.29E-04
36	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	7.29E-04
37	GO:0034470: ncRNA processing	7.29E-04
38	GO:0016560: protein import into peroxisome matrix, docking	7.29E-04
39	GO:1900871: chloroplast mRNA modification	7.29E-04
40	GO:0043085: positive regulation of catalytic activity	8.32E-04
41	GO:0009718: anthocyanin-containing compound biosynthetic process	1.07E-03
42	GO:0006094: gluconeogenesis	1.07E-03
43	GO:0051176: positive regulation of sulfur metabolic process	1.18E-03
44	GO:0006696: ergosterol biosynthetic process	1.18E-03
45	GO:0045165: cell fate commitment	1.18E-03
46	GO:2000082: regulation of L-ascorbic acid biosynthetic process	1.18E-03
47	GO:0006000: fructose metabolic process	1.18E-03
48	GO:0006013: mannose metabolic process	1.18E-03
49	GO:0045454: cell redox homeostasis	1.59E-03
50	GO:2001141: regulation of RNA biosynthetic process	1.70E-03
51	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.70E-03
52	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.70E-03
53	GO:1902476: chloride transmembrane transport	1.70E-03
54	GO:0051513: regulation of monopolar cell growth	1.70E-03
55	GO:0009800: cinnamic acid biosynthetic process	1.70E-03
56	GO:0001678: cellular glucose homeostasis	1.70E-03
57	GO:0006542: glutamine biosynthetic process	2.28E-03
58	GO:0019676: ammonia assimilation cycle	2.28E-03
59	GO:0010023: proanthocyanidin biosynthetic process	2.28E-03
60	GO:0045727: positive regulation of translation	2.28E-03
61	GO:0008152: metabolic process	2.74E-03
62	GO:0016117: carotenoid biosynthetic process	2.84E-03
63	GO:0043097: pyrimidine nucleoside salvage	2.91E-03
64	GO:0045038: protein import into chloroplast thylakoid membrane	2.91E-03
65	GO:0006461: protein complex assembly	2.91E-03
66	GO:1902183: regulation of shoot apical meristem development	2.91E-03
67	GO:0009435: NAD biosynthetic process	2.91E-03
68	GO:0010158: abaxial cell fate specification	2.91E-03
69	GO:0016120: carotene biosynthetic process	2.91E-03
70	GO:0000741: karyogamy	3.60E-03
71	GO:0000470: maturation of LSU-rRNA	3.60E-03
72	GO:1902456: regulation of stomatal opening	3.60E-03
73	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.60E-03
74	GO:0006559: L-phenylalanine catabolic process	3.60E-03
75	GO:0006206: pyrimidine nucleobase metabolic process	3.60E-03
76	GO:0010019: chloroplast-nucleus signaling pathway	4.33E-03
77	GO:0046835: carbohydrate phosphorylation	4.33E-03
78	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.33E-03
79	GO:0051510: regulation of unidimensional cell growth	5.11E-03
80	GO:0009772: photosynthetic electron transport in photosystem II	5.11E-03
81	GO:0006821: chloride transport	5.11E-03
82	GO:0048437: floral organ development	5.11E-03
83	GO:0010196: nonphotochemical quenching	5.11E-03
84	GO:1900057: positive regulation of leaf senescence	5.11E-03
85	GO:0009645: response to low light intensity stimulus	5.11E-03
86	GO:0032508: DNA duplex unwinding	5.94E-03
87	GO:0010492: maintenance of shoot apical meristem identity	5.94E-03
88	GO:0009231: riboflavin biosynthetic process	5.94E-03
89	GO:0006402: mRNA catabolic process	5.94E-03
90	GO:0009642: response to light intensity	5.94E-03
91	GO:0009850: auxin metabolic process	5.94E-03
92	GO:0009058: biosynthetic process	6.45E-03
93	GO:0042128: nitrate assimilation	6.58E-03
94	GO:0032544: plastid translation	6.81E-03
95	GO:0010093: specification of floral organ identity	6.81E-03
96	GO:0009699: phenylpropanoid biosynthetic process	6.81E-03
97	GO:0009932: cell tip growth	6.81E-03
98	GO:0006002: fructose 6-phosphate metabolic process	6.81E-03
99	GO:0071482: cellular response to light stimulus	6.81E-03
100	GO:0015995: chlorophyll biosynthetic process	6.94E-03
101	GO:0006979: response to oxidative stress	7.24E-03
102	GO:0018298: protein-chromophore linkage	7.70E-03
103	GO:0000373: Group II intron splicing	7.73E-03
104	GO:0009060: aerobic respiration	7.73E-03
105	GO:0009821: alkaloid biosynthetic process	7.73E-03
106	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.73E-03
107	GO:0006098: pentose-phosphate shunt	7.73E-03
108	GO:2000024: regulation of leaf development	7.73E-03
109	GO:0048507: meristem development	7.73E-03
110	GO:0006413: translational initiation	8.32E-03
111	GO:0010205: photoinhibition	8.68E-03
112	GO:0007568: aging	8.91E-03
113	GO:0006629: lipid metabolic process	9.09E-03
114	GO:0007623: circadian rhythm	9.10E-03
115	GO:0006949: syncytium formation	9.69E-03
116	GO:0009299: mRNA transcription	9.69E-03
117	GO:0006879: cellular iron ion homeostasis	1.07E-02
118	GO:0006352: DNA-templated transcription, initiation	1.07E-02
119	GO:0018119: peptidyl-cysteine S-nitrosylation	1.07E-02
120	GO:0016485: protein processing	1.07E-02
121	GO:0048229: gametophyte development	1.07E-02
122	GO:0009698: phenylpropanoid metabolic process	1.07E-02
123	GO:0015706: nitrate transport	1.18E-02
124	GO:0009409: response to cold	1.28E-02
125	GO:2000028: regulation of photoperiodism, flowering	1.29E-02
126	GO:0018107: peptidyl-threonine phosphorylation	1.29E-02
127	GO:0010075: regulation of meristem growth	1.29E-02
128	GO:0009725: response to hormone	1.29E-02
129	GO:0009767: photosynthetic electron transport chain	1.29E-02
130	GO:0019253: reductive pentose-phosphate cycle	1.41E-02
131	GO:0009934: regulation of meristem structural organization	1.41E-02
132	GO:0010143: cutin biosynthetic process	1.41E-02
133	GO:0009933: meristem structural organization	1.41E-02
134	GO:0006810: transport	1.50E-02
135	GO:0009826: unidimensional cell growth	1.51E-02
136	GO:0010053: root epidermal cell differentiation	1.53E-02
137	GO:0010167: response to nitrate	1.53E-02
138	GO:0009658: chloroplast organization	1.59E-02
139	GO:0005975: carbohydrate metabolic process	1.60E-02
140	GO:0006636: unsaturated fatty acid biosynthetic process	1.65E-02
141	GO:0034976: response to endoplasmic reticulum stress	1.65E-02
142	GO:0046686: response to cadmium ion	1.68E-02
143	GO:0006364: rRNA processing	1.71E-02
144	GO:0009944: polarity specification of adaxial/abaxial axis	1.77E-02
145	GO:0080147: root hair cell development	1.77E-02
146	GO:0009768: photosynthesis, light harvesting in photosystem I	1.90E-02
147	GO:0016575: histone deacetylation	1.90E-02
148	GO:0006418: tRNA aminoacylation for protein translation	1.90E-02
149	GO:0009723: response to ethylene	1.91E-02
150	GO:0061077: chaperone-mediated protein folding	2.03E-02
151	GO:0080167: response to karrikin	2.08E-02
152	GO:0030433: ubiquitin-dependent ERAD pathway	2.17E-02
153	GO:0006730: one-carbon metabolic process	2.17E-02
154	GO:0019748: secondary metabolic process	2.17E-02
155	GO:0009814: defense response, incompatible interaction	2.17E-02
156	GO:0016226: iron-sulfur cluster assembly	2.17E-02
157	GO:0040007: growth	2.31E-02
158	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.31E-02
159	GO:0019722: calcium-mediated signaling	2.45E-02
160	GO:0009742: brassinosteroid mediated signaling pathway	2.58E-02
161	GO:0000413: protein peptidyl-prolyl isomerization	2.74E-02
162	GO:0010087: phloem or xylem histogenesis	2.74E-02
163	GO:0048653: anther development	2.74E-02
164	GO:0006662: glycerol ether metabolic process	2.89E-02
165	GO:0010197: polar nucleus fusion	2.89E-02
166	GO:0009741: response to brassinosteroid	2.89E-02
167	GO:0010154: fruit development	2.89E-02
168	GO:0009791: post-embryonic development	3.20E-02
169	GO:0010193: response to ozone	3.36E-02
170	GO:0016032: viral process	3.52E-02
171	GO:0030163: protein catabolic process	3.69E-02
172	GO:0009828: plant-type cell wall loosening	3.85E-02
173	GO:0009567: double fertilization forming a zygote and endosperm	3.85E-02
174	GO:0007267: cell-cell signaling	4.02E-02
175	GO:0071805: potassium ion transmembrane transport	4.02E-02
176	GO:0045490: pectin catabolic process	4.19E-02
177	GO:0009451: RNA modification	4.29E-02
178	GO:0010027: thylakoid membrane organization	4.37E-02
179	GO:0001666: response to hypoxia	4.37E-02
180	GO:0010411: xyloglucan metabolic process	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
5	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
6	GO:0045436: lycopene beta cyclase activity	0.00E+00
7	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
8	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
9	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
10	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
11	GO:0008987: quinolinate synthetase A activity	0.00E+00
12	GO:0051721: protein phosphatase 2A binding	0.00E+00
13	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
14	GO:0042903: tubulin deacetylase activity	0.00E+00
15	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
16	GO:0043014: alpha-tubulin binding	0.00E+00
17	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
18	GO:0008974: phosphoribulokinase activity	0.00E+00
19	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
20	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.79E-06
22	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.06E-06
23	GO:0005528: FK506 binding	5.58E-06
24	GO:0016787: hydrolase activity	4.47E-05
25	GO:0004332: fructose-bisphosphate aldolase activity	1.60E-04
26	GO:0019843: rRNA binding	1.96E-04
27	GO:0051996: squalene synthase activity	3.34E-04
28	GO:0046906: tetrapyrrole binding	3.34E-04
29	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	3.34E-04
30	GO:0009671: nitrate:proton symporter activity	3.34E-04
31	GO:0008047: enzyme activator activity	7.22E-04
32	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.29E-04
33	GO:0047746: chlorophyllase activity	7.29E-04
34	GO:0016868: intramolecular transferase activity, phosphotransferases	7.29E-04
35	GO:0005094: Rho GDP-dissociation inhibitor activity	7.29E-04
36	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	7.29E-04
37	GO:0043425: bHLH transcription factor binding	7.29E-04
38	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.29E-04
39	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	7.29E-04
40	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.29E-04
41	GO:0015929: hexosaminidase activity	7.29E-04
42	GO:0004563: beta-N-acetylhexosaminidase activity	7.29E-04
43	GO:0004565: beta-galactosidase activity	1.07E-03
44	GO:0003935: GTP cyclohydrolase II activity	1.18E-03
45	GO:0047274: galactinol-sucrose galactosyltransferase activity	1.18E-03
46	GO:0050734: hydroxycinnamoyltransferase activity	1.18E-03
47	GO:0045548: phenylalanine ammonia-lyase activity	1.18E-03
48	GO:0002161: aminoacyl-tRNA editing activity	1.18E-03
49	GO:0004148: dihydrolipoyl dehydrogenase activity	1.18E-03
50	GO:0048487: beta-tubulin binding	1.70E-03
51	GO:0005536: glucose binding	2.28E-03
52	GO:0004396: hexokinase activity	2.28E-03
53	GO:0001053: plastid sigma factor activity	2.28E-03
54	GO:0019158: mannokinase activity	2.28E-03
55	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.28E-03
56	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.28E-03
57	GO:0008453: alanine-glyoxylate transaminase activity	2.28E-03
58	GO:0016987: sigma factor activity	2.28E-03
59	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.28E-03
60	GO:0005253: anion channel activity	2.28E-03
61	GO:0003727: single-stranded RNA binding	2.62E-03
62	GO:0003756: protein disulfide isomerase activity	2.62E-03
63	GO:0004356: glutamate-ammonia ligase activity	2.91E-03
64	GO:0008374: O-acyltransferase activity	2.91E-03
65	GO:0042578: phosphoric ester hydrolase activity	3.60E-03
66	GO:0005247: voltage-gated chloride channel activity	3.60E-03
67	GO:2001070: starch binding	3.60E-03
68	GO:0004559: alpha-mannosidase activity	4.33E-03
69	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.33E-03
70	GO:0004849: uridine kinase activity	4.33E-03
71	GO:0019899: enzyme binding	5.11E-03
72	GO:0016168: chlorophyll binding	6.23E-03
73	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.81E-03
74	GO:0004252: serine-type endopeptidase activity	6.89E-03
75	GO:0008236: serine-type peptidase activity	7.32E-03
76	GO:0016844: strictosidine synthase activity	8.68E-03
77	GO:0015112: nitrate transmembrane transporter activity	8.68E-03
78	GO:0005381: iron ion transmembrane transporter activity	8.68E-03
79	GO:0003743: translation initiation factor activity	1.11E-02
80	GO:0000049: tRNA binding	1.18E-02
81	GO:0042802: identical protein binding	1.24E-02
82	GO:0004185: serine-type carboxypeptidase activity	1.26E-02
83	GO:0031072: heat shock protein binding	1.29E-02
84	GO:0008081: phosphoric diester hydrolase activity	1.29E-02
85	GO:0004022: alcohol dehydrogenase (NAD) activity	1.29E-02
86	GO:0043621: protein self-association	1.37E-02
87	GO:0008266: poly(U) RNA binding	1.41E-02
88	GO:0004190: aspartic-type endopeptidase activity	1.53E-02
89	GO:0008146: sulfotransferase activity	1.53E-02
90	GO:0031409: pigment binding	1.65E-02
91	GO:0016298: lipase activity	1.77E-02
92	GO:0004407: histone deacetylase activity	1.77E-02
93	GO:0003723: RNA binding	1.84E-02
94	GO:0015079: potassium ion transmembrane transporter activity	1.90E-02
95	GO:0004707: MAP kinase activity	2.03E-02
96	GO:0004176: ATP-dependent peptidase activity	2.03E-02
97	GO:0033612: receptor serine/threonine kinase binding	2.03E-02
98	GO:0016779: nucleotidyltransferase activity	2.17E-02
99	GO:0022891: substrate-specific transmembrane transporter activity	2.31E-02
100	GO:0030570: pectate lyase activity	2.31E-02
101	GO:0047134: protein-disulfide reductase activity	2.60E-02
102	GO:0004812: aminoacyl-tRNA ligase activity	2.60E-02
103	GO:0003735: structural constituent of ribosome	2.66E-02
104	GO:0004871: signal transducer activity	2.77E-02
105	GO:0004791: thioredoxin-disulfide reductase activity	3.05E-02
106	GO:0050662: coenzyme binding	3.05E-02
107	GO:0005515: protein binding	3.35E-02
108	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.36E-02
109	GO:0048038: quinone binding	3.36E-02
110	GO:0004518: nuclease activity	3.52E-02
111	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.69E-02
112	GO:0000156: phosphorelay response regulator activity	3.69E-02
113	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.91E-02
114	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0043233: organelle lumen	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0009507: chloroplast	3.66E-28
5	GO:0009535: chloroplast thylakoid membrane	6.79E-20
6	GO:0009570: chloroplast stroma	7.70E-19
7	GO:0009534: chloroplast thylakoid	4.54E-18
8	GO:0009543: chloroplast thylakoid lumen	3.24E-16
9	GO:0009941: chloroplast envelope	4.26E-13
10	GO:0009579: thylakoid	6.54E-10
11	GO:0030095: chloroplast photosystem II	4.68E-08
12	GO:0031977: thylakoid lumen	1.35E-06
13	GO:0009533: chloroplast stromal thylakoid	6.86E-06
14	GO:0009523: photosystem II	3.31E-05
15	GO:0031969: chloroplast membrane	2.51E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	3.34E-04
17	GO:0031361: integral component of thylakoid membrane	3.34E-04
18	GO:0009782: photosystem I antenna complex	3.34E-04
19	GO:0048046: apoplast	3.36E-04
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.24E-04
21	GO:0080085: signal recognition particle, chloroplast targeting	7.29E-04
22	GO:0010287: plastoglobule	1.05E-03
23	GO:0005782: peroxisomal matrix	1.18E-03
24	GO:0033281: TAT protein transport complex	1.18E-03
25	GO:0000312: plastid small ribosomal subunit	1.21E-03
26	GO:0009654: photosystem II oxygen evolving complex	1.84E-03
27	GO:0042651: thylakoid membrane	1.84E-03
28	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	2.28E-03
29	GO:0030660: Golgi-associated vesicle membrane	2.28E-03
30	GO:0034707: chloride channel complex	3.60E-03
31	GO:0019898: extrinsic component of membrane	3.81E-03
32	GO:0030529: intracellular ribonucleoprotein complex	5.89E-03
33	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	5.94E-03
34	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.81E-03
35	GO:0005763: mitochondrial small ribosomal subunit	7.73E-03
36	GO:0008180: COP9 signalosome	7.73E-03
37	GO:0005765: lysosomal membrane	1.07E-02
38	GO:0032040: small-subunit processome	1.18E-02
39	GO:0031307: integral component of mitochondrial outer membrane	1.18E-02
40	GO:0030076: light-harvesting complex	1.53E-02
41	GO:0005777: peroxisome	2.64E-02
42	GO:0009505: plant-type cell wall	3.12E-02
43	GO:0005623: cell	3.13E-02
44	GO:0043231: intracellular membrane-bounded organelle	3.82E-02
45	GO:0010319: stromule	4.02E-02
46	GO:0005618: cell wall	4.18E-02
47	GO:0005576: extracellular region	4.42E-02