GO Enrichment Analysis of Co-expressed Genes with
AT1G42970
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 3 | GO:0046677: response to antibiotic | 0.00E+00 |
| 4 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 7 | GO:0006412: translation | 7.77E-09 |
| 8 | GO:0006636: unsaturated fatty acid biosynthetic process | 7.80E-06 |
| 9 | GO:0071482: cellular response to light stimulus | 7.06E-05 |
| 10 | GO:0009657: plastid organization | 7.06E-05 |
| 11 | GO:0032544: plastid translation | 7.06E-05 |
| 12 | GO:0009409: response to cold | 7.61E-05 |
| 13 | GO:0015995: chlorophyll biosynthetic process | 9.50E-05 |
| 14 | GO:0043489: RNA stabilization | 9.88E-05 |
| 15 | GO:0042371: vitamin K biosynthetic process | 9.88E-05 |
| 16 | GO:1902458: positive regulation of stomatal opening | 9.88E-05 |
| 17 | GO:0034337: RNA folding | 9.88E-05 |
| 18 | GO:0010205: photoinhibition | 1.06E-04 |
| 19 | GO:0043085: positive regulation of catalytic activity | 1.48E-04 |
| 20 | GO:0006352: DNA-templated transcription, initiation | 1.48E-04 |
| 21 | GO:0010207: photosystem II assembly | 2.25E-04 |
| 22 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.32E-04 |
| 23 | GO:0034755: iron ion transmembrane transport | 2.32E-04 |
| 24 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 2.32E-04 |
| 25 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.32E-04 |
| 26 | GO:0009735: response to cytokinin | 2.47E-04 |
| 27 | GO:0009658: chloroplast organization | 2.56E-04 |
| 28 | GO:0042254: ribosome biogenesis | 2.65E-04 |
| 29 | GO:0010581: regulation of starch biosynthetic process | 3.86E-04 |
| 30 | GO:0006954: inflammatory response | 3.86E-04 |
| 31 | GO:0005977: glycogen metabolic process | 3.86E-04 |
| 32 | GO:0006011: UDP-glucose metabolic process | 3.86E-04 |
| 33 | GO:0009800: cinnamic acid biosynthetic process | 5.54E-04 |
| 34 | GO:2001141: regulation of RNA biosynthetic process | 5.54E-04 |
| 35 | GO:0015994: chlorophyll metabolic process | 7.37E-04 |
| 36 | GO:0071483: cellular response to blue light | 7.37E-04 |
| 37 | GO:0006542: glutamine biosynthetic process | 7.37E-04 |
| 38 | GO:0019676: ammonia assimilation cycle | 7.37E-04 |
| 39 | GO:0009247: glycolipid biosynthetic process | 9.32E-04 |
| 40 | GO:0010236: plastoquinone biosynthetic process | 9.32E-04 |
| 41 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.32E-04 |
| 42 | GO:0010027: thylakoid membrane organization | 1.09E-03 |
| 43 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.14E-03 |
| 44 | GO:0006559: L-phenylalanine catabolic process | 1.14E-03 |
| 45 | GO:0032973: amino acid export | 1.14E-03 |
| 46 | GO:0010190: cytochrome b6f complex assembly | 1.14E-03 |
| 47 | GO:0010942: positive regulation of cell death | 1.14E-03 |
| 48 | GO:0042549: photosystem II stabilization | 1.14E-03 |
| 49 | GO:1901259: chloroplast rRNA processing | 1.36E-03 |
| 50 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.36E-03 |
| 51 | GO:0010189: vitamin E biosynthetic process | 1.36E-03 |
| 52 | GO:0009854: oxidative photosynthetic carbon pathway | 1.36E-03 |
| 53 | GO:0010019: chloroplast-nucleus signaling pathway | 1.36E-03 |
| 54 | GO:0043090: amino acid import | 1.59E-03 |
| 55 | GO:0007568: aging | 1.61E-03 |
| 56 | GO:0042255: ribosome assembly | 1.84E-03 |
| 57 | GO:0019375: galactolipid biosynthetic process | 1.84E-03 |
| 58 | GO:2000070: regulation of response to water deprivation | 1.84E-03 |
| 59 | GO:0052543: callose deposition in cell wall | 1.84E-03 |
| 60 | GO:0019430: removal of superoxide radicals | 2.10E-03 |
| 61 | GO:0009699: phenylpropanoid biosynthetic process | 2.10E-03 |
| 62 | GO:0010114: response to red light | 2.27E-03 |
| 63 | GO:0009821: alkaloid biosynthetic process | 2.37E-03 |
| 64 | GO:0080144: amino acid homeostasis | 2.37E-03 |
| 65 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.65E-03 |
| 66 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.65E-03 |
| 67 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.95E-03 |
| 68 | GO:0006364: rRNA processing | 3.04E-03 |
| 69 | GO:0009773: photosynthetic electron transport in photosystem I | 3.25E-03 |
| 70 | GO:0019684: photosynthesis, light reaction | 3.25E-03 |
| 71 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.25E-03 |
| 72 | GO:0006879: cellular iron ion homeostasis | 3.25E-03 |
| 73 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.25E-03 |
| 74 | GO:0009767: photosynthetic electron transport chain | 3.89E-03 |
| 75 | GO:0010020: chloroplast fission | 4.22E-03 |
| 76 | GO:0019253: reductive pentose-phosphate cycle | 4.22E-03 |
| 77 | GO:0006396: RNA processing | 4.44E-03 |
| 78 | GO:0090351: seedling development | 4.57E-03 |
| 79 | GO:0009058: biosynthetic process | 5.68E-03 |
| 80 | GO:0031408: oxylipin biosynthetic process | 6.03E-03 |
| 81 | GO:0055114: oxidation-reduction process | 6.30E-03 |
| 82 | GO:0006633: fatty acid biosynthetic process | 6.76E-03 |
| 83 | GO:0009561: megagametogenesis | 7.23E-03 |
| 84 | GO:0009306: protein secretion | 7.23E-03 |
| 85 | GO:0009451: RNA modification | 7.60E-03 |
| 86 | GO:0000413: protein peptidyl-prolyl isomerization | 8.07E-03 |
| 87 | GO:0009741: response to brassinosteroid | 8.50E-03 |
| 88 | GO:0046686: response to cadmium ion | 8.91E-03 |
| 89 | GO:0009791: post-embryonic development | 9.39E-03 |
| 90 | GO:0032502: developmental process | 1.03E-02 |
| 91 | GO:0006457: protein folding | 1.09E-02 |
| 92 | GO:0015979: photosynthesis | 1.63E-02 |
| 93 | GO:0045454: cell redox homeostasis | 1.71E-02 |
| 94 | GO:0009631: cold acclimation | 1.71E-02 |
| 95 | GO:0009853: photorespiration | 1.82E-02 |
| 96 | GO:0045087: innate immune response | 1.82E-02 |
| 97 | GO:0009637: response to blue light | 1.82E-02 |
| 98 | GO:0032259: methylation | 2.02E-02 |
| 99 | GO:0051707: response to other organism | 2.18E-02 |
| 100 | GO:0009744: response to sucrose | 2.18E-02 |
| 101 | GO:0006397: mRNA processing | 2.21E-02 |
| 102 | GO:0006812: cation transport | 2.57E-02 |
| 103 | GO:0006417: regulation of translation | 2.90E-02 |
| 104 | GO:0006096: glycolytic process | 3.04E-02 |
| 105 | GO:0009611: response to wounding | 3.83E-02 |
| 106 | GO:0009845: seed germination | 4.30E-02 |
| 107 | GO:0042744: hydrogen peroxide catabolic process | 4.46E-02 |
| 108 | GO:0009790: embryo development | 4.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 3 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 4 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 5 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 6 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 8.85E-18 |
| 8 | GO:0003735: structural constituent of ribosome | 2.52E-10 |
| 9 | GO:0016987: sigma factor activity | 8.78E-06 |
| 10 | GO:0001053: plastid sigma factor activity | 8.78E-06 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.65E-05 |
| 12 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 7.06E-05 |
| 13 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 9.88E-05 |
| 14 | GO:0046906: tetrapyrrole binding | 9.88E-05 |
| 15 | GO:0045485: omega-6 fatty acid desaturase activity | 9.88E-05 |
| 16 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 9.88E-05 |
| 17 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 9.88E-05 |
| 18 | GO:0031072: heat shock protein binding | 1.98E-04 |
| 19 | GO:0008266: poly(U) RNA binding | 2.25E-04 |
| 20 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 2.32E-04 |
| 21 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.32E-04 |
| 22 | GO:0047746: chlorophyllase activity | 2.32E-04 |
| 23 | GO:0042389: omega-3 fatty acid desaturase activity | 2.32E-04 |
| 24 | GO:0004618: phosphoglycerate kinase activity | 2.32E-04 |
| 25 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.32E-04 |
| 26 | GO:0005528: FK506 binding | 3.16E-04 |
| 27 | GO:0045548: phenylalanine ammonia-lyase activity | 3.86E-04 |
| 28 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 3.86E-04 |
| 29 | GO:0003727: single-stranded RNA binding | 4.98E-04 |
| 30 | GO:0035250: UDP-galactosyltransferase activity | 5.54E-04 |
| 31 | GO:0051538: 3 iron, 4 sulfur cluster binding | 9.32E-04 |
| 32 | GO:0004356: glutamate-ammonia ligase activity | 9.32E-04 |
| 33 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.36E-03 |
| 34 | GO:0019899: enzyme binding | 1.59E-03 |
| 35 | GO:0003746: translation elongation factor activity | 1.77E-03 |
| 36 | GO:0003729: mRNA binding | 2.07E-03 |
| 37 | GO:0008135: translation factor activity, RNA binding | 2.10E-03 |
| 38 | GO:0005381: iron ion transmembrane transporter activity | 2.65E-03 |
| 39 | GO:0016844: strictosidine synthase activity | 2.65E-03 |
| 40 | GO:0008047: enzyme activator activity | 2.95E-03 |
| 41 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.04E-03 |
| 42 | GO:0009055: electron carrier activity | 4.15E-03 |
| 43 | GO:0051082: unfolded protein binding | 4.31E-03 |
| 44 | GO:0003723: RNA binding | 4.40E-03 |
| 45 | GO:0004791: thioredoxin-disulfide reductase activity | 8.94E-03 |
| 46 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.08E-02 |
| 47 | GO:0008168: methyltransferase activity | 1.11E-02 |
| 48 | GO:0016788: hydrolase activity, acting on ester bonds | 1.17E-02 |
| 49 | GO:0016597: amino acid binding | 1.23E-02 |
| 50 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.49E-02 |
| 51 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.49E-02 |
| 52 | GO:0004222: metalloendopeptidase activity | 1.65E-02 |
| 53 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.71E-02 |
| 54 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.88E-02 |
| 55 | GO:0043621: protein self-association | 2.31E-02 |
| 56 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.31E-02 |
| 57 | GO:0016491: oxidoreductase activity | 2.72E-02 |
| 58 | GO:0003690: double-stranded DNA binding | 2.77E-02 |
| 59 | GO:0015171: amino acid transmembrane transporter activity | 2.90E-02 |
| 60 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.11E-02 |
| 61 | GO:0016874: ligase activity | 3.32E-02 |
| 62 | GO:0015035: protein disulfide oxidoreductase activity | 3.54E-02 |
| 63 | GO:0016787: hydrolase activity | 4.94E-02 |
| 64 | GO:0015297: antiporter activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.10E-53 |
| 2 | GO:0009941: chloroplast envelope | 3.46E-29 |
| 3 | GO:0009570: chloroplast stroma | 1.93E-24 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.81E-16 |
| 5 | GO:0009579: thylakoid | 3.37E-12 |
| 6 | GO:0009534: chloroplast thylakoid | 8.16E-11 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 9.20E-11 |
| 8 | GO:0005840: ribosome | 1.62E-09 |
| 9 | GO:0009706: chloroplast inner membrane | 2.06E-06 |
| 10 | GO:0000311: plastid large ribosomal subunit | 3.33E-06 |
| 11 | GO:0000312: plastid small ribosomal subunit | 5.23E-06 |
| 12 | GO:0009295: nucleoid | 6.23E-05 |
| 13 | GO:0009344: nitrite reductase complex [NAD(P)H] | 9.88E-05 |
| 14 | GO:0009547: plastid ribosome | 9.88E-05 |
| 15 | GO:0015934: large ribosomal subunit | 1.37E-04 |
| 16 | GO:0042170: plastid membrane | 2.32E-04 |
| 17 | GO:0009536: plastid | 3.34E-04 |
| 18 | GO:0031969: chloroplast membrane | 3.63E-04 |
| 19 | GO:0033281: TAT protein transport complex | 3.86E-04 |
| 20 | GO:0042646: plastid nucleoid | 5.54E-04 |
| 21 | GO:0010319: stromule | 9.73E-04 |
| 22 | GO:0016363: nuclear matrix | 1.36E-03 |
| 23 | GO:0005762: mitochondrial large ribosomal subunit | 1.36E-03 |
| 24 | GO:0031977: thylakoid lumen | 2.09E-03 |
| 25 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.37E-03 |
| 26 | GO:0005763: mitochondrial small ribosomal subunit | 2.37E-03 |
| 27 | GO:0032040: small-subunit processome | 3.57E-03 |
| 28 | GO:0019013: viral nucleocapsid | 3.89E-03 |
| 29 | GO:0030095: chloroplast photosystem II | 4.22E-03 |
| 30 | GO:0009654: photosystem II oxygen evolving complex | 5.65E-03 |
| 31 | GO:0015935: small ribosomal subunit | 6.03E-03 |
| 32 | GO:0022626: cytosolic ribosome | 7.43E-03 |
| 33 | GO:0009522: photosystem I | 8.94E-03 |
| 34 | GO:0019898: extrinsic component of membrane | 9.39E-03 |
| 35 | GO:0022627: cytosolic small ribosomal subunit | 9.84E-03 |
| 36 | GO:0030529: intracellular ribonucleoprotein complex | 1.28E-02 |
| 37 | GO:0048046: apoplast | 3.16E-02 |
| 38 | GO:0005759: mitochondrial matrix | 4.78E-02 |