co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G42540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
2	GO:0007172: signal complex assembly	0.00E+00
3	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
4	GO:0043609: regulation of carbon utilization	2.41E-05
5	GO:0010028: xanthophyll cycle	2.41E-05
6	GO:0015969: guanosine tetraphosphate metabolic process	2.41E-05
7	GO:0010493: Lewis a epitope biosynthetic process	2.41E-05
8	GO:0016122: xanthophyll metabolic process	6.16E-05
9	GO:0006000: fructose metabolic process	1.09E-04
10	GO:0015994: chlorophyll metabolic process	2.21E-04
11	GO:0016120: carotene biosynthetic process	2.84E-04
12	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.51E-04
13	GO:1900056: negative regulation of leaf senescence	4.92E-04
14	GO:0034968: histone lysine methylation	5.68E-04
15	GO:0048564: photosystem I assembly	5.68E-04
16	GO:0006002: fructose 6-phosphate metabolic process	6.45E-04
17	GO:0000373: Group II intron splicing	7.25E-04
18	GO:0010206: photosystem II repair	7.25E-04
19	GO:0010205: photoinhibition	8.07E-04
20	GO:0010380: regulation of chlorophyll biosynthetic process	8.07E-04
21	GO:0016571: histone methylation	8.07E-04
22	GO:0046856: phosphatidylinositol dephosphorylation	9.78E-04
23	GO:0006094: gluconeogenesis	1.16E-03
24	GO:0007623: circadian rhythm	1.23E-03
25	GO:0009266: response to temperature stimulus	1.25E-03
26	GO:0009934: regulation of meristem structural organization	1.25E-03
27	GO:0010207: photosystem II assembly	1.25E-03
28	GO:0006636: unsaturated fatty acid biosynthetic process	1.45E-03
29	GO:2000377: regulation of reactive oxygen species metabolic process	1.55E-03
30	GO:0006289: nucleotide-excision repair	1.55E-03
31	GO:0010017: red or far-red light signaling pathway	1.87E-03
32	GO:0016117: carotenoid biosynthetic process	2.21E-03
33	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.40E-03
34	GO:0071472: cellular response to salt stress	2.45E-03
35	GO:0010305: leaf vascular tissue pattern formation	2.45E-03
36	GO:0042752: regulation of circadian rhythm	2.57E-03
37	GO:0030163: protein catabolic process	3.08E-03
38	GO:0071805: potassium ion transmembrane transport	3.35E-03
39	GO:0006629: lipid metabolic process	3.41E-03
40	GO:0016126: sterol biosynthetic process	3.63E-03
41	GO:0000160: phosphorelay signal transduction system	4.49E-03
42	GO:0006811: ion transport	4.64E-03
43	GO:0006499: N-terminal protein myristoylation	4.64E-03
44	GO:0009910: negative regulation of flower development	4.80E-03
45	GO:0009631: cold acclimation	4.80E-03
46	GO:0009853: photorespiration	5.11E-03
47	GO:0006631: fatty acid metabolic process	5.75E-03
48	GO:0006486: protein glycosylation	7.47E-03
49	GO:0006813: potassium ion transport	7.47E-03
50	GO:0006096: glycolytic process	8.40E-03
51	GO:0006633: fatty acid biosynthetic process	1.31E-02
52	GO:0006413: translational initiation	1.34E-02
53	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.52E-02
54	GO:0009739: response to gibberellin	1.52E-02
55	GO:0009658: chloroplast organization	1.92E-02
56	GO:0042254: ribosome biogenesis	1.94E-02
57	GO:0009860: pollen tube growth	2.02E-02
58	GO:0007049: cell cycle	2.07E-02
59	GO:0009723: response to ethylene	2.12E-02
60	GO:0045892: negative regulation of transcription, DNA-templated	2.57E-02
61	GO:0009793: embryo development ending in seed dormancy	2.83E-02
62	GO:0009751: response to salicylic acid	2.92E-02
63	GO:0009408: response to heat	2.95E-02
64	GO:0016310: phosphorylation	3.00E-02
65	GO:0006397: mRNA processing	3.04E-02
66	GO:0009753: response to jasmonic acid	3.10E-02
67	GO:0009735: response to cytokinin	4.16E-02
68	GO:0009416: response to light stimulus	4.43E-02
69	GO:0055114: oxidation-reduction process	4.71E-02
70	GO:0051301: cell division	4.71E-02
71	GO:0045893: positive regulation of transcription, DNA-templated	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
2	GO:0045436: lycopene beta cyclase activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0046920: alpha-(1->3)-fucosyltransferase activity	2.41E-05
8	GO:0004312: fatty acid synthase activity	6.16E-05
9	GO:0008728: GTP diphosphokinase activity	6.16E-05
10	GO:0010429: methyl-CpNpN binding	1.09E-04
11	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.09E-04
12	GO:0010428: methyl-CpNpG binding	1.09E-04
13	GO:0008453: alanine-glyoxylate transaminase activity	2.21E-04
14	GO:0004506: squalene monooxygenase activity	2.21E-04
15	GO:0070628: proteasome binding	2.21E-04
16	GO:0002020: protease binding	2.84E-04
17	GO:2001070: starch binding	3.51E-04
18	GO:0004332: fructose-bisphosphate aldolase activity	3.51E-04
19	GO:0000293: ferric-chelate reductase activity	3.51E-04
20	GO:0031593: polyubiquitin binding	3.51E-04
21	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.51E-04
22	GO:0008417: fucosyltransferase activity	7.25E-04
23	GO:0008327: methyl-CpG binding	9.78E-04
24	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.07E-03
25	GO:0008081: phosphoric diester hydrolase activity	1.16E-03
26	GO:0043130: ubiquitin binding	1.55E-03
27	GO:0015079: potassium ion transmembrane transporter activity	1.65E-03
28	GO:0004176: ATP-dependent peptidase activity	1.76E-03
29	GO:0033612: receptor serine/threonine kinase binding	1.76E-03
30	GO:0018024: histone-lysine N-methyltransferase activity	2.21E-03
31	GO:0000156: phosphorelay response regulator activity	3.08E-03
32	GO:0003684: damaged DNA binding	3.22E-03
33	GO:0008483: transaminase activity	3.35E-03
34	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.35E-03
35	GO:0008237: metallopeptidase activity	3.35E-03
36	GO:0004222: metalloendopeptidase activity	4.64E-03
37	GO:0003746: translation elongation factor activity	5.11E-03
38	GO:0042393: histone binding	5.59E-03
39	GO:0043621: protein self-association	6.42E-03
40	GO:0016298: lipase activity	7.65E-03
41	GO:0005525: GTP binding	9.90E-03
42	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.14E-02
43	GO:0008168: methyltransferase activity	1.86E-02
44	GO:0016301: kinase activity	1.96E-02
45	GO:0050660: flavin adenine dinucleotide binding	2.12E-02
46	GO:0016787: hydrolase activity	2.62E-02
47	GO:0008289: lipid binding	3.73E-02
48	GO:0016887: ATPase activity	4.03E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.21E-05
2	GO:0009543: chloroplast thylakoid lumen	9.10E-04
3	GO:0009534: chloroplast thylakoid	9.87E-04
4	GO:0030095: chloroplast photosystem II	1.25E-03
5	GO:0000775: chromosome, centromeric region	1.87E-03
6	GO:0032580: Golgi cisterna membrane	3.22E-03
7	GO:0030529: intracellular ribonucleoprotein complex	3.63E-03
8	GO:0009570: chloroplast stroma	4.73E-03
9	GO:0000325: plant-type vacuole	4.80E-03
10	GO:0009535: chloroplast thylakoid membrane	5.19E-03
11	GO:0031977: thylakoid lumen	5.75E-03
12	GO:0009579: thylakoid	7.19E-03
13	GO:0005886: plasma membrane	1.27E-02
14	GO:0016020: membrane	3.93E-02
15	GO:0048046: apoplast	4.44E-02
16	GO:0009506: plasmodesma	4.84E-02
17	GO:0005777: peroxisome	4.89E-02