co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G35612

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0006833: water transport	3.63E-06
4	GO:0034220: ion transmembrane transport	1.28E-05
5	GO:0006810: transport	1.84E-04
6	GO:1901332: negative regulation of lateral root development	4.15E-04
7	GO:0051513: regulation of monopolar cell growth	4.15E-04
8	GO:0080170: hydrogen peroxide transmembrane transport	4.15E-04
9	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	4.15E-04
10	GO:0010023: proanthocyanidin biosynthetic process	5.53E-04
11	GO:0045727: positive regulation of translation	5.53E-04
12	GO:0006461: protein complex assembly	7.00E-04
13	GO:1902456: regulation of stomatal opening	8.57E-04
14	GO:1900056: negative regulation of leaf senescence	1.19E-03
15	GO:0010196: nonphotochemical quenching	1.19E-03
16	GO:0009723: response to ethylene	1.21E-03
17	GO:0046620: regulation of organ growth	1.37E-03
18	GO:0009657: plastid organization	1.56E-03
19	GO:0032544: plastid translation	1.56E-03
20	GO:0010206: photosystem II repair	1.76E-03
21	GO:0009638: phototropism	1.97E-03
22	GO:0009684: indoleacetic acid biosynthetic process	2.41E-03
23	GO:0010015: root morphogenesis	2.41E-03
24	GO:0009773: photosynthetic electron transport in photosystem I	2.41E-03
25	GO:0016024: CDP-diacylglycerol biosynthetic process	2.64E-03
26	GO:0009718: anthocyanin-containing compound biosynthetic process	2.88E-03
27	GO:0010143: cutin biosynthetic process	3.12E-03
28	GO:0009651: response to salt stress	3.89E-03
29	GO:0048511: rhythmic process	4.44E-03
30	GO:0019748: secondary metabolic process	4.73E-03
31	GO:0055085: transmembrane transport	6.03E-03
32	GO:0042752: regulation of circadian rhythm	6.56E-03
33	GO:0010193: response to ozone	7.22E-03
34	GO:0009630: gravitropism	7.56E-03
35	GO:0071281: cellular response to iron ion	7.90E-03
36	GO:0015979: photosynthesis	1.04E-02
37	GO:0015995: chlorophyll biosynthetic process	1.05E-02
38	GO:0009414: response to water deprivation	1.06E-02
39	GO:0010311: lateral root formation	1.17E-02
40	GO:0009733: response to auxin	1.26E-02
41	GO:0032259: methylation	1.29E-02
42	GO:0009753: response to jasmonic acid	1.45E-02
43	GO:0008152: metabolic process	1.49E-02
44	GO:0009926: auxin polar transport	1.59E-02
45	GO:0009644: response to high light intensity	1.68E-02
46	GO:0009664: plant-type cell wall organization	1.87E-02
47	GO:0009734: auxin-activated signaling pathway	1.91E-02
48	GO:0006364: rRNA processing	1.97E-02
49	GO:0009585: red, far-red light phototransduction	1.97E-02
50	GO:0051603: proteolysis involved in cellular protein catabolic process	2.01E-02
51	GO:0010224: response to UV-B	2.01E-02
52	GO:0009735: response to cytokinin	2.20E-02
53	GO:0009611: response to wounding	2.46E-02
54	GO:0007165: signal transduction	2.75E-02
55	GO:0006413: translational initiation	3.55E-02
56	GO:0040008: regulation of growth	3.61E-02
57	GO:0007623: circadian rhythm	3.73E-02
58	GO:0045490: pectin catabolic process	3.73E-02
59	GO:0009739: response to gibberellin	4.04E-02
60	GO:0006470: protein dephosphorylation	4.10E-02
61	GO:0010468: regulation of gene expression	4.23E-02
62	GO:0006508: proteolysis	4.45E-02
63	GO:0006979: response to oxidative stress	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0015250: water channel activity	3.76E-05
4	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	7.07E-05
5	GO:0016868: intramolecular transferase activity, phosphotransferases	1.70E-04
6	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.70E-04
7	GO:0005528: FK506 binding	2.00E-04
8	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	5.53E-04
9	GO:0016791: phosphatase activity	6.02E-04
10	GO:0004040: amidase activity	7.00E-04
11	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	8.57E-04
12	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	8.57E-04
13	GO:0004017: adenylate kinase activity	1.02E-03
14	GO:0004602: glutathione peroxidase activity	1.02E-03
15	GO:0004185: serine-type carboxypeptidase activity	1.47E-03
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.70E-03
17	GO:0031072: heat shock protein binding	2.88E-03
18	GO:0008266: poly(U) RNA binding	3.12E-03
19	GO:0004707: MAP kinase activity	4.44E-03
20	GO:0004176: ATP-dependent peptidase activity	4.44E-03
21	GO:0030570: pectate lyase activity	5.02E-03
22	GO:0003756: protein disulfide isomerase activity	5.32E-03
23	GO:0003727: single-stranded RNA binding	5.32E-03
24	GO:0050662: coenzyme binding	6.56E-03
25	GO:0005096: GTPase activator activity	1.17E-02
26	GO:0004722: protein serine/threonine phosphatase activity	1.20E-02
27	GO:0003993: acid phosphatase activity	1.37E-02
28	GO:0016491: oxidoreductase activity	1.55E-02
29	GO:0051537: 2 iron, 2 sulfur cluster binding	1.68E-02
30	GO:0005198: structural molecule activity	1.73E-02
31	GO:0031625: ubiquitin protein ligase binding	2.11E-02
32	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.26E-02
33	GO:0051082: unfolded protein binding	2.53E-02
34	GO:0016746: transferase activity, transferring acyl groups	2.58E-02
35	GO:0019843: rRNA binding	2.96E-02
36	GO:0016829: lyase activity	3.14E-02
37	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.55E-02
38	GO:0003743: translation initiation factor activity	4.16E-02
39	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.38E-02
40	GO:0008168: methyltransferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009534: chloroplast thylakoid	6.68E-12
4	GO:0009535: chloroplast thylakoid membrane	2.88E-11
5	GO:0009543: chloroplast thylakoid lumen	7.27E-10
6	GO:0009507: chloroplast	2.29E-08
7	GO:0030095: chloroplast photosystem II	2.41E-06
8	GO:0009570: chloroplast stroma	1.15E-05
9	GO:0009941: chloroplast envelope	1.23E-04
10	GO:0009531: secondary cell wall	4.15E-04
11	GO:0009579: thylakoid	1.04E-03
12	GO:0009533: chloroplast stromal thylakoid	1.19E-03
13	GO:0031977: thylakoid lumen	1.36E-03
14	GO:0042644: chloroplast nucleoid	1.76E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.76E-03
16	GO:0008180: COP9 signalosome	1.76E-03
17	GO:0009508: plastid chromosome	2.88E-03
18	GO:0005887: integral component of plasma membrane	3.17E-03
19	GO:0010287: plastoglobule	3.28E-03
20	GO:0042651: thylakoid membrane	4.17E-03
21	GO:0009654: photosystem II oxygen evolving complex	4.17E-03
22	GO:0009523: photosystem II	6.89E-03
23	GO:0019898: extrinsic component of membrane	6.89E-03
24	GO:0009295: nucleoid	8.61E-03
25	GO:0031969: chloroplast membrane	9.13E-03
26	GO:0019005: SCF ubiquitin ligase complex	1.13E-02
27	GO:0000502: proteasome complex	1.97E-02
28	GO:0046658: anchored component of plasma membrane	4.55E-02