GO Enrichment Analysis of Co-expressed Genes with
AT1G35180
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 3 | GO:0006223: uracil salvage | 0.00E+00 |
| 4 | GO:0042493: response to drug | 0.00E+00 |
| 5 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 6 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0090391: granum assembly | 3.26E-06 |
| 8 | GO:0010027: thylakoid membrane organization | 5.43E-06 |
| 9 | GO:0042335: cuticle development | 4.88E-05 |
| 10 | GO:0042372: phylloquinone biosynthetic process | 4.98E-05 |
| 11 | GO:0010196: nonphotochemical quenching | 6.70E-05 |
| 12 | GO:1902458: positive regulation of stomatal opening | 1.31E-04 |
| 13 | GO:0071277: cellular response to calcium ion | 1.31E-04 |
| 14 | GO:0042371: vitamin K biosynthetic process | 1.31E-04 |
| 15 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.03E-04 |
| 16 | GO:0043039: tRNA aminoacylation | 3.03E-04 |
| 17 | GO:0010207: photosystem II assembly | 3.34E-04 |
| 18 | GO:0019344: cysteine biosynthetic process | 4.64E-04 |
| 19 | GO:0009658: chloroplast organization | 4.78E-04 |
| 20 | GO:0042254: ribosome biogenesis | 4.92E-04 |
| 21 | GO:0046168: glycerol-3-phosphate catabolic process | 4.99E-04 |
| 22 | GO:0051604: protein maturation | 4.99E-04 |
| 23 | GO:0009735: response to cytokinin | 5.13E-04 |
| 24 | GO:0006072: glycerol-3-phosphate metabolic process | 7.14E-04 |
| 25 | GO:0009650: UV protection | 7.14E-04 |
| 26 | GO:0010731: protein glutathionylation | 7.14E-04 |
| 27 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 7.14E-04 |
| 28 | GO:0009413: response to flooding | 7.14E-04 |
| 29 | GO:0000413: protein peptidyl-prolyl isomerization | 8.42E-04 |
| 30 | GO:0009765: photosynthesis, light harvesting | 9.47E-04 |
| 31 | GO:0044206: UMP salvage | 9.47E-04 |
| 32 | GO:0006021: inositol biosynthetic process | 9.47E-04 |
| 33 | GO:0032502: developmental process | 1.18E-03 |
| 34 | GO:0016123: xanthophyll biosynthetic process | 1.20E-03 |
| 35 | GO:0006665: sphingolipid metabolic process | 1.20E-03 |
| 36 | GO:0048359: mucilage metabolic process involved in seed coat development | 1.20E-03 |
| 37 | GO:0016120: carotene biosynthetic process | 1.20E-03 |
| 38 | GO:0043097: pyrimidine nucleoside salvage | 1.20E-03 |
| 39 | GO:0010236: plastoquinone biosynthetic process | 1.20E-03 |
| 40 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.20E-03 |
| 41 | GO:0031365: N-terminal protein amino acid modification | 1.20E-03 |
| 42 | GO:0009828: plant-type cell wall loosening | 1.33E-03 |
| 43 | GO:0006206: pyrimidine nucleobase metabolic process | 1.47E-03 |
| 44 | GO:0046855: inositol phosphate dephosphorylation | 1.47E-03 |
| 45 | GO:0009117: nucleotide metabolic process | 1.47E-03 |
| 46 | GO:0071470: cellular response to osmotic stress | 1.76E-03 |
| 47 | GO:0010555: response to mannitol | 1.76E-03 |
| 48 | GO:0009772: photosynthetic electron transport in photosystem II | 2.06E-03 |
| 49 | GO:0006400: tRNA modification | 2.06E-03 |
| 50 | GO:0071555: cell wall organization | 2.06E-03 |
| 51 | GO:0009642: response to light intensity | 2.39E-03 |
| 52 | GO:0042255: ribosome assembly | 2.39E-03 |
| 53 | GO:0006353: DNA-templated transcription, termination | 2.39E-03 |
| 54 | GO:0009704: de-etiolation | 2.39E-03 |
| 55 | GO:2000070: regulation of response to water deprivation | 2.39E-03 |
| 56 | GO:0015996: chlorophyll catabolic process | 2.73E-03 |
| 57 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 2.73E-03 |
| 58 | GO:0007186: G-protein coupled receptor signaling pathway | 2.73E-03 |
| 59 | GO:0032544: plastid translation | 2.73E-03 |
| 60 | GO:0015780: nucleotide-sugar transport | 3.08E-03 |
| 61 | GO:0090333: regulation of stomatal closure | 3.08E-03 |
| 62 | GO:0006783: heme biosynthetic process | 3.08E-03 |
| 63 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.46E-03 |
| 64 | GO:0042761: very long-chain fatty acid biosynthetic process | 3.46E-03 |
| 65 | GO:0006949: syncytium formation | 3.84E-03 |
| 66 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.84E-03 |
| 67 | GO:0006535: cysteine biosynthetic process from serine | 3.84E-03 |
| 68 | GO:0009664: plant-type cell wall organization | 4.17E-03 |
| 69 | GO:0009773: photosynthetic electron transport in photosystem I | 4.24E-03 |
| 70 | GO:0005975: carbohydrate metabolic process | 4.28E-03 |
| 71 | GO:0006412: translation | 4.36E-03 |
| 72 | GO:0006790: sulfur compound metabolic process | 4.65E-03 |
| 73 | GO:0045037: protein import into chloroplast stroma | 4.65E-03 |
| 74 | GO:0009725: response to hormone | 5.08E-03 |
| 75 | GO:0010628: positive regulation of gene expression | 5.08E-03 |
| 76 | GO:0050826: response to freezing | 5.08E-03 |
| 77 | GO:0006869: lipid transport | 5.38E-03 |
| 78 | GO:0010020: chloroplast fission | 5.52E-03 |
| 79 | GO:0010167: response to nitrate | 5.97E-03 |
| 80 | GO:0019853: L-ascorbic acid biosynthetic process | 5.97E-03 |
| 81 | GO:0046854: phosphatidylinositol phosphorylation | 5.97E-03 |
| 82 | GO:0010025: wax biosynthetic process | 6.43E-03 |
| 83 | GO:0009116: nucleoside metabolic process | 6.91E-03 |
| 84 | GO:0000027: ribosomal large subunit assembly | 6.91E-03 |
| 85 | GO:0019953: sexual reproduction | 7.40E-03 |
| 86 | GO:0006418: tRNA aminoacylation for protein translation | 7.40E-03 |
| 87 | GO:0007017: microtubule-based process | 7.40E-03 |
| 88 | GO:0061077: chaperone-mediated protein folding | 7.91E-03 |
| 89 | GO:0030245: cellulose catabolic process | 8.42E-03 |
| 90 | GO:0016226: iron-sulfur cluster assembly | 8.42E-03 |
| 91 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.95E-03 |
| 92 | GO:0009411: response to UV | 8.95E-03 |
| 93 | GO:0010091: trichome branching | 9.49E-03 |
| 94 | GO:0016117: carotenoid biosynthetic process | 1.00E-02 |
| 95 | GO:0006633: fatty acid biosynthetic process | 1.00E-02 |
| 96 | GO:0080022: primary root development | 1.06E-02 |
| 97 | GO:0008360: regulation of cell shape | 1.12E-02 |
| 98 | GO:0010182: sugar mediated signaling pathway | 1.12E-02 |
| 99 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.30E-02 |
| 100 | GO:0071554: cell wall organization or biogenesis | 1.30E-02 |
| 101 | GO:0010583: response to cyclopentenone | 1.36E-02 |
| 102 | GO:1901657: glycosyl compound metabolic process | 1.42E-02 |
| 103 | GO:0009567: double fertilization forming a zygote and endosperm | 1.49E-02 |
| 104 | GO:0009826: unidimensional cell growth | 1.64E-02 |
| 105 | GO:0009627: systemic acquired resistance | 1.82E-02 |
| 106 | GO:0042128: nitrate assimilation | 1.82E-02 |
| 107 | GO:0009860: pollen tube growth | 1.84E-02 |
| 108 | GO:0015995: chlorophyll biosynthetic process | 1.89E-02 |
| 109 | GO:0010411: xyloglucan metabolic process | 1.89E-02 |
| 110 | GO:0016311: dephosphorylation | 1.96E-02 |
| 111 | GO:0009817: defense response to fungus, incompatible interaction | 2.03E-02 |
| 112 | GO:0080167: response to karrikin | 2.12E-02 |
| 113 | GO:0009834: plant-type secondary cell wall biogenesis | 2.18E-02 |
| 114 | GO:0015979: photosynthesis | 2.42E-02 |
| 115 | GO:0007165: signal transduction | 2.48E-02 |
| 116 | GO:0034599: cellular response to oxidative stress | 2.48E-02 |
| 117 | GO:0030001: metal ion transport | 2.64E-02 |
| 118 | GO:0009744: response to sucrose | 2.88E-02 |
| 119 | GO:0042546: cell wall biogenesis | 2.96E-02 |
| 120 | GO:0008643: carbohydrate transport | 3.05E-02 |
| 121 | GO:0006979: response to oxidative stress | 3.17E-02 |
| 122 | GO:0042538: hyperosmotic salinity response | 3.39E-02 |
| 123 | GO:0042545: cell wall modification | 4.48E-02 |
| 124 | GO:0009742: brassinosteroid mediated signaling pathway | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 2 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 5 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 6 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 7 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 8 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.60E-05 |
| 10 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.31E-04 |
| 11 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.31E-04 |
| 12 | GO:0004831: tyrosine-tRNA ligase activity | 1.31E-04 |
| 13 | GO:0009374: biotin binding | 1.31E-04 |
| 14 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.31E-04 |
| 15 | GO:0019843: rRNA binding | 1.37E-04 |
| 16 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.03E-04 |
| 17 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.03E-04 |
| 18 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.03E-04 |
| 19 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.03E-04 |
| 20 | GO:0008883: glutamyl-tRNA reductase activity | 3.03E-04 |
| 21 | GO:0005528: FK506 binding | 4.64E-04 |
| 22 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.99E-04 |
| 23 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 4.99E-04 |
| 24 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 4.99E-04 |
| 25 | GO:0035529: NADH pyrophosphatase activity | 7.14E-04 |
| 26 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 7.14E-04 |
| 27 | GO:0004845: uracil phosphoribosyltransferase activity | 9.47E-04 |
| 28 | GO:0004659: prenyltransferase activity | 9.47E-04 |
| 29 | GO:0003989: acetyl-CoA carboxylase activity | 1.20E-03 |
| 30 | GO:0009922: fatty acid elongase activity | 1.20E-03 |
| 31 | GO:0004040: amidase activity | 1.20E-03 |
| 32 | GO:0016208: AMP binding | 1.47E-03 |
| 33 | GO:0016462: pyrophosphatase activity | 1.47E-03 |
| 34 | GO:0004124: cysteine synthase activity | 1.76E-03 |
| 35 | GO:0051920: peroxiredoxin activity | 1.76E-03 |
| 36 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.76E-03 |
| 37 | GO:0051753: mannan synthase activity | 1.76E-03 |
| 38 | GO:0004849: uridine kinase activity | 1.76E-03 |
| 39 | GO:0003735: structural constituent of ribosome | 1.94E-03 |
| 40 | GO:0008235: metalloexopeptidase activity | 2.06E-03 |
| 41 | GO:0016209: antioxidant activity | 2.39E-03 |
| 42 | GO:0003843: 1,3-beta-D-glucan synthase activity | 2.73E-03 |
| 43 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.94E-03 |
| 44 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 3.08E-03 |
| 45 | GO:0004177: aminopeptidase activity | 4.24E-03 |
| 46 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.32E-03 |
| 47 | GO:0003690: double-stranded DNA binding | 4.62E-03 |
| 48 | GO:0031072: heat shock protein binding | 5.08E-03 |
| 49 | GO:0051536: iron-sulfur cluster binding | 6.91E-03 |
| 50 | GO:0004857: enzyme inhibitor activity | 6.91E-03 |
| 51 | GO:0008810: cellulase activity | 8.95E-03 |
| 52 | GO:0008514: organic anion transmembrane transporter activity | 9.49E-03 |
| 53 | GO:0003727: single-stranded RNA binding | 9.49E-03 |
| 54 | GO:0008289: lipid binding | 9.50E-03 |
| 55 | GO:0004812: aminoacyl-tRNA ligase activity | 1.00E-02 |
| 56 | GO:0004872: receptor activity | 1.24E-02 |
| 57 | GO:0000166: nucleotide binding | 1.29E-02 |
| 58 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.30E-02 |
| 59 | GO:0005200: structural constituent of cytoskeleton | 1.55E-02 |
| 60 | GO:0016413: O-acetyltransferase activity | 1.62E-02 |
| 61 | GO:0004601: peroxidase activity | 1.71E-02 |
| 62 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.89E-02 |
| 63 | GO:0102483: scopolin beta-glucosidase activity | 1.89E-02 |
| 64 | GO:0008236: serine-type peptidase activity | 1.96E-02 |
| 65 | GO:0052689: carboxylic ester hydrolase activity | 2.34E-02 |
| 66 | GO:0003993: acid phosphatase activity | 2.48E-02 |
| 67 | GO:0008422: beta-glucosidase activity | 2.56E-02 |
| 68 | GO:0050661: NADP binding | 2.64E-02 |
| 69 | GO:0004364: glutathione transferase activity | 2.80E-02 |
| 70 | GO:0046872: metal ion binding | 2.87E-02 |
| 71 | GO:0005198: structural molecule activity | 3.13E-02 |
| 72 | GO:0051287: NAD binding | 3.30E-02 |
| 73 | GO:0009055: electron carrier activity | 3.35E-02 |
| 74 | GO:0045330: aspartyl esterase activity | 3.83E-02 |
| 75 | GO:0004650: polygalacturonase activity | 4.29E-02 |
| 76 | GO:0030599: pectinesterase activity | 4.39E-02 |
| 77 | GO:0051082: unfolded protein binding | 4.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 7.85E-25 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 7.73E-16 |
| 4 | GO:0009579: thylakoid | 3.19E-15 |
| 5 | GO:0009570: chloroplast stroma | 5.63E-15 |
| 6 | GO:0031977: thylakoid lumen | 7.95E-12 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 1.21E-11 |
| 8 | GO:0009534: chloroplast thylakoid | 6.96E-10 |
| 9 | GO:0009941: chloroplast envelope | 5.98E-09 |
| 10 | GO:0046658: anchored component of plasma membrane | 2.82E-06 |
| 11 | GO:0031225: anchored component of membrane | 4.79E-05 |
| 12 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.31E-04 |
| 13 | GO:0009923: fatty acid elongase complex | 1.31E-04 |
| 14 | GO:0009528: plastid inner membrane | 4.99E-04 |
| 15 | GO:0009509: chromoplast | 4.99E-04 |
| 16 | GO:0009317: acetyl-CoA carboxylase complex | 4.99E-04 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 5.12E-04 |
| 18 | GO:0005840: ribosome | 5.47E-04 |
| 19 | GO:0009532: plastid stroma | 5.61E-04 |
| 20 | GO:0048046: apoplast | 6.07E-04 |
| 21 | GO:0031969: chloroplast membrane | 6.63E-04 |
| 22 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 7.14E-04 |
| 23 | GO:0005618: cell wall | 7.48E-04 |
| 24 | GO:0009527: plastid outer membrane | 9.47E-04 |
| 25 | GO:0009526: plastid envelope | 9.47E-04 |
| 26 | GO:0019898: extrinsic component of membrane | 1.04E-03 |
| 27 | GO:0055035: plastid thylakoid membrane | 1.20E-03 |
| 28 | GO:0009533: chloroplast stromal thylakoid | 2.06E-03 |
| 29 | GO:0000148: 1,3-beta-D-glucan synthase complex | 2.73E-03 |
| 30 | GO:0009505: plant-type cell wall | 3.06E-03 |
| 31 | GO:0045298: tubulin complex | 3.08E-03 |
| 32 | GO:0009508: plastid chromosome | 5.08E-03 |
| 33 | GO:0043234: protein complex | 6.43E-03 |
| 34 | GO:0042651: thylakoid membrane | 7.40E-03 |
| 35 | GO:0015935: small ribosomal subunit | 7.91E-03 |
| 36 | GO:0010319: stromule | 1.55E-02 |
| 37 | GO:0009295: nucleoid | 1.55E-02 |
| 38 | GO:0005778: peroxisomal membrane | 1.55E-02 |
| 39 | GO:0016020: membrane | 1.87E-02 |
| 40 | GO:0009707: chloroplast outer membrane | 2.03E-02 |
| 41 | GO:0015934: large ribosomal subunit | 2.25E-02 |
| 42 | GO:0016021: integral component of membrane | 2.54E-02 |
| 43 | GO:0005576: extracellular region | 3.30E-02 |
| 44 | GO:0009536: plastid | 4.04E-02 |
| 45 | GO:0009706: chloroplast inner membrane | 4.58E-02 |