Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G34010

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0033231: carbohydrate export0.00E+00
3GO:2000121: regulation of removal of superoxide radicals0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0097164: ammonium ion metabolic process0.00E+00
8GO:0042820: vitamin B6 catabolic process0.00E+00
9GO:1905499: trichome papilla formation0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
12GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
13GO:0006412: translation2.64E-12
14GO:0015995: chlorophyll biosynthetic process6.63E-12
15GO:0032544: plastid translation1.29E-11
16GO:0042254: ribosome biogenesis1.57E-08
17GO:0010027: thylakoid membrane organization1.92E-07
18GO:0006782: protoporphyrinogen IX biosynthetic process8.52E-07
19GO:0015979: photosynthesis9.19E-07
20GO:0009735: response to cytokinin2.32E-06
21GO:0009658: chloroplast organization2.60E-06
22GO:0090391: granum assembly1.94E-05
23GO:0006783: heme biosynthetic process2.29E-05
24GO:0042335: cuticle development2.42E-05
25GO:0010207: photosystem II assembly9.31E-05
26GO:0031365: N-terminal protein amino acid modification1.19E-04
27GO:1901259: chloroplast rRNA processing2.33E-04
28GO:0009772: photosynthetic electron transport in photosystem II3.02E-04
29GO:0010196: nonphotochemical quenching3.02E-04
30GO:0034337: RNA folding3.50E-04
31GO:1902334: fructose export from vacuole to cytoplasm3.50E-04
32GO:0015755: fructose transport3.50E-04
33GO:0009443: pyridoxal 5'-phosphate salvage3.50E-04
34GO:1904966: positive regulation of vitamin E biosynthetic process3.50E-04
35GO:1904964: positive regulation of phytol biosynthetic process3.50E-04
36GO:0042371: vitamin K biosynthetic process3.50E-04
37GO:0043686: co-translational protein modification3.50E-04
38GO:1902458: positive regulation of stomatal opening3.50E-04
39GO:0045454: cell redox homeostasis4.24E-04
40GO:0006779: porphyrin-containing compound biosynthetic process6.60E-04
41GO:0006729: tetrahydrobiopterin biosynthetic process7.62E-04
42GO:1903426: regulation of reactive oxygen species biosynthetic process7.62E-04
43GO:0006568: tryptophan metabolic process7.62E-04
44GO:0043039: tRNA aminoacylation7.62E-04
45GO:1902326: positive regulation of chlorophyll biosynthetic process7.62E-04
46GO:0070981: L-asparagine biosynthetic process7.62E-04
47GO:0080183: response to photooxidative stress7.62E-04
48GO:0006529: asparagine biosynthetic process7.62E-04
49GO:0009773: photosynthetic electron transport in photosystem I8.86E-04
50GO:0045037: protein import into chloroplast stroma1.01E-03
51GO:0015714: phosphoenolpyruvate transport1.23E-03
52GO:0006518: peptide metabolic process1.23E-03
53GO:0051604: protein maturation1.23E-03
54GO:0071492: cellular response to UV-A1.23E-03
55GO:0006760: folic acid-containing compound metabolic process1.23E-03
56GO:0019344: cysteine biosynthetic process1.78E-03
57GO:0006633: fatty acid biosynthetic process1.78E-03
58GO:0006241: CTP biosynthetic process1.78E-03
59GO:0009052: pentose-phosphate shunt, non-oxidative branch1.78E-03
60GO:0010731: protein glutathionylation1.78E-03
61GO:0006165: nucleoside diphosphate phosphorylation1.78E-03
62GO:0006228: UTP biosynthetic process1.78E-03
63GO:0050482: arachidonic acid secretion1.78E-03
64GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.78E-03
65GO:2001141: regulation of RNA biosynthetic process1.78E-03
66GO:0051260: protein homooligomerization2.16E-03
67GO:0015976: carbon utilization2.38E-03
68GO:0071486: cellular response to high light intensity2.38E-03
69GO:0006183: GTP biosynthetic process2.38E-03
70GO:2000122: negative regulation of stomatal complex development2.38E-03
71GO:0046656: folic acid biosynthetic process2.38E-03
72GO:0030007: cellular potassium ion homeostasis2.38E-03
73GO:0006021: inositol biosynthetic process2.38E-03
74GO:0015713: phosphoglycerate transport2.38E-03
75GO:0044206: UMP salvage2.38E-03
76GO:0010037: response to carbon dioxide2.38E-03
77GO:0042538: hyperosmotic salinity response2.87E-03
78GO:0006665: sphingolipid metabolic process3.05E-03
79GO:0034052: positive regulation of plant-type hypersensitive response3.05E-03
80GO:0043097: pyrimidine nucleoside salvage3.05E-03
81GO:0010236: plastoquinone biosynthetic process3.05E-03
82GO:0045038: protein import into chloroplast thylakoid membrane3.05E-03
83GO:0000413: protein peptidyl-prolyl isomerization3.27E-03
84GO:0006655: phosphatidylglycerol biosynthetic process3.76E-03
85GO:0010190: cytochrome b6f complex assembly3.76E-03
86GO:0006206: pyrimidine nucleobase metabolic process3.76E-03
87GO:0009117: nucleotide metabolic process3.76E-03
88GO:0046855: inositol phosphate dephosphorylation3.76E-03
89GO:0009646: response to absence of light3.79E-03
90GO:0009955: adaxial/abaxial pattern specification4.54E-03
91GO:0042372: phylloquinone biosynthetic process4.54E-03
92GO:0046654: tetrahydrofolate biosynthetic process4.54E-03
93GO:0009854: oxidative photosynthetic carbon pathway4.54E-03
94GO:0010555: response to mannitol4.54E-03
95GO:0032502: developmental process4.65E-03
96GO:0010444: guard mother cell differentiation5.36E-03
97GO:0006644: phospholipid metabolic process6.22E-03
98GO:0048564: photosystem I assembly6.22E-03
99GO:0009642: response to light intensity6.22E-03
100GO:0043068: positive regulation of programmed cell death6.22E-03
101GO:0042255: ribosome assembly6.22E-03
102GO:0006353: DNA-templated transcription, termination6.22E-03
103GO:0006875: cellular metal ion homeostasis6.22E-03
104GO:2000070: regulation of response to water deprivation6.22E-03
105GO:0009627: systemic acquired resistance7.04E-03
106GO:0071482: cellular response to light stimulus7.14E-03
107GO:0015996: chlorophyll catabolic process7.14E-03
108GO:0007186: G-protein coupled receptor signaling pathway7.14E-03
109GO:0009657: plastid organization7.14E-03
110GO:0017004: cytochrome complex assembly7.14E-03
111GO:0009245: lipid A biosynthetic process8.10E-03
112GO:0034765: regulation of ion transmembrane transport8.10E-03
113GO:0042761: very long-chain fatty acid biosynthetic process9.10E-03
114GO:0010119: regulation of stomatal movement9.53E-03
115GO:0006995: cellular response to nitrogen starvation1.01E-02
116GO:0019538: protein metabolic process1.01E-02
117GO:0006535: cysteine biosynthetic process from serine1.01E-02
118GO:0000038: very long-chain fatty acid metabolic process1.12E-02
119GO:0019684: photosynthesis, light reaction1.12E-02
120GO:0043085: positive regulation of catalytic activity1.12E-02
121GO:0006352: DNA-templated transcription, initiation1.12E-02
122GO:0006415: translational termination1.12E-02
123GO:0009750: response to fructose1.12E-02
124GO:0006790: sulfur compound metabolic process1.24E-02
125GO:0016024: CDP-diacylglycerol biosynthetic process1.24E-02
126GO:0009767: photosynthetic electron transport chain1.35E-02
127GO:0010628: positive regulation of gene expression1.35E-02
128GO:0050826: response to freezing1.35E-02
129GO:0008643: carbohydrate transport1.46E-02
130GO:0006541: glutamine metabolic process1.48E-02
131GO:0010020: chloroplast fission1.48E-02
132GO:0010167: response to nitrate1.60E-02
133GO:0019853: L-ascorbic acid biosynthetic process1.60E-02
134GO:0046854: phosphatidylinositol phosphorylation1.60E-02
135GO:0010025: wax biosynthetic process1.73E-02
136GO:0009116: nucleoside metabolic process1.86E-02
137GO:0000027: ribosomal large subunit assembly1.86E-02
138GO:0006418: tRNA aminoacylation for protein translation2.00E-02
139GO:0007017: microtubule-based process2.00E-02
140GO:0061077: chaperone-mediated protein folding2.13E-02
141GO:0009814: defense response, incompatible interaction2.28E-02
142GO:0042742: defense response to bacterium2.39E-02
143GO:0006012: galactose metabolic process2.42E-02
144GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.42E-02
145GO:0009411: response to UV2.42E-02
146GO:0010091: trichome branching2.57E-02
147GO:0019722: calcium-mediated signaling2.57E-02
148GO:0016117: carotenoid biosynthetic process2.72E-02
149GO:0070417: cellular response to cold2.72E-02
150GO:0080022: primary root development2.88E-02
151GO:0009741: response to brassinosteroid3.04E-02
152GO:0006662: glycerol ether metabolic process3.04E-02
153GO:0010182: sugar mediated signaling pathway3.04E-02
154GO:0015986: ATP synthesis coupled proton transport3.20E-02
155GO:0008654: phospholipid biosynthetic process3.36E-02
156GO:0006457: protein folding3.48E-02
157GO:0015031: protein transport3.57E-02
158GO:0009790: embryo development3.80E-02
159GO:1901657: glycosyl compound metabolic process3.87E-02
160GO:0009409: response to cold3.96E-02
161GO:0009567: double fertilization forming a zygote and endosperm4.04E-02
162GO:0009828: plant-type cell wall loosening4.04E-02
163GO:0010286: heat acclimation4.22E-02
164GO:0071805: potassium ion transmembrane transport4.22E-02
165GO:0007267: cell-cell signaling4.22E-02
166GO:0010029: regulation of seed germination4.77E-02
167GO:0042128: nitrate assimilation4.95E-02
RankGO TermAdjusted P value
1GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
2GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0015269: calcium-activated potassium channel activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
12GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
13GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
14GO:0004418: hydroxymethylbilane synthase activity0.00E+00
15GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
16GO:0046408: chlorophyll synthetase activity0.00E+00
17GO:0015284: fructose uniporter activity0.00E+00
18GO:0003735: structural constituent of ribosome9.87E-14
19GO:0019843: rRNA binding5.00E-13
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.41E-06
21GO:0005528: FK506 binding1.52E-04
22GO:0051920: peroxiredoxin activity2.33E-04
23GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.50E-04
24GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.50E-04
25GO:0030794: (S)-coclaurine-N-methyltransferase activity3.50E-04
26GO:0004425: indole-3-glycerol-phosphate synthase activity3.50E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.50E-04
28GO:0015121: phosphoenolpyruvate:phosphate antiporter activity3.50E-04
29GO:0004831: tyrosine-tRNA ligase activity3.50E-04
30GO:0004071: aspartate-ammonia ligase activity3.50E-04
31GO:0009374: biotin binding3.50E-04
32GO:0042586: peptide deformylase activity3.50E-04
33GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.50E-04
34GO:0015088: copper uptake transmembrane transporter activity3.50E-04
35GO:0010347: L-galactose-1-phosphate phosphatase activity3.50E-04
36GO:0016209: antioxidant activity3.80E-04
37GO:0102083: 7,8-dihydromonapterin aldolase activity7.62E-04
38GO:0052832: inositol monophosphate 3-phosphatase activity7.62E-04
39GO:0016630: protochlorophyllide reductase activity7.62E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity7.62E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity7.62E-04
42GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.62E-04
43GO:0004150: dihydroneopterin aldolase activity7.62E-04
44GO:0005353: fructose transmembrane transporter activity7.62E-04
45GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity7.62E-04
46GO:0004148: dihydrolipoyl dehydrogenase activity1.23E-03
47GO:0004751: ribose-5-phosphate isomerase activity1.23E-03
48GO:0045174: glutathione dehydrogenase (ascorbate) activity1.23E-03
49GO:0070402: NADPH binding1.23E-03
50GO:0051119: sugar transmembrane transporter activity1.44E-03
51GO:0035529: NADH pyrophosphatase activity1.78E-03
52GO:0016149: translation release factor activity, codon specific1.78E-03
53GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.78E-03
54GO:0016851: magnesium chelatase activity1.78E-03
55GO:0004550: nucleoside diphosphate kinase activity1.78E-03
56GO:0008097: 5S rRNA binding1.78E-03
57GO:0043424: protein histidine kinase binding1.96E-03
58GO:0001053: plastid sigma factor activity2.38E-03
59GO:0004845: uracil phosphoribosyltransferase activity2.38E-03
60GO:0004045: aminoacyl-tRNA hydrolase activity2.38E-03
61GO:0016987: sigma factor activity2.38E-03
62GO:0043495: protein anchor2.38E-03
63GO:0015120: phosphoglycerate transmembrane transporter activity2.38E-03
64GO:0004659: prenyltransferase activity2.38E-03
65GO:0022891: substrate-specific transmembrane transporter activity2.57E-03
66GO:0009922: fatty acid elongase activity3.05E-03
67GO:0003959: NADPH dehydrogenase activity3.05E-03
68GO:0030414: peptidase inhibitor activity3.05E-03
69GO:0004623: phospholipase A2 activity3.05E-03
70GO:0004040: amidase activity3.05E-03
71GO:0003989: acetyl-CoA carboxylase activity3.05E-03
72GO:0015271: outward rectifier potassium channel activity3.76E-03
73GO:0004605: phosphatidate cytidylyltransferase activity3.76E-03
74GO:0080030: methyl indole-3-acetate esterase activity3.76E-03
75GO:0031177: phosphopantetheine binding3.76E-03
76GO:0016462: pyrophosphatase activity3.76E-03
77GO:0004601: peroxidase activity4.01E-03
78GO:0004124: cysteine synthase activity4.54E-03
79GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.54E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.54E-03
81GO:0051753: mannan synthase activity4.54E-03
82GO:0004849: uridine kinase activity4.54E-03
83GO:0000035: acyl binding4.54E-03
84GO:0015035: protein disulfide oxidoreductase activity5.12E-03
85GO:0008235: metalloexopeptidase activity5.36E-03
86GO:0019899: enzyme binding5.36E-03
87GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process6.22E-03
88GO:0004034: aldose 1-epimerase activity6.22E-03
89GO:0004033: aldo-keto reductase (NADP) activity6.22E-03
90GO:0016168: chlorophyll binding6.66E-03
91GO:0005267: potassium channel activity7.14E-03
92GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.10E-03
93GO:0003747: translation release factor activity8.10E-03
94GO:0005381: iron ion transmembrane transporter activity9.10E-03
95GO:0008047: enzyme activator activity1.01E-02
96GO:0008794: arsenate reductase (glutaredoxin) activity1.12E-02
97GO:0004177: aminopeptidase activity1.12E-02
98GO:0004089: carbonate dehydratase activity1.35E-02
99GO:0031072: heat shock protein binding1.35E-02
100GO:0051537: 2 iron, 2 sulfur cluster binding1.46E-02
101GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.73E-02
102GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.73E-02
103GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.73E-02
104GO:0005216: ion channel activity2.00E-02
105GO:0005509: calcium ion binding2.09E-02
106GO:0004176: ATP-dependent peptidase activity2.13E-02
107GO:0008514: organic anion transmembrane transporter activity2.57E-02
108GO:0003727: single-stranded RNA binding2.57E-02
109GO:0004812: aminoacyl-tRNA ligase activity2.72E-02
110GO:0047134: protein-disulfide reductase activity2.72E-02
111GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.04E-02
112GO:0004791: thioredoxin-disulfide reductase activity3.20E-02
113GO:0016853: isomerase activity3.20E-02
114GO:0016762: xyloglucan:xyloglucosyl transferase activity3.53E-02
115GO:0030170: pyridoxal phosphate binding3.61E-02
116GO:0016491: oxidoreductase activity3.78E-02
117GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.87E-02
118GO:0009055: electron carrier activity4.01E-02
119GO:0008483: transaminase activity4.22E-02
120GO:0016722: oxidoreductase activity, oxidizing metal ions4.22E-02
121GO:0008237: metallopeptidase activity4.22E-02
122GO:0005200: structural constituent of cytoskeleton4.22E-02
123GO:0015297: antiporter activity4.28E-02
124GO:0016597: amino acid binding4.40E-02
125GO:0003723: RNA binding4.51E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast2.72E-70
4GO:0009570: chloroplast stroma5.81E-52
5GO:0009941: chloroplast envelope1.15E-42
6GO:0009535: chloroplast thylakoid membrane2.64E-35
7GO:0009579: thylakoid5.20E-23
8GO:0005840: ribosome1.15E-17
9GO:0009543: chloroplast thylakoid lumen1.45E-17
10GO:0009534: chloroplast thylakoid1.54E-16
11GO:0031977: thylakoid lumen2.20E-12
12GO:0009654: photosystem II oxygen evolving complex1.99E-07
13GO:0009536: plastid2.65E-05
14GO:0019898: extrinsic component of membrane3.77E-05
15GO:0048046: apoplast1.41E-04
16GO:0009532: plastid stroma2.01E-04
17GO:0031969: chloroplast membrane2.90E-04
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.50E-04
19GO:0009923: fatty acid elongase complex3.50E-04
20GO:0009344: nitrite reductase complex [NAD(P)H]3.50E-04
21GO:0010319: stromule7.18E-04
22GO:0000311: plastid large ribosomal subunit1.01E-03
23GO:0009528: plastid inner membrane1.23E-03
24GO:0010007: magnesium chelatase complex1.23E-03
25GO:0009509: chromoplast1.23E-03
26GO:0009317: acetyl-CoA carboxylase complex1.23E-03
27GO:0030095: chloroplast photosystem II1.29E-03
28GO:0042651: thylakoid membrane1.96E-03
29GO:0015935: small ribosomal subunit2.16E-03
30GO:0009527: plastid outer membrane2.38E-03
31GO:0009526: plastid envelope2.38E-03
32GO:0031897: Tic complex2.38E-03
33GO:0055035: plastid thylakoid membrane3.05E-03
34GO:0005618: cell wall3.64E-03
35GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.76E-03
36GO:0009523: photosystem II4.07E-03
37GO:0009706: chloroplast inner membrane4.93E-03
38GO:0009533: chloroplast stromal thylakoid5.36E-03
39GO:0009295: nucleoid5.61E-03
40GO:0009539: photosystem II reaction center7.14E-03
41GO:0045298: tubulin complex8.10E-03
42GO:0005763: mitochondrial small ribosomal subunit8.10E-03
43GO:0015934: large ribosomal subunit9.53E-03
44GO:0016020: membrane9.96E-03
45GO:0032040: small-subunit processome1.24E-02
46GO:0009505: plant-type cell wall1.26E-02
47GO:0009508: plastid chromosome1.35E-02
48GO:0046658: anchored component of plasma membrane1.42E-02
49GO:0031225: anchored component of membrane1.54E-02
50GO:0031410: cytoplasmic vesicle2.28E-02
51GO:0010287: plastoglobule3.09E-02
52GO:0030529: intracellular ribonucleoprotein complex4.58E-02
<
Gene type



Gene DE type