Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G33810

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:0015742: alpha-ketoglutarate transport0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0042407: cristae formation0.00E+00
7GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
8GO:0042820: vitamin B6 catabolic process0.00E+00
9GO:0097164: ammonium ion metabolic process0.00E+00
10GO:0015882: L-ascorbic acid transport0.00E+00
11GO:1905499: trichome papilla formation0.00E+00
12GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
13GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
14GO:0070125: mitochondrial translational elongation0.00E+00
15GO:0015995: chlorophyll biosynthetic process4.39E-12
16GO:0032544: plastid translation1.63E-09
17GO:0009658: chloroplast organization9.29E-09
18GO:0015979: photosynthesis6.31E-07
19GO:0006782: protoporphyrinogen IX biosynthetic process6.97E-07
20GO:0009735: response to cytokinin1.56E-06
21GO:0006353: DNA-templated transcription, termination9.98E-06
22GO:0006412: translation1.01E-05
23GO:0090391: granum assembly1.74E-05
24GO:0006783: heme biosynthetic process1.98E-05
25GO:0051085: chaperone mediated protein folding requiring cofactor3.86E-05
26GO:0006633: fatty acid biosynthetic process3.92E-05
27GO:0010027: thylakoid membrane organization7.44E-05
28GO:0042254: ribosome biogenesis1.53E-04
29GO:0006418: tRNA aminoacylation for protein translation1.55E-04
30GO:1901259: chloroplast rRNA processing2.12E-04
31GO:0009443: pyridoxal 5'-phosphate salvage3.29E-04
32GO:0006438: valyl-tRNA aminoacylation3.29E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process3.29E-04
34GO:1904964: positive regulation of phytol biosynthetic process3.29E-04
35GO:0042371: vitamin K biosynthetic process3.29E-04
36GO:0006436: tryptophanyl-tRNA aminoacylation3.29E-04
37GO:1902458: positive regulation of stomatal opening3.29E-04
38GO:0010028: xanthophyll cycle3.29E-04
39GO:0042255: ribosome assembly3.48E-04
40GO:0032502: developmental process5.06E-04
41GO:0006779: porphyrin-containing compound biosynthetic process6.05E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process7.18E-04
43GO:0070981: L-asparagine biosynthetic process7.18E-04
44GO:0006423: cysteinyl-tRNA aminoacylation7.18E-04
45GO:2000071: regulation of defense response by callose deposition7.18E-04
46GO:0080183: response to photooxidative stress7.18E-04
47GO:0006529: asparagine biosynthetic process7.18E-04
48GO:0008616: queuosine biosynthetic process7.18E-04
49GO:0006729: tetrahydrobiopterin biosynthetic process7.18E-04
50GO:1903426: regulation of reactive oxygen species biosynthetic process7.18E-04
51GO:0006568: tryptophan metabolic process7.18E-04
52GO:0043039: tRNA aminoacylation7.18E-04
53GO:0006457: protein folding8.15E-04
54GO:0045037: protein import into chloroplast stroma9.28E-04
55GO:0015714: phosphoenolpyruvate transport1.16E-03
56GO:0051604: protein maturation1.16E-03
57GO:0071492: cellular response to UV-A1.16E-03
58GO:0006760: folic acid-containing compound metabolic process1.16E-03
59GO:0010207: photosystem II assembly1.18E-03
60GO:0010020: chloroplast fission1.18E-03
61GO:0006241: CTP biosynthetic process1.67E-03
62GO:0006165: nucleoside diphosphate phosphorylation1.67E-03
63GO:0006228: UTP biosynthetic process1.67E-03
64GO:0006986: response to unfolded protein1.67E-03
65GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.67E-03
66GO:0015729: oxaloacetate transport1.67E-03
67GO:0006183: GTP biosynthetic process2.24E-03
68GO:0006221: pyrimidine nucleotide biosynthetic process2.24E-03
69GO:0046656: folic acid biosynthetic process2.24E-03
70GO:0006021: inositol biosynthetic process2.24E-03
71GO:0030007: cellular potassium ion homeostasis2.24E-03
72GO:0015713: phosphoglycerate transport2.24E-03
73GO:0044206: UMP salvage2.24E-03
74GO:0044205: 'de novo' UMP biosynthetic process2.24E-03
75GO:0019676: ammonia assimilation cycle2.24E-03
76GO:0015743: malate transport2.24E-03
77GO:0071486: cellular response to high light intensity2.24E-03
78GO:0009765: photosynthesis, light harvesting2.24E-03
79GO:0016117: carotenoid biosynthetic process2.77E-03
80GO:0071423: malate transmembrane transport2.87E-03
81GO:0016120: carotene biosynthetic process2.87E-03
82GO:0010236: plastoquinone biosynthetic process2.87E-03
83GO:0045038: protein import into chloroplast thylakoid membrane2.87E-03
84GO:0043097: pyrimidine nucleoside salvage2.87E-03
85GO:0031365: N-terminal protein amino acid modification2.87E-03
86GO:0016123: xanthophyll biosynthetic process2.87E-03
87GO:0006665: sphingolipid metabolic process2.87E-03
88GO:0042335: cuticle development3.00E-03
89GO:0006655: phosphatidylglycerol biosynthetic process3.54E-03
90GO:0006796: phosphate-containing compound metabolic process3.54E-03
91GO:0010190: cytochrome b6f complex assembly3.54E-03
92GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.54E-03
93GO:0006206: pyrimidine nucleobase metabolic process3.54E-03
94GO:0009117: nucleotide metabolic process3.54E-03
95GO:0046855: inositol phosphate dephosphorylation3.54E-03
96GO:0042372: phylloquinone biosynthetic process4.26E-03
97GO:0042026: protein refolding4.26E-03
98GO:0017148: negative regulation of translation4.26E-03
99GO:0046654: tetrahydrofolate biosynthetic process4.26E-03
100GO:0010019: chloroplast-nucleus signaling pathway4.26E-03
101GO:0010555: response to mannitol4.26E-03
102GO:0009955: adaxial/abaxial pattern specification4.26E-03
103GO:0009793: embryo development ending in seed dormancy4.97E-03
104GO:0010196: nonphotochemical quenching5.03E-03
105GO:0006400: tRNA modification5.03E-03
106GO:0006826: iron ion transport5.03E-03
107GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.03E-03
108GO:0009772: photosynthetic electron transport in photosystem II5.03E-03
109GO:0009787: regulation of abscisic acid-activated signaling pathway5.85E-03
110GO:0009642: response to light intensity5.85E-03
111GO:2000070: regulation of response to water deprivation5.85E-03
112GO:0052543: callose deposition in cell wall5.85E-03
113GO:0048564: photosystem I assembly5.85E-03
114GO:0009627: systemic acquired resistance6.44E-03
115GO:0007186: G-protein coupled receptor signaling pathway6.71E-03
116GO:0009657: plastid organization6.71E-03
117GO:0017004: cytochrome complex assembly6.71E-03
118GO:0015996: chlorophyll catabolic process6.71E-03
119GO:0042742: defense response to bacterium6.81E-03
120GO:0009790: embryo development7.14E-03
121GO:0009245: lipid A biosynthetic process7.60E-03
122GO:0034765: regulation of ion transmembrane transport7.60E-03
123GO:0098656: anion transmembrane transport7.60E-03
124GO:0042761: very long-chain fatty acid biosynthetic process8.55E-03
125GO:0031425: chloroplast RNA processing8.55E-03
126GO:0043067: regulation of programmed cell death8.55E-03
127GO:0019538: protein metabolic process9.53E-03
128GO:0045036: protein targeting to chloroplast9.53E-03
129GO:0009773: photosynthetic electron transport in photosystem I1.06E-02
130GO:0009089: lysine biosynthetic process via diaminopimelate1.06E-02
131GO:0009682: induced systemic resistance1.06E-02
132GO:0043085: positive regulation of catalytic activity1.06E-02
133GO:0006415: translational termination1.06E-02
134GO:0008380: RNA splicing1.11E-02
135GO:0016024: CDP-diacylglycerol biosynthetic process1.16E-02
136GO:0006790: sulfur compound metabolic process1.16E-02
137GO:0010628: positive regulation of gene expression1.27E-02
138GO:0009725: response to hormone1.27E-02
139GO:0006541: glutamine metabolic process1.38E-02
140GO:0010167: response to nitrate1.50E-02
141GO:0019853: L-ascorbic acid biosynthetic process1.50E-02
142GO:0010039: response to iron ion1.50E-02
143GO:0046854: phosphatidylinositol phosphorylation1.50E-02
144GO:0042538: hyperosmotic salinity response1.55E-02
145GO:0010025: wax biosynthetic process1.62E-02
146GO:0000027: ribosomal large subunit assembly1.75E-02
147GO:0019344: cysteine biosynthetic process1.75E-02
148GO:0009116: nucleoside metabolic process1.75E-02
149GO:0007017: microtubule-based process1.87E-02
150GO:0051260: protein homooligomerization2.00E-02
151GO:0061077: chaperone-mediated protein folding2.00E-02
152GO:0080167: response to karrikin2.02E-02
153GO:2000022: regulation of jasmonic acid mediated signaling pathway2.14E-02
154GO:0007005: mitochondrion organization2.14E-02
155GO:0009411: response to UV2.27E-02
156GO:0010091: trichome branching2.41E-02
157GO:0009306: protein secretion2.41E-02
158GO:0045454: cell redox homeostasis2.54E-02
159GO:0008033: tRNA processing2.70E-02
160GO:0000413: protein peptidyl-prolyl isomerization2.70E-02
161GO:0010118: stomatal movement2.70E-02
162GO:0006662: glycerol ether metabolic process2.85E-02
163GO:0010197: polar nucleus fusion2.85E-02
164GO:0010182: sugar mediated signaling pathway2.85E-02
165GO:0009741: response to brassinosteroid2.85E-02
166GO:0006814: sodium ion transport3.00E-02
167GO:0009646: response to absence of light3.00E-02
168GO:0015031: protein transport3.07E-02
169GO:0008654: phospholipid biosynthetic process3.15E-02
170GO:0002229: defense response to oomycetes3.31E-02
171GO:0010583: response to cyclopentenone3.47E-02
172GO:1901657: glycosyl compound metabolic process3.63E-02
173GO:0006413: translational initiation3.83E-02
174GO:0010286: heat acclimation3.96E-02
175GO:0071805: potassium ion transmembrane transport3.96E-02
176GO:0010029: regulation of seed germination4.47E-02
177GO:0042128: nitrate assimilation4.65E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0015269: calcium-activated potassium channel activity0.00E+00
3GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
4GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
9GO:0004418: hydroxymethylbilane synthase activity0.00E+00
10GO:0015229: L-ascorbic acid transporter activity0.00E+00
11GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
12GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
13GO:0004151: dihydroorotase activity0.00E+00
14GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
15GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
16GO:0046408: chlorophyll synthetase activity0.00E+00
17GO:0015139: alpha-ketoglutarate transmembrane transporter activity0.00E+00
18GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
19GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
20GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
21GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
22GO:0019843: rRNA binding9.52E-08
23GO:0003735: structural constituent of ribosome1.00E-06
24GO:0070402: NADPH binding1.74E-05
25GO:0016851: magnesium chelatase activity3.86E-05
26GO:0051087: chaperone binding1.55E-04
27GO:0016462: pyrophosphatase activity1.56E-04
28GO:0004812: aminoacyl-tRNA ligase activity2.86E-04
29GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.29E-04
30GO:0015121: phosphoenolpyruvate:phosphate antiporter activity3.29E-04
31GO:0004831: tyrosine-tRNA ligase activity3.29E-04
32GO:0009374: biotin binding3.29E-04
33GO:0004071: aspartate-ammonia ligase activity3.29E-04
34GO:0004832: valine-tRNA ligase activity3.29E-04
35GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.29E-04
36GO:0004830: tryptophan-tRNA ligase activity3.29E-04
37GO:0010347: L-galactose-1-phosphate phosphatase activity3.29E-04
38GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.29E-04
39GO:0030794: (S)-coclaurine-N-methyltransferase activity3.29E-04
40GO:0004425: indole-3-glycerol-phosphate synthase activity3.29E-04
41GO:0000774: adenyl-nucleotide exchange factor activity7.18E-04
42GO:0008934: inositol monophosphate 1-phosphatase activity7.18E-04
43GO:0016630: protochlorophyllide reductase activity7.18E-04
44GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.18E-04
45GO:0052833: inositol monophosphate 4-phosphatase activity7.18E-04
46GO:0004150: dihydroneopterin aldolase activity7.18E-04
47GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.18E-04
48GO:0015367: oxoglutarate:malate antiporter activity7.18E-04
49GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity7.18E-04
50GO:0102083: 7,8-dihydromonapterin aldolase activity7.18E-04
51GO:0052832: inositol monophosphate 3-phosphatase activity7.18E-04
52GO:0004312: fatty acid synthase activity7.18E-04
53GO:0004817: cysteine-tRNA ligase activity7.18E-04
54GO:0008479: queuine tRNA-ribosyltransferase activity7.18E-04
55GO:0051082: unfolded protein binding7.86E-04
56GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.16E-03
57GO:0015131: oxaloacetate transmembrane transporter activity1.67E-03
58GO:0035529: NADH pyrophosphatase activity1.67E-03
59GO:0016149: translation release factor activity, codon specific1.67E-03
60GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.67E-03
61GO:0004550: nucleoside diphosphate kinase activity1.67E-03
62GO:0043023: ribosomal large subunit binding1.67E-03
63GO:0008097: 5S rRNA binding1.67E-03
64GO:0001872: (1->3)-beta-D-glucan binding1.67E-03
65GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.67E-03
66GO:0043495: protein anchor2.24E-03
67GO:0015120: phosphoglycerate transmembrane transporter activity2.24E-03
68GO:0004659: prenyltransferase activity2.24E-03
69GO:0004845: uracil phosphoribosyltransferase activity2.24E-03
70GO:0004045: aminoacyl-tRNA hydrolase activity2.24E-03
71GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.34E-03
72GO:0022891: substrate-specific transmembrane transporter activity2.36E-03
73GO:0003727: single-stranded RNA binding2.56E-03
74GO:0009922: fatty acid elongase activity2.87E-03
75GO:0003959: NADPH dehydrogenase activity2.87E-03
76GO:0030414: peptidase inhibitor activity2.87E-03
77GO:0004040: amidase activity2.87E-03
78GO:0003989: acetyl-CoA carboxylase activity2.87E-03
79GO:0003723: RNA binding3.46E-03
80GO:0004601: peroxidase activity3.50E-03
81GO:0031177: phosphopantetheine binding3.54E-03
82GO:0015271: outward rectifier potassium channel activity3.54E-03
83GO:0004605: phosphatidate cytidylyltransferase activity3.54E-03
84GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.26E-03
85GO:0004849: uridine kinase activity4.26E-03
86GO:0000035: acyl binding4.26E-03
87GO:0004427: inorganic diphosphatase activity5.03E-03
88GO:0015140: malate transmembrane transporter activity5.03E-03
89GO:0019899: enzyme binding5.03E-03
90GO:0016831: carboxy-lyase activity5.03E-03
91GO:0008235: metalloexopeptidase activity5.03E-03
92GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process5.85E-03
93GO:0004033: aldo-keto reductase (NADP) activity5.85E-03
94GO:0016168: chlorophyll binding6.09E-03
95GO:0005267: potassium channel activity6.71E-03
96GO:0042803: protein homodimerization activity6.85E-03
97GO:0003747: translation release factor activity7.60E-03
98GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.60E-03
99GO:0008047: enzyme activator activity9.53E-03
100GO:0003746: translation elongation factor activity9.55E-03
101GO:0004177: aminopeptidase activity1.06E-02
102GO:0044183: protein binding involved in protein folding1.06E-02
103GO:0051539: 4 iron, 4 sulfur cluster binding1.09E-02
104GO:0042802: identical protein binding1.20E-02
105GO:0005315: inorganic phosphate transmembrane transporter activity1.27E-02
106GO:0031072: heat shock protein binding1.27E-02
107GO:0003690: double-stranded DNA binding1.73E-02
108GO:0005528: FK506 binding1.75E-02
109GO:0005216: ion channel activity1.87E-02
110GO:0043424: protein histidine kinase binding1.87E-02
111GO:0004176: ATP-dependent peptidase activity2.00E-02
112GO:0004650: polygalacturonase activity2.17E-02
113GO:0008514: organic anion transmembrane transporter activity2.41E-02
114GO:0015035: protein disulfide oxidoreductase activity2.45E-02
115GO:0047134: protein-disulfide reductase activity2.55E-02
116GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.85E-02
117GO:0004791: thioredoxin-disulfide reductase activity3.00E-02
118GO:0004872: receptor activity3.15E-02
119GO:0008565: protein transporter activity3.56E-02
120GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.63E-02
121GO:0015297: antiporter activity3.92E-02
122GO:0008483: transaminase activity3.96E-02
123GO:0005200: structural constituent of cytoskeleton3.96E-02
124GO:0008237: metallopeptidase activity3.96E-02
125GO:0003729: mRNA binding3.98E-02
126GO:0005525: GTP binding4.31E-02
127GO:0003743: translation initiation factor activity4.78E-02
128GO:0102483: scopolin beta-glucosidase activity4.82E-02
129GO:0030247: polysaccharide binding4.82E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast6.28E-87
2GO:0009570: chloroplast stroma2.28E-57
3GO:0009941: chloroplast envelope1.53E-38
4GO:0009535: chloroplast thylakoid membrane4.17E-27
5GO:0009579: thylakoid2.98E-26
6GO:0009543: chloroplast thylakoid lumen2.10E-10
7GO:0031977: thylakoid lumen1.80E-09
8GO:0009534: chloroplast thylakoid6.77E-09
9GO:0005840: ribosome2.14E-08
10GO:0009536: plastid5.63E-08
11GO:0009654: photosystem II oxygen evolving complex1.56E-07
12GO:0009706: chloroplast inner membrane1.13E-05
13GO:0019898: extrinsic component of membrane3.17E-05
14GO:0031969: chloroplast membrane3.72E-05
15GO:0042651: thylakoid membrane1.55E-04
16GO:0009532: plastid stroma1.78E-04
17GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.29E-04
18GO:0009515: granal stacked thylakoid3.29E-04
19GO:0009923: fatty acid elongase complex3.29E-04
20GO:0009707: chloroplast outer membrane1.04E-03
21GO:0010007: magnesium chelatase complex1.16E-03
22GO:0033281: TAT protein transport complex1.16E-03
23GO:0009317: acetyl-CoA carboxylase complex1.16E-03
24GO:0009528: plastid inner membrane1.16E-03
25GO:0015934: large ribosomal subunit1.24E-03
26GO:0005759: mitochondrial matrix1.55E-03
27GO:0009526: plastid envelope2.24E-03
28GO:0009527: plastid outer membrane2.24E-03
29GO:0055035: plastid thylakoid membrane2.87E-03
30GO:0009523: photosystem II3.72E-03
31GO:0010319: stromule5.13E-03
32GO:0022626: cytosolic ribosome5.62E-03
33GO:0030529: intracellular ribonucleoprotein complex5.76E-03
34GO:0009539: photosystem II reaction center6.71E-03
35GO:0045298: tubulin complex7.60E-03
36GO:0005763: mitochondrial small ribosomal subunit7.60E-03
37GO:0000311: plastid large ribosomal subunit1.16E-02
38GO:0009508: plastid chromosome1.27E-02
39GO:0030095: chloroplast photosystem II1.38E-02
40GO:0015935: small ribosomal subunit2.00E-02
41GO:0005623: cell3.06E-02
42GO:0048046: apoplast3.37E-02
43GO:0016592: mediator complex3.47E-02
44GO:0009295: nucleoid3.96E-02
45GO:0005778: peroxisomal membrane3.96E-02
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Gene type



Gene DE type