Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G33170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0034337: RNA folding0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0018023: peptidyl-lysine trimethylation0.00E+00
10GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0006412: translation4.85E-07
13GO:0032544: plastid translation5.13E-07
14GO:0010206: photosystem II repair8.16E-07
15GO:0009658: chloroplast organization8.96E-07
16GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.06E-06
17GO:0010275: NAD(P)H dehydrogenase complex assembly8.58E-06
18GO:0042254: ribosome biogenesis9.66E-06
19GO:0010027: thylakoid membrane organization1.21E-05
20GO:0015995: chlorophyll biosynthetic process1.82E-05
21GO:0006518: peptide metabolic process2.96E-05
22GO:0009773: photosynthetic electron transport in photosystem I8.48E-05
23GO:0006546: glycine catabolic process1.12E-04
24GO:0009767: photosynthetic electron transport chain1.27E-04
25GO:0010207: photosystem II assembly1.53E-04
26GO:0032543: mitochondrial translation1.73E-04
27GO:0042549: photosystem II stabilization2.46E-04
28GO:0006655: phosphatidylglycerol biosynthetic process2.46E-04
29GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.40E-04
30GO:0000476: maturation of 4.5S rRNA4.40E-04
31GO:0000967: rRNA 5'-end processing4.40E-04
32GO:1904966: positive regulation of vitamin E biosynthetic process4.40E-04
33GO:0010480: microsporocyte differentiation4.40E-04
34GO:0000481: maturation of 5S rRNA4.40E-04
35GO:1904964: positive regulation of phytol biosynthetic process4.40E-04
36GO:0000373: Group II intron splicing7.77E-04
37GO:0009793: embryo development ending in seed dormancy8.27E-04
38GO:1900865: chloroplast RNA modification9.15E-04
39GO:0034470: ncRNA processing9.50E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process9.50E-04
41GO:0018026: peptidyl-lysine monomethylation9.50E-04
42GO:0019684: photosynthesis, light reaction1.23E-03
43GO:0009073: aromatic amino acid family biosynthetic process1.23E-03
44GO:0055114: oxidation-reduction process1.24E-03
45GO:0016024: CDP-diacylglycerol biosynthetic process1.40E-03
46GO:0006954: inflammatory response1.55E-03
47GO:0045493: xylan catabolic process1.55E-03
48GO:2001295: malonyl-CoA biosynthetic process1.55E-03
49GO:0009052: pentose-phosphate shunt, non-oxidative branch2.24E-03
50GO:0009226: nucleotide-sugar biosynthetic process2.24E-03
51GO:0006424: glutamyl-tRNA aminoacylation2.24E-03
52GO:0016556: mRNA modification2.24E-03
53GO:0043572: plastid fission2.24E-03
54GO:0055070: copper ion homeostasis2.24E-03
55GO:2001141: regulation of RNA biosynthetic process2.24E-03
56GO:0006418: tRNA aminoacylation for protein translation2.75E-03
57GO:0019464: glycine decarboxylation via glycine cleavage system3.01E-03
58GO:0006633: fatty acid biosynthetic process3.01E-03
59GO:0015994: chlorophyll metabolic process3.01E-03
60GO:0010021: amylopectin biosynthetic process3.01E-03
61GO:0061077: chaperone-mediated protein folding3.03E-03
62GO:0015979: photosynthesis3.03E-03
63GO:0009735: response to cytokinin3.36E-03
64GO:0009451: RNA modification3.60E-03
65GO:0016123: xanthophyll biosynthetic process3.85E-03
66GO:0009247: glycolipid biosynthetic process3.85E-03
67GO:0000304: response to singlet oxygen3.85E-03
68GO:0006564: L-serine biosynthetic process3.85E-03
69GO:0035434: copper ion transmembrane transport3.85E-03
70GO:0000413: protein peptidyl-prolyl isomerization4.60E-03
71GO:0010256: endomembrane system organization4.77E-03
72GO:0016554: cytidine to uridine editing4.77E-03
73GO:0010190: cytochrome b6f complex assembly4.77E-03
74GO:0032973: amino acid export4.77E-03
75GO:0018258: protein O-linked glycosylation via hydroxyproline4.77E-03
76GO:0010405: arabinogalactan protein metabolic process4.77E-03
77GO:0006751: glutathione catabolic process4.77E-03
78GO:0006810: transport4.78E-03
79GO:0008152: metabolic process5.65E-03
80GO:0042026: protein refolding5.75E-03
81GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.75E-03
82GO:0006458: 'de novo' protein folding5.75E-03
83GO:1901259: chloroplast rRNA processing5.75E-03
84GO:0006096: glycolytic process6.03E-03
85GO:0043090: amino acid import6.80E-03
86GO:0048437: floral organ development6.80E-03
87GO:0010196: nonphotochemical quenching6.80E-03
88GO:0048564: photosystem I assembly7.91E-03
89GO:0045292: mRNA cis splicing, via spliceosome7.91E-03
90GO:0042255: ribosome assembly7.91E-03
91GO:0006353: DNA-templated transcription, termination7.91E-03
92GO:0019375: galactolipid biosynthetic process7.91E-03
93GO:0010078: maintenance of root meristem identity7.91E-03
94GO:0032508: DNA duplex unwinding7.91E-03
95GO:0071482: cellular response to light stimulus9.09E-03
96GO:0006526: arginine biosynthetic process9.09E-03
97GO:0043562: cellular response to nitrogen levels9.09E-03
98GO:0017004: cytochrome complex assembly9.09E-03
99GO:0042128: nitrate assimilation9.96E-03
100GO:0046685: response to arsenic-containing substance1.03E-02
101GO:0080144: amino acid homeostasis1.03E-02
102GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process1.16E-02
103GO:0010205: photoinhibition1.16E-02
104GO:0006779: porphyrin-containing compound biosynthetic process1.16E-02
105GO:0018298: protein-chromophore linkage1.17E-02
106GO:0045454: cell redox homeostasis1.24E-02
107GO:0009790: embryo development1.24E-02
108GO:0006782: protoporphyrinogen IX biosynthetic process1.30E-02
109GO:0043069: negative regulation of programmed cell death1.30E-02
110GO:0009684: indoleacetic acid biosynthetic process1.44E-02
111GO:0009089: lysine biosynthetic process via diaminopimelate1.44E-02
112GO:0006415: translational termination1.44E-02
113GO:0009807: lignan biosynthetic process1.44E-02
114GO:0006352: DNA-templated transcription, initiation1.44E-02
115GO:0018119: peptidyl-cysteine S-nitrosylation1.44E-02
116GO:0048229: gametophyte development1.44E-02
117GO:0009637: response to blue light1.48E-02
118GO:0005983: starch catabolic process1.58E-02
119GO:0032259: methylation1.59E-02
120GO:0030001: metal ion transport1.69E-02
121GO:0010075: regulation of meristem growth1.73E-02
122GO:0010588: cotyledon vascular tissue pattern formation1.73E-02
123GO:0030048: actin filament-based movement1.73E-02
124GO:0009934: regulation of meristem structural organization1.89E-02
125GO:0048467: gynoecium development1.89E-02
126GO:0010020: chloroplast fission1.89E-02
127GO:0010114: response to red light1.91E-02
128GO:0006636: unsaturated fatty acid biosynthetic process2.21E-02
129GO:0007010: cytoskeleton organization2.38E-02
130GO:0016575: histone deacetylation2.55E-02
131GO:0009768: photosynthesis, light harvesting in photosystem I2.55E-02
132GO:0006364: rRNA processing2.58E-02
133GO:0006508: proteolysis2.60E-02
134GO:0031408: oxylipin biosynthetic process2.73E-02
135GO:0016226: iron-sulfur cluster assembly2.91E-02
136GO:0006012: galactose metabolic process3.10E-02
137GO:0009723: response to ethylene3.20E-02
138GO:0009306: protein secretion3.29E-02
139GO:0048653: anther development3.68E-02
140GO:0080022: primary root development3.68E-02
141GO:0008033: tRNA processing3.68E-02
142GO:0010087: phloem or xylem histogenesis3.68E-02
143GO:0009958: positive gravitropism3.88E-02
144GO:0006520: cellular amino acid metabolic process3.88E-02
145GO:0048868: pollen tube development3.88E-02
146GO:0006814: sodium ion transport4.09E-02
147GO:0048825: cotyledon development4.30E-02
148GO:0019252: starch biosynthetic process4.30E-02
149GO:0009851: auxin biosynthetic process4.30E-02
150GO:0080156: mitochondrial mRNA modification4.51E-02
151GO:0002229: defense response to oomycetes4.51E-02
152GO:0000302: response to reactive oxygen species4.51E-02
153GO:0032502: developmental process4.73E-02
154GO:0030163: protein catabolic process4.94E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
4GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
5GO:0051721: protein phosphatase 2A binding0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0042903: tubulin deacetylase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
11GO:0004823: leucine-tRNA ligase activity0.00E+00
12GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
13GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
14GO:0019843: rRNA binding5.70E-18
15GO:0003735: structural constituent of ribosome1.02E-08
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.78E-08
17GO:0005528: FK506 binding3.75E-07
18GO:0002161: aminoacyl-tRNA editing activity2.96E-05
19GO:0004148: dihydrolipoyl dehydrogenase activity2.96E-05
20GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.12E-04
21GO:0008200: ion channel inhibitor activity2.46E-04
22GO:0004222: metalloendopeptidase activity2.99E-04
23GO:0051920: peroxiredoxin activity3.30E-04
24GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.30E-04
25GO:0004519: endonuclease activity4.04E-04
26GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.40E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.40E-04
28GO:0080132: fatty acid alpha-hydroxylase activity4.40E-04
29GO:0003867: 4-aminobutyrate transaminase activity4.40E-04
30GO:0045485: omega-6 fatty acid desaturase activity4.40E-04
31GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.40E-04
32GO:0016209: antioxidant activity5.32E-04
33GO:0003839: gamma-glutamylcyclotransferase activity9.50E-04
34GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.50E-04
35GO:0004617: phosphoglycerate dehydrogenase activity9.50E-04
36GO:0004047: aminomethyltransferase activity9.50E-04
37GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity9.50E-04
38GO:0033201: alpha-1,4-glucan synthase activity9.50E-04
39GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.50E-04
40GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity9.50E-04
41GO:0004802: transketolase activity9.50E-04
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.50E-04
43GO:0010283: pinoresinol reductase activity9.50E-04
44GO:0047746: chlorophyllase activity9.50E-04
45GO:0016868: intramolecular transferase activity, phosphotransferases9.50E-04
46GO:0016531: copper chaperone activity1.55E-03
47GO:0004373: glycogen (starch) synthase activity1.55E-03
48GO:0019829: cation-transporting ATPase activity1.55E-03
49GO:0004075: biotin carboxylase activity1.55E-03
50GO:0004751: ribose-5-phosphate isomerase activity1.55E-03
51GO:0030267: glyoxylate reductase (NADP) activity1.55E-03
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.55E-03
53GO:0008236: serine-type peptidase activity1.67E-03
54GO:0008097: 5S rRNA binding2.24E-03
55GO:0008508: bile acid:sodium symporter activity2.24E-03
56GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.24E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity2.24E-03
58GO:0035250: UDP-galactosyltransferase activity2.24E-03
59GO:0048487: beta-tubulin binding2.24E-03
60GO:0016149: translation release factor activity, codon specific2.24E-03
61GO:0016851: magnesium chelatase activity2.24E-03
62GO:0043023: ribosomal large subunit binding2.24E-03
63GO:0004252: serine-type endopeptidase activity2.49E-03
64GO:0003723: RNA binding2.88E-03
65GO:0001053: plastid sigma factor activity3.01E-03
66GO:0016836: hydro-lyase activity3.01E-03
67GO:0016987: sigma factor activity3.01E-03
68GO:0009011: starch synthase activity3.01E-03
69GO:0009044: xylan 1,4-beta-xylosidase activity3.01E-03
70GO:0043495: protein anchor3.01E-03
71GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.01E-03
72GO:0046556: alpha-L-arabinofuranosidase activity3.01E-03
73GO:0016279: protein-lysine N-methyltransferase activity3.01E-03
74GO:0016491: oxidoreductase activity3.70E-03
75GO:0003989: acetyl-CoA carboxylase activity3.85E-03
76GO:0016846: carbon-sulfur lyase activity3.85E-03
77GO:0004812: aminoacyl-tRNA ligase activity4.26E-03
78GO:1990714: hydroxyproline O-galactosyltransferase activity4.77E-03
79GO:0004130: cytochrome-c peroxidase activity4.77E-03
80GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.77E-03
81GO:0042578: phosphoric ester hydrolase activity4.77E-03
82GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.75E-03
83GO:0004601: peroxidase activity6.78E-03
84GO:0019899: enzyme binding6.80E-03
85GO:0004034: aldose 1-epimerase activity7.91E-03
86GO:0004033: aldo-keto reductase (NADP) activity7.91E-03
87GO:0043022: ribosome binding7.91E-03
88GO:0008237: metallopeptidase activity7.92E-03
89GO:0016597: amino acid binding8.40E-03
90GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.09E-03
91GO:0005375: copper ion transmembrane transporter activity9.09E-03
92GO:0016168: chlorophyll binding9.42E-03
93GO:0003747: translation release factor activity1.03E-02
94GO:0044183: protein binding involved in protein folding1.44E-02
95GO:0008378: galactosyltransferase activity1.58E-02
96GO:0000049: tRNA binding1.58E-02
97GO:0004565: beta-galactosidase activity1.73E-02
98GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.73E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity1.73E-02
100GO:0031072: heat shock protein binding1.73E-02
101GO:0003774: motor activity1.89E-02
102GO:0008266: poly(U) RNA binding1.89E-02
103GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.89E-02
104GO:0051537: 2 iron, 2 sulfur cluster binding2.07E-02
105GO:0031409: pigment binding2.21E-02
106GO:0051287: NAD binding2.32E-02
107GO:0004407: histone deacetylase activity2.38E-02
108GO:0051536: iron-sulfur cluster binding2.38E-02
109GO:0008168: methyltransferase activity2.54E-02
110GO:0043424: protein histidine kinase binding2.55E-02
111GO:0008324: cation transmembrane transporter activity2.55E-02
112GO:0003690: double-stranded DNA binding2.67E-02
113GO:0004176: ATP-dependent peptidase activity2.73E-02
114GO:0033612: receptor serine/threonine kinase binding2.73E-02
115GO:0016788: hydrolase activity, acting on ester bonds2.73E-02
116GO:0016787: hydrolase activity2.80E-02
117GO:0022891: substrate-specific transmembrane transporter activity3.10E-02
118GO:0003756: protein disulfide isomerase activity3.29E-02
119GO:0003727: single-stranded RNA binding3.29E-02
120GO:0051082: unfolded protein binding3.67E-02
121GO:0052689: carboxylic ester hydrolase activity3.94E-02
122GO:0016853: isomerase activity4.09E-02
123GO:0016758: transferase activity, transferring hexosyl groups4.46E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009507: chloroplast1.69E-80
3GO:0009570: chloroplast stroma4.03E-41
4GO:0009941: chloroplast envelope9.29E-39
5GO:0009534: chloroplast thylakoid4.47E-29
6GO:0009535: chloroplast thylakoid membrane3.63E-25
7GO:0009543: chloroplast thylakoid lumen1.06E-22
8GO:0009579: thylakoid6.39E-13
9GO:0031977: thylakoid lumen3.84E-10
10GO:0005840: ribosome5.34E-09
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.16E-07
12GO:0009533: chloroplast stromal thylakoid1.37E-05
13GO:0009536: plastid2.43E-05
14GO:0000311: plastid large ribosomal subunit1.05E-04
15GO:0042651: thylakoid membrane2.80E-04
16GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.40E-04
17GO:0009547: plastid ribosome4.40E-04
18GO:0043036: starch grain9.50E-04
19GO:0032040: small-subunit processome1.40E-03
20GO:0009706: chloroplast inner membrane1.50E-03
21GO:0010007: magnesium chelatase complex1.55E-03
22GO:0043231: intracellular membrane-bounded organelle1.56E-03
23GO:0030095: chloroplast photosystem II1.80E-03
24GO:0000312: plastid small ribosomal subunit1.80E-03
25GO:0010287: plastoglobule1.96E-03
26GO:0015934: large ribosomal subunit2.14E-03
27GO:0005960: glycine cleavage complex2.24E-03
28GO:0031969: chloroplast membrane2.40E-03
29GO:0009654: photosystem II oxygen evolving complex2.75E-03
30GO:0009523: photosystem II5.73E-03
31GO:0019898: extrinsic component of membrane5.73E-03
32GO:0009501: amyloplast7.91E-03
33GO:0022626: cytosolic ribosome1.20E-02
34GO:0016459: myosin complex1.30E-02
35GO:0009508: plastid chromosome1.73E-02
36GO:0030076: light-harvesting complex2.05E-02
37GO:0043234: protein complex2.21E-02
38GO:0016020: membrane2.50E-02
39GO:0015935: small ribosomal subunit2.73E-02
40GO:0009522: photosystem I4.09E-02
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Gene type



Gene DE type