Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G32220

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0017038: protein import0.00E+00
5GO:0061635: regulation of protein complex stability0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0090042: tubulin deacetylation0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I2.14E-10
9GO:0015979: photosynthesis7.45E-09
10GO:0010206: photosystem II repair4.28E-07
11GO:0015994: chlorophyll metabolic process7.06E-07
12GO:0042549: photosystem II stabilization3.06E-06
13GO:0016122: xanthophyll metabolic process5.92E-06
14GO:0006000: fructose metabolic process2.08E-05
15GO:0009735: response to cytokinin2.15E-05
16GO:0010205: photoinhibition3.33E-05
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.58E-05
18GO:0006546: glycine catabolic process8.11E-05
19GO:0006094: gluconeogenesis8.34E-05
20GO:0010207: photosystem II assembly1.00E-04
21GO:0015995: chlorophyll biosynthetic process1.30E-04
22GO:0010019: chloroplast-nucleus signaling pathway2.46E-04
23GO:0055114: oxidation-reduction process2.84E-04
24GO:0010196: nonphotochemical quenching3.19E-04
25GO:0010480: microsporocyte differentiation3.63E-04
26GO:0000481: maturation of 5S rRNA3.63E-04
27GO:0065002: intracellular protein transmembrane transport3.63E-04
28GO:0034628: 'de novo' NAD biosynthetic process from aspartate3.63E-04
29GO:0043609: regulation of carbon utilization3.63E-04
30GO:0010028: xanthophyll cycle3.63E-04
31GO:0034337: RNA folding3.63E-04
32GO:0010450: inflorescence meristem growth3.63E-04
33GO:0071588: hydrogen peroxide mediated signaling pathway3.63E-04
34GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.63E-04
35GO:0000476: maturation of 4.5S rRNA3.63E-04
36GO:0000967: rRNA 5'-end processing3.63E-04
37GO:0019646: aerobic electron transport chain3.63E-04
38GO:0043953: protein transport by the Tat complex3.63E-04
39GO:0009644: response to high light intensity4.04E-04
40GO:0032544: plastid translation4.91E-04
41GO:0006002: fructose 6-phosphate metabolic process4.91E-04
42GO:0071482: cellular response to light stimulus4.91E-04
43GO:0009657: plastid organization4.91E-04
44GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.89E-04
45GO:0030388: fructose 1,6-bisphosphate metabolic process7.89E-04
46GO:0034470: ncRNA processing7.89E-04
47GO:0009915: phloem sucrose loading7.89E-04
48GO:1900871: chloroplast mRNA modification7.89E-04
49GO:0034755: iron ion transmembrane transport7.89E-04
50GO:0006810: transport8.13E-04
51GO:0008152: metabolic process8.80E-04
52GO:0009767: photosynthetic electron transport chain1.20E-03
53GO:0018298: protein-chromophore linkage1.24E-03
54GO:0006696: ergosterol biosynthetic process1.28E-03
55GO:0051176: positive regulation of sulfur metabolic process1.28E-03
56GO:0045165: cell fate commitment1.28E-03
57GO:0006518: peptide metabolic process1.28E-03
58GO:0006013: mannose metabolic process1.28E-03
59GO:0006636: unsaturated fatty acid biosynthetic process1.69E-03
60GO:0051513: regulation of monopolar cell growth1.84E-03
61GO:0009800: cinnamic acid biosynthetic process1.84E-03
62GO:0009768: photosynthesis, light harvesting in photosystem I2.07E-03
63GO:0007623: circadian rhythm2.24E-03
64GO:0010114: response to red light2.30E-03
65GO:0006542: glutamine biosynthetic process2.47E-03
66GO:0010109: regulation of photosynthesis2.47E-03
67GO:0019676: ammonia assimilation cycle2.47E-03
68GO:0019464: glycine decarboxylation via glycine cleavage system2.47E-03
69GO:0045727: positive regulation of translation2.47E-03
70GO:0016226: iron-sulfur cluster assembly2.49E-03
71GO:0006564: L-serine biosynthetic process3.16E-03
72GO:0043097: pyrimidine nucleoside salvage3.16E-03
73GO:0045038: protein import into chloroplast thylakoid membrane3.16E-03
74GO:0006461: protein complex assembly3.16E-03
75GO:1902183: regulation of shoot apical meristem development3.16E-03
76GO:0009435: NAD biosynthetic process3.16E-03
77GO:0010158: abaxial cell fate specification3.16E-03
78GO:0009247: glycolipid biosynthetic process3.16E-03
79GO:0000741: karyogamy3.91E-03
80GO:0006354: DNA-templated transcription, elongation3.91E-03
81GO:0010304: PSII associated light-harvesting complex II catabolic process3.91E-03
82GO:0010256: endomembrane system organization3.91E-03
83GO:0000470: maturation of LSU-rRNA3.91E-03
84GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.91E-03
85GO:0006559: L-phenylalanine catabolic process3.91E-03
86GO:0006206: pyrimidine nucleobase metabolic process3.91E-03
87GO:0006096: glycolytic process4.17E-03
88GO:0000302: response to reactive oxygen species4.60E-03
89GO:0010189: vitamin E biosynthetic process4.71E-03
90GO:0009854: oxidative photosynthetic carbon pathway4.71E-03
91GO:0042372: phylloquinone biosynthetic process4.71E-03
92GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.71E-03
93GO:0030163: protein catabolic process5.24E-03
94GO:0009772: photosynthetic electron transport in photosystem II5.56E-03
95GO:0048437: floral organ development5.56E-03
96GO:1900057: positive regulation of leaf senescence5.56E-03
97GO:0009645: response to low light intensity stimulus5.56E-03
98GO:0009409: response to cold5.75E-03
99GO:0032508: DNA duplex unwinding6.46E-03
100GO:0010492: maintenance of shoot apical meristem identity6.46E-03
101GO:0048564: photosystem I assembly6.46E-03
102GO:0006402: mRNA catabolic process6.46E-03
103GO:0030091: protein repair6.46E-03
104GO:0009850: auxin metabolic process6.46E-03
105GO:0006605: protein targeting6.46E-03
106GO:0019375: galactolipid biosynthetic process6.46E-03
107GO:0010027: thylakoid membrane organization6.65E-03
108GO:0010093: specification of floral organ identity7.41E-03
109GO:0009699: phenylpropanoid biosynthetic process7.41E-03
110GO:0009932: cell tip growth7.41E-03
111GO:0042128: nitrate assimilation7.43E-03
112GO:0042744: hydrogen peroxide catabolic process8.31E-03
113GO:0000373: Group II intron splicing8.41E-03
114GO:0009060: aerobic respiration8.41E-03
115GO:0009051: pentose-phosphate shunt, oxidative branch8.41E-03
116GO:0009821: alkaloid biosynthetic process8.41E-03
117GO:0006098: pentose-phosphate shunt8.41E-03
118GO:2000024: regulation of leaf development8.41E-03
119GO:0048507: meristem development8.41E-03
120GO:0009638: phototropism9.46E-03
121GO:0010218: response to far red light9.60E-03
122GO:0034599: cellular response to oxidative stress1.16E-02
123GO:0006879: cellular iron ion homeostasis1.17E-02
124GO:0009750: response to fructose1.17E-02
125GO:0018119: peptidyl-cysteine S-nitrosylation1.17E-02
126GO:0048229: gametophyte development1.17E-02
127GO:0019684: photosynthesis, light reaction1.17E-02
128GO:0009698: phenylpropanoid metabolic process1.17E-02
129GO:0009089: lysine biosynthetic process via diaminopimelate1.17E-02
130GO:0043085: positive regulation of catalytic activity1.17E-02
131GO:0005983: starch catabolic process1.29E-02
132GO:0006631: fatty acid metabolic process1.31E-02
133GO:0006006: glucose metabolic process1.41E-02
134GO:2000028: regulation of photoperiodism, flowering1.41E-02
135GO:0018107: peptidyl-threonine phosphorylation1.41E-02
136GO:0009718: anthocyanin-containing compound biosynthetic process1.41E-02
137GO:0010075: regulation of meristem growth1.41E-02
138GO:0005986: sucrose biosynthetic process1.41E-02
139GO:0030048: actin filament-based movement1.41E-02
140GO:0019253: reductive pentose-phosphate cycle1.53E-02
141GO:0009266: response to temperature stimulus1.53E-02
142GO:0009934: regulation of meristem structural organization1.53E-02
143GO:0009933: meristem structural organization1.53E-02
144GO:0010053: root epidermal cell differentiation1.66E-02
145GO:0009793: embryo development ending in seed dormancy1.80E-02
146GO:0009658: chloroplast organization1.85E-02
147GO:0009944: polarity specification of adaxial/abaxial axis1.93E-02
148GO:0006364: rRNA processing1.93E-02
149GO:0009585: red, far-red light phototransduction1.93E-02
150GO:0006412: translation2.00E-02
151GO:0016575: histone deacetylation2.07E-02
152GO:0006418: tRNA aminoacylation for protein translation2.07E-02
153GO:0007017: microtubule-based process2.07E-02
154GO:0061077: chaperone-mediated protein folding2.22E-02
155GO:0010017: red or far-red light signaling pathway2.37E-02
156GO:0006979: response to oxidative stress2.66E-02
157GO:0016117: carotenoid biosynthetic process2.83E-02
158GO:0000413: protein peptidyl-prolyl isomerization2.99E-02
159GO:0048653: anther development2.99E-02
160GO:0042631: cellular response to water deprivation2.99E-02
161GO:0045454: cell redox homeostasis3.04E-02
162GO:0010197: polar nucleus fusion3.16E-02
163GO:0009958: positive gravitropism3.16E-02
164GO:0010154: fruit development3.16E-02
165GO:0009646: response to absence of light3.32E-02
166GO:0009058: biosynthetic process3.62E-02
167GO:0002229: defense response to oomycetes3.67E-02
168GO:0032259: methylation3.73E-02
169GO:0010583: response to cyclopentenone3.84E-02
170GO:0010090: trichome morphogenesis4.02E-02
171GO:0009567: double fertilization forming a zygote and endosperm4.20E-02
172GO:0006633: fatty acid biosynthetic process4.31E-02
173GO:0071805: potassium ion transmembrane transport4.39E-02
174GO:0001666: response to hypoxia4.76E-02
175GO:0009451: RNA modification4.83E-02
RankGO TermAdjusted P value
1GO:0046905: phytoene synthase activity0.00E+00
2GO:0008465: glycerate dehydrogenase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
7GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
8GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
9GO:0046422: violaxanthin de-epoxidase activity0.00E+00
10GO:0008987: quinolinate synthetase A activity0.00E+00
11GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
12GO:0051721: protein phosphatase 2A binding0.00E+00
13GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
14GO:0009976: tocopherol cyclase activity0.00E+00
15GO:0042903: tubulin deacetylase activity0.00E+00
16GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
17GO:0043014: alpha-tubulin binding0.00E+00
18GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
19GO:0008974: phosphoribulokinase activity0.00E+00
20GO:0004822: isoleucine-tRNA ligase activity0.00E+00
21GO:0019843: rRNA binding1.68E-07
22GO:0005528: FK506 binding1.72E-07
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.06E-07
24GO:0016787: hydrolase activity1.76E-05
25GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor8.11E-05
26GO:0008266: poly(U) RNA binding1.00E-04
27GO:0004332: fructose-bisphosphate aldolase activity1.82E-04
28GO:0004130: cytochrome-c peroxidase activity1.82E-04
29GO:0051996: squalene synthase activity3.63E-04
30GO:0045485: omega-6 fatty acid desaturase activity3.63E-04
31GO:0046906: tetrapyrrole binding3.63E-04
32GO:0009496: plastoquinol--plastocyanin reductase activity3.63E-04
33GO:0052638: indole-3-butyrate beta-glucosyltransferase activity3.63E-04
34GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.63E-04
35GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.89E-04
36GO:0047746: chlorophyllase activity7.89E-04
37GO:0042389: omega-3 fatty acid desaturase activity7.89E-04
38GO:0016868: intramolecular transferase activity, phosphotransferases7.89E-04
39GO:0005094: Rho GDP-dissociation inhibitor activity7.89E-04
40GO:0009977: proton motive force dependent protein transmembrane transporter activity7.89E-04
41GO:0004617: phosphoglycerate dehydrogenase activity7.89E-04
42GO:0004047: aminomethyltransferase activity7.89E-04
43GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity7.89E-04
44GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.89E-04
45GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.89E-04
46GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.89E-04
47GO:0016168: chlorophyll binding9.51E-04
48GO:0031072: heat shock protein binding1.20E-03
49GO:0015462: ATPase-coupled protein transmembrane transporter activity1.28E-03
50GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.28E-03
51GO:0045548: phenylalanine ammonia-lyase activity1.28E-03
52GO:0002161: aminoacyl-tRNA editing activity1.28E-03
53GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.28E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity1.28E-03
55GO:0031409: pigment binding1.69E-03
56GO:0016851: magnesium chelatase activity1.84E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity1.84E-03
58GO:0035250: UDP-galactosyltransferase activity1.84E-03
59GO:0048487: beta-tubulin binding1.84E-03
60GO:0004345: glucose-6-phosphate dehydrogenase activity2.47E-03
61GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.47E-03
62GO:0051537: 2 iron, 2 sulfur cluster binding2.55E-03
63GO:0004356: glutamate-ammonia ligase activity3.16E-03
64GO:0016688: L-ascorbate peroxidase activity3.91E-03
65GO:0042578: phosphoric ester hydrolase activity3.91E-03
66GO:2001070: starch binding3.91E-03
67GO:0048038: quinone binding4.60E-03
68GO:0004559: alpha-mannosidase activity4.71E-03
69GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.71E-03
70GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.71E-03
71GO:0004849: uridine kinase activity4.71E-03
72GO:0003735: structural constituent of ribosome4.91E-03
73GO:0019899: enzyme binding5.56E-03
74GO:0004033: aldo-keto reductase (NADP) activity6.46E-03
75GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.41E-03
76GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.41E-03
77GO:0008236: serine-type peptidase activity8.26E-03
78GO:0046872: metal ion binding8.85E-03
79GO:0016844: strictosidine synthase activity9.46E-03
80GO:0005381: iron ion transmembrane transporter activity9.46E-03
81GO:0004222: metalloendopeptidase activity9.60E-03
82GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.01E-02
83GO:0008047: enzyme activator activity1.05E-02
84GO:0003723: RNA binding1.19E-02
85GO:0000049: tRNA binding1.29E-02
86GO:0004565: beta-galactosidase activity1.41E-02
87GO:0004022: alcohol dehydrogenase (NAD) activity1.41E-02
88GO:0005515: protein binding1.42E-02
89GO:0042802: identical protein binding1.44E-02
90GO:0003774: motor activity1.53E-02
91GO:0043621: protein self-association1.55E-02
92GO:0051287: NAD binding1.73E-02
93GO:0051536: iron-sulfur cluster binding1.93E-02
94GO:0003954: NADH dehydrogenase activity1.93E-02
95GO:0004407: histone deacetylase activity1.93E-02
96GO:0015079: potassium ion transmembrane transporter activity2.07E-02
97GO:0050660: flavin adenine dinucleotide binding2.22E-02
98GO:0004707: MAP kinase activity2.22E-02
99GO:0004176: ATP-dependent peptidase activity2.22E-02
100GO:0033612: receptor serine/threonine kinase binding2.22E-02
101GO:0022891: substrate-specific transmembrane transporter activity2.52E-02
102GO:0003727: single-stranded RNA binding2.67E-02
103GO:0003756: protein disulfide isomerase activity2.67E-02
104GO:0051082: unfolded protein binding2.75E-02
105GO:0004812: aminoacyl-tRNA ligase activity2.83E-02
106GO:0016853: isomerase activity3.32E-02
107GO:0050662: coenzyme binding3.32E-02
108GO:0004252: serine-type endopeptidase activity3.81E-02
109GO:0000156: phosphorelay response regulator activity4.02E-02
110GO:0016491: oxidoreductase activity4.13E-02
111GO:0009055: electron carrier activity4.29E-02
112GO:0008237: metallopeptidase activity4.39E-02
113GO:0005200: structural constituent of cytoskeleton4.39E-02
114GO:0008483: transaminase activity4.39E-02
115GO:0016597: amino acid binding4.57E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0009507: chloroplast1.70E-61
5GO:0009535: chloroplast thylakoid membrane8.65E-39
6GO:0009534: chloroplast thylakoid1.89E-32
7GO:0009570: chloroplast stroma1.36E-31
8GO:0009941: chloroplast envelope4.76E-31
9GO:0009543: chloroplast thylakoid lumen5.78E-19
10GO:0009579: thylakoid1.39E-17
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.31E-11
12GO:0031977: thylakoid lumen1.03E-10
13GO:0030095: chloroplast photosystem II6.50E-08
14GO:0009533: chloroplast stromal thylakoid8.43E-06
15GO:0009706: chloroplast inner membrane1.69E-05
16GO:0010287: plastoglobule2.70E-05
17GO:0009523: photosystem II4.19E-05
18GO:0009654: photosystem II oxygen evolving complex1.89E-04
19GO:0000428: DNA-directed RNA polymerase complex3.63E-04
20GO:0009344: nitrite reductase complex [NAD(P)H]3.63E-04
21GO:0009547: plastid ribosome3.63E-04
22GO:0031361: integral component of thylakoid membrane3.63E-04
23GO:0009782: photosystem I antenna complex3.63E-04
24GO:0019898: extrinsic component of membrane5.10E-04
25GO:0042170: plastid membrane7.89E-04
26GO:0080085: signal recognition particle, chloroplast targeting7.89E-04
27GO:0031304: intrinsic component of mitochondrial inner membrane7.89E-04
28GO:0033281: TAT protein transport complex1.28E-03
29GO:0010007: magnesium chelatase complex1.28E-03
30GO:0048046: apoplast1.31E-03
31GO:0000312: plastid small ribosomal subunit1.36E-03
32GO:0031969: chloroplast membrane1.44E-03
33GO:0030076: light-harvesting complex1.52E-03
34GO:0005960: glycine cleavage complex1.84E-03
35GO:0042651: thylakoid membrane2.07E-03
36GO:0009512: cytochrome b6f complex3.16E-03
37GO:0005840: ribosome3.30E-03
38GO:0009522: photosystem I4.00E-03
39GO:0009295: nucleoid5.92E-03
40GO:0030529: intracellular ribonucleoprotein complex6.65E-03
41GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.41E-03
42GO:0045298: tubulin complex8.41E-03
43GO:0005763: mitochondrial small ribosomal subunit8.41E-03
44GO:0008180: COP9 signalosome8.41E-03
45GO:0042644: chloroplast nucleoid8.41E-03
46GO:0015934: large ribosomal subunit1.01E-02
47GO:0016459: myosin complex1.05E-02
48GO:0016020: membrane1.25E-02
49GO:0000311: plastid large ribosomal subunit1.29E-02
50GO:0032040: small-subunit processome1.29E-02
51GO:0009508: plastid chromosome1.41E-02
52GO:0016021: integral component of membrane4.20E-02
53GO:0010319: stromule4.39E-02
54GO:0043231: intracellular membrane-bounded organelle4.44E-02
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Gene type



Gene DE type