co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G31410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0010480: microsporocyte differentiation	2.08E-05
5	GO:0031122: cytoplasmic microtubule organization	1.95E-04
6	GO:0006552: leucine catabolic process	1.95E-04
7	GO:0006574: valine catabolic process	3.11E-04
8	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.11E-04
9	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.11E-04
10	GO:0009082: branched-chain amino acid biosynthetic process	3.73E-04
11	GO:0048437: floral organ development	4.37E-04
12	GO:0048564: photosystem I assembly	5.05E-04
13	GO:0015996: chlorophyll catabolic process	5.74E-04
14	GO:0009657: plastid organization	5.74E-04
15	GO:0010206: photosystem II repair	6.45E-04
16	GO:0048589: developmental growth	6.45E-04
17	GO:0019538: protein metabolic process	7.94E-04
18	GO:0048229: gametophyte development	8.71E-04
19	GO:0008285: negative regulation of cell proliferation	8.71E-04
20	GO:0006415: translational termination	8.71E-04
21	GO:0010152: pollen maturation	9.50E-04
22	GO:0010075: regulation of meristem growth	1.03E-03
23	GO:0010102: lateral root morphogenesis	1.03E-03
24	GO:0009934: regulation of meristem structural organization	1.11E-03
25	GO:0007010: cytoskeleton organization	1.38E-03
26	GO:0008299: isoprenoid biosynthetic process	1.47E-03
27	GO:0009658: chloroplast organization	1.58E-03
28	GO:0016226: iron-sulfur cluster assembly	1.66E-03
29	GO:0009733: response to auxin	1.72E-03
30	GO:0048443: stamen development	1.86E-03
31	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.01E-03
32	GO:0010118: stomatal movement	2.07E-03
33	GO:0048653: anther development	2.07E-03
34	GO:0071554: cell wall organization or biogenesis	2.50E-03
35	GO:0009753: response to jasmonic acid	3.05E-03
36	GO:0016310: phosphorylation	4.60E-03
37	GO:0006839: mitochondrial transport	4.93E-03
38	GO:0006396: RNA processing	8.59E-03
39	GO:0030154: cell differentiation	1.11E-02
40	GO:0009739: response to gibberellin	1.34E-02
41	GO:0005975: carbohydrate metabolic process	1.54E-02
42	GO:0046686: response to cadmium ion	1.59E-02
43	GO:0009723: response to ethylene	1.87E-02
44	GO:0048366: leaf development	1.89E-02
45	GO:0046777: protein autophosphorylation	2.06E-02
46	GO:0016042: lipid catabolic process	2.54E-02
47	GO:0009751: response to salicylic acid	2.56E-02
48	GO:0048364: root development	2.67E-02
49	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.16E-02
50	GO:0009416: response to light stimulus	3.90E-02
51	GO:0006511: ubiquitin-dependent protein catabolic process	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
3	GO:0008568: microtubule-severing ATPase activity	2.08E-05
4	GO:0034256: chlorophyll(ide) b reductase activity	2.08E-05
5	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.37E-05
6	GO:0070402: NADPH binding	9.50E-05
7	GO:0032947: protein complex scaffold	9.50E-05
8	GO:0016149: translation release factor activity, codon specific	1.42E-04
9	GO:0052656: L-isoleucine transaminase activity	1.42E-04
10	GO:0052654: L-leucine transaminase activity	1.42E-04
11	GO:0052655: L-valine transaminase activity	1.42E-04
12	GO:0010011: auxin binding	1.95E-04
13	GO:0004084: branched-chain-amino-acid transaminase activity	1.95E-04
14	GO:0042578: phosphoric ester hydrolase activity	3.11E-04
15	GO:0003747: translation release factor activity	6.45E-04
16	GO:0004565: beta-galactosidase activity	1.03E-03
17	GO:0051536: iron-sulfur cluster binding	1.38E-03
18	GO:0033612: receptor serine/threonine kinase binding	1.56E-03
19	GO:0016853: isomerase activity	2.28E-03
20	GO:0016413: O-acetyltransferase activity	3.08E-03
21	GO:0008236: serine-type peptidase activity	3.71E-03
22	GO:0016301: kinase activity	3.90E-03
23	GO:0030145: manganese ion binding	4.24E-03
24	GO:0043621: protein self-association	5.66E-03
25	GO:0005198: structural molecule activity	5.81E-03
26	GO:0004252: serine-type endopeptidase activity	1.06E-02
27	GO:0004674: protein serine/threonine kinase activity	1.12E-02
28	GO:0008017: microtubule binding	1.28E-02
29	GO:0016788: hydrolase activity, acting on ester bonds	1.71E-02
30	GO:0008233: peptidase activity	1.94E-02
31	GO:0052689: carboxylic ester hydrolase activity	2.11E-02
32	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.23E-02
33	GO:0005524: ATP binding	2.26E-02
34	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.41E-02
35	GO:0016887: ATPase activity	3.54E-02
36	GO:0030246: carbohydrate binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009570: chloroplast stroma	3.56E-03
3	GO:0009507: chloroplast	5.06E-03
4	GO:0031977: thylakoid lumen	5.07E-03
5	GO:0010287: plastoglobule	9.48E-03
6	GO:0009543: chloroplast thylakoid lumen	9.85E-03
7	GO:0005874: microtubule	1.91E-02
8	GO:0031969: chloroplast membrane	1.96E-02
9	GO:0005743: mitochondrial inner membrane	2.46E-02
10	GO:0009579: thylakoid	4.43E-02
11	GO:0009534: chloroplast thylakoid	4.46E-02