co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901698: response to nitrogen compound	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0097164: ammonium ion metabolic process	0.00E+00
4	GO:0010583: response to cyclopentenone	2.31E-06
5	GO:0006833: water transport	1.30E-05
6	GO:0042335: cuticle development	4.28E-05
7	GO:0010444: guard mother cell differentiation	6.07E-05
8	GO:0046520: sphingoid biosynthetic process	1.23E-04
9	GO:0043007: maintenance of rDNA	1.23E-04
10	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.23E-04
11	GO:0006633: fatty acid biosynthetic process	1.76E-04
12	GO:0000038: very long-chain fatty acid metabolic process	2.05E-04
13	GO:0060919: auxin influx	2.86E-04
14	GO:0070981: L-asparagine biosynthetic process	2.86E-04
15	GO:0031648: protein destabilization	2.86E-04
16	GO:0006529: asparagine biosynthetic process	2.86E-04
17	GO:0006631: fatty acid metabolic process	2.99E-04
18	GO:1902448: positive regulation of shade avoidance	4.72E-04
19	GO:0046168: glycerol-3-phosphate catabolic process	4.72E-04
20	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	4.72E-04
21	GO:0015840: urea transport	4.72E-04
22	GO:0071705: nitrogen compound transport	4.72E-04
23	GO:0006072: glycerol-3-phosphate metabolic process	6.76E-04
24	GO:0009413: response to flooding	6.76E-04
25	GO:0034220: ion transmembrane transport	7.76E-04
26	GO:0071249: cellular response to nitrate	8.97E-04
27	GO:0006183: GTP biosynthetic process	8.97E-04
28	GO:0045038: protein import into chloroplast thylakoid membrane	1.13E-03
29	GO:0042372: phylloquinone biosynthetic process	1.66E-03
30	GO:0006694: steroid biosynthetic process	1.66E-03
31	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.66E-03
32	GO:0030497: fatty acid elongation	1.95E-03
33	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.95E-03
34	GO:0007155: cell adhesion	2.26E-03
35	GO:0032544: plastid translation	2.58E-03
36	GO:0009808: lignin metabolic process	2.58E-03
37	GO:0009932: cell tip growth	2.58E-03
38	GO:0051865: protein autoubiquitination	2.91E-03
39	GO:0008643: carbohydrate transport	3.30E-03
40	GO:0055085: transmembrane transport	3.57E-03
41	GO:0006535: cysteine biosynthetic process from serine	3.62E-03
42	GO:0043069: negative regulation of programmed cell death	3.62E-03
43	GO:0048829: root cap development	3.62E-03
44	GO:0005975: carbohydrate metabolic process	3.68E-03
45	GO:0042538: hyperosmotic salinity response	3.83E-03
46	GO:0006415: translational termination	4.00E-03
47	GO:0030148: sphingolipid biosynthetic process	4.00E-03
48	GO:0045454: cell redox homeostasis	4.29E-03
49	GO:0015706: nitrate transport	4.39E-03
50	GO:0050826: response to freezing	4.79E-03
51	GO:0006541: glutamine metabolic process	5.20E-03
52	GO:0010167: response to nitrate	5.63E-03
53	GO:0009969: xyloglucan biosynthetic process	5.63E-03
54	GO:0010025: wax biosynthetic process	6.06E-03
55	GO:0051726: regulation of cell cycle	6.18E-03
56	GO:0005992: trehalose biosynthetic process	6.51E-03
57	GO:0019344: cysteine biosynthetic process	6.51E-03
58	GO:0007017: microtubule-based process	6.98E-03
59	GO:0009414: response to water deprivation	6.99E-03
60	GO:0071555: cell wall organization	7.25E-03
61	GO:0003333: amino acid transmembrane transport	7.45E-03
62	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.93E-03
63	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.43E-03
64	GO:0009734: auxin-activated signaling pathway	8.65E-03
65	GO:0019722: calcium-mediated signaling	8.93E-03
66	GO:0042127: regulation of cell proliferation	8.93E-03
67	GO:0070417: cellular response to cold	9.45E-03
68	GO:0040008: regulation of growth	9.62E-03
69	GO:0010305: leaf vascular tissue pattern formation	1.05E-02
70	GO:0009646: response to absence of light	1.11E-02
71	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.22E-02
72	GO:0071554: cell wall organization or biogenesis	1.22E-02
73	GO:0016132: brassinosteroid biosynthetic process	1.22E-02
74	GO:1901657: glycosyl compound metabolic process	1.34E-02
75	GO:0009828: plant-type cell wall loosening	1.40E-02
76	GO:0009567: double fertilization forming a zygote and endosperm	1.40E-02
77	GO:0055114: oxidation-reduction process	1.46E-02
78	GO:0007267: cell-cell signaling	1.46E-02
79	GO:0009826: unidimensional cell growth	1.51E-02
80	GO:0009658: chloroplast organization	1.56E-02
81	GO:0010027: thylakoid membrane organization	1.58E-02
82	GO:0016126: sterol biosynthetic process	1.58E-02
83	GO:0009860: pollen tube growth	1.69E-02
84	GO:0042128: nitrate assimilation	1.71E-02
85	GO:0007049: cell cycle	1.75E-02
86	GO:0010411: xyloglucan metabolic process	1.78E-02
87	GO:0016311: dephosphorylation	1.85E-02
88	GO:0009813: flavonoid biosynthetic process	1.98E-02
89	GO:0010311: lateral root formation	1.98E-02
90	GO:0000160: phosphorelay signal transduction system	1.98E-02
91	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.01E-02
92	GO:0009834: plant-type secondary cell wall biogenesis	2.05E-02
93	GO:0007568: aging	2.12E-02
94	GO:0006865: amino acid transport	2.19E-02
95	GO:0030001: metal ion transport	2.48E-02
96	GO:0006869: lipid transport	2.55E-02
97	GO:0009640: photomorphogenesis	2.71E-02
98	GO:0009926: auxin polar transport	2.71E-02
99	GO:0016042: lipid catabolic process	2.79E-02
100	GO:0042546: cell wall biogenesis	2.79E-02
101	GO:0009664: plant-type cell wall organization	3.19E-02
102	GO:0009736: cytokinin-activated signaling pathway	3.35E-02
103	GO:0006857: oligopeptide transport	3.52E-02
104	GO:0048316: seed development	3.86E-02
105	GO:0009740: gibberellic acid mediated signaling pathway	4.13E-02
106	GO:0042545: cell wall modification	4.22E-02
107	GO:0009742: brassinosteroid mediated signaling pathway	4.49E-02
108	GO:0006810: transport	4.53E-02
109	GO:0009735: response to cytokinin	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0050614: delta24-sterol reductase activity	0.00E+00
6	GO:0015250: water channel activity	1.16E-04
7	GO:0080132: fatty acid alpha-hydroxylase activity	1.23E-04
8	GO:0004071: aspartate-ammonia ligase activity	1.23E-04
9	GO:0052631: sphingolipid delta-8 desaturase activity	1.23E-04
10	GO:0009374: biotin binding	1.23E-04
11	GO:0015200: methylammonium transmembrane transporter activity	1.23E-04
12	GO:0000170: sphingosine hydroxylase activity	1.23E-04
13	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.23E-04
14	GO:0042284: sphingolipid delta-4 desaturase activity	2.86E-04
15	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	2.86E-04
16	GO:0003938: IMP dehydrogenase activity	2.86E-04
17	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.85E-04
18	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.85E-04
19	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.85E-04
20	GO:0070330: aromatase activity	4.72E-04
21	GO:0004148: dihydrolipoyl dehydrogenase activity	4.72E-04
22	GO:0005504: fatty acid binding	4.72E-04
23	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	4.72E-04
24	GO:0016149: translation release factor activity, codon specific	6.76E-04
25	GO:0004650: polygalacturonase activity	6.80E-04
26	GO:0010328: auxin influx transmembrane transporter activity	8.97E-04
27	GO:0004506: squalene monooxygenase activity	8.97E-04
28	GO:0045430: chalcone isomerase activity	8.97E-04
29	GO:0015204: urea transmembrane transporter activity	8.97E-04
30	GO:0009922: fatty acid elongase activity	1.13E-03
31	GO:0018685: alkane 1-monooxygenase activity	1.13E-03
32	GO:0003989: acetyl-CoA carboxylase activity	1.13E-03
33	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.30E-03
34	GO:0016208: AMP binding	1.39E-03
35	GO:0008519: ammonium transmembrane transporter activity	1.39E-03
36	GO:0051753: mannan synthase activity	1.66E-03
37	GO:0004124: cysteine synthase activity	1.66E-03
38	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.07E-03
39	GO:0003824: catalytic activity	2.08E-03
40	GO:0008312: 7S RNA binding	2.26E-03
41	GO:0003747: translation release factor activity	2.91E-03
42	GO:0015293: symporter activity	3.43E-03
43	GO:0004805: trehalose-phosphatase activity	3.62E-03
44	GO:0052689: carboxylic ester hydrolase activity	3.88E-03
45	GO:0008794: arsenate reductase (glutaredoxin) activity	4.00E-03
46	GO:0008378: galactosyltransferase activity	4.39E-03
47	GO:0003924: GTPase activity	5.60E-03
48	GO:0051119: sugar transmembrane transporter activity	5.63E-03
49	GO:0004857: enzyme inhibitor activity	6.51E-03
50	GO:0008514: organic anion transmembrane transporter activity	8.93E-03
51	GO:0019901: protein kinase binding	1.16E-02
52	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.22E-02
53	GO:0000156: phosphorelay response regulator activity	1.34E-02
54	GO:0005200: structural constituent of cytoskeleton	1.46E-02
55	GO:0016597: amino acid binding	1.52E-02
56	GO:0016413: O-acetyltransferase activity	1.52E-02
57	GO:0016788: hydrolase activity, acting on ester bonds	1.59E-02
58	GO:0102483: scopolin beta-glucosidase activity	1.78E-02
59	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.78E-02
60	GO:0005515: protein binding	1.80E-02
61	GO:0050660: flavin adenine dinucleotide binding	1.81E-02
62	GO:0005507: copper ion binding	1.82E-02
63	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.12E-02
64	GO:0005525: GTP binding	2.18E-02
65	GO:0003993: acid phosphatase activity	2.34E-02
66	GO:0008422: beta-glucosidase activity	2.41E-02
67	GO:0005506: iron ion binding	2.77E-02
68	GO:0043621: protein self-association	2.87E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	2.87E-02
70	GO:0009055: electron carrier activity	3.08E-02
71	GO:0051287: NAD binding	3.11E-02
72	GO:0005215: transporter activity	3.20E-02
73	GO:0015171: amino acid transmembrane transporter activity	3.60E-02
74	GO:0045330: aspartyl esterase activity	3.60E-02
75	GO:0008289: lipid binding	3.98E-02
76	GO:0046983: protein dimerization activity	4.04E-02
77	GO:0030599: pectinesterase activity	4.13E-02
78	GO:0016746: transferase activity, transferring acyl groups	4.40E-02
79	GO:0015035: protein disulfide oxidoreductase activity	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0031225: anchored component of membrane	1.68E-09
2	GO:0046658: anchored component of plasma membrane	2.18E-06
3	GO:0005576: extracellular region	8.68E-06
4	GO:0009505: plant-type cell wall	1.42E-04
5	GO:0005618: cell wall	1.62E-04
6	GO:0080085: signal recognition particle, chloroplast targeting	2.86E-04
7	GO:0009509: chromoplast	4.72E-04
8	GO:0009317: acetyl-CoA carboxylase complex	4.72E-04
9	GO:0048046: apoplast	4.90E-04
10	GO:0005886: plasma membrane	6.09E-04
11	GO:0009331: glycerol-3-phosphate dehydrogenase complex	6.76E-04
12	GO:0005773: vacuole	1.21E-03
13	GO:0005887: integral component of plasma membrane	1.65E-03
14	GO:0042807: central vacuole	1.95E-03
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.58E-03
16	GO:0000326: protein storage vacuole	2.58E-03
17	GO:0045298: tubulin complex	2.91E-03
18	GO:0016020: membrane	3.11E-03
19	GO:0005794: Golgi apparatus	3.48E-03
20	GO:0009506: plasmodesma	4.04E-03
21	GO:0005768: endosome	6.17E-03
22	GO:0005783: endoplasmic reticulum	6.78E-03
23	GO:0005789: endoplasmic reticulum membrane	1.38E-02
24	GO:0005778: peroxisomal membrane	1.46E-02
25	GO:0005774: vacuolar membrane	1.54E-02
26	GO:0016021: integral component of membrane	1.68E-02
27	GO:0009570: chloroplast stroma	1.68E-02
28	GO:0000151: ubiquitin ligase complex	1.91E-02
29	GO:0005802: trans-Golgi network	2.11E-02
30	GO:0009941: chloroplast envelope	2.59E-02
31	GO:0009536: plastid	3.64E-02
32	GO:0000139: Golgi membrane	4.10E-02