co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0009991: response to extracellular stimulus	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:0006482: protein demethylation	0.00E+00
5	GO:0048227: plasma membrane to endosome transport	0.00E+00
6	GO:0006542: glutamine biosynthetic process	2.01E-05
7	GO:0006464: cellular protein modification process	1.51E-04
8	GO:0006914: autophagy	1.51E-04
9	GO:1903648: positive regulation of chlorophyll catabolic process	1.60E-04
10	GO:0046167: glycerol-3-phosphate biosynthetic process	1.60E-04
11	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.60E-04
12	GO:0000303: response to superoxide	1.60E-04
13	GO:0080173: male-female gamete recognition during double fertilization	1.60E-04
14	GO:0009962: regulation of flavonoid biosynthetic process	1.60E-04
15	GO:0034214: protein hexamerization	1.60E-04
16	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.60E-04
17	GO:0031648: protein destabilization	3.65E-04
18	GO:0071395: cellular response to jasmonic acid stimulus	3.65E-04
19	GO:1905182: positive regulation of urease activity	3.65E-04
20	GO:0006641: triglyceride metabolic process	3.65E-04
21	GO:0019521: D-gluconate metabolic process	3.65E-04
22	GO:0006212: uracil catabolic process	3.65E-04
23	GO:0019374: galactolipid metabolic process	3.65E-04
24	GO:0030010: establishment of cell polarity	3.65E-04
25	GO:0019483: beta-alanine biosynthetic process	3.65E-04
26	GO:1902000: homogentisate catabolic process	3.65E-04
27	GO:0009072: aromatic amino acid family metabolic process	5.97E-04
28	GO:0010498: proteasomal protein catabolic process	5.97E-04
29	GO:0048586: regulation of long-day photoperiodism, flowering	5.97E-04
30	GO:0019563: glycerol catabolic process	5.97E-04
31	GO:0010359: regulation of anion channel activity	5.97E-04
32	GO:0043617: cellular response to sucrose starvation	5.97E-04
33	GO:0051603: proteolysis involved in cellular protein catabolic process	8.03E-04
34	GO:0006072: glycerol-3-phosphate metabolic process	8.53E-04
35	GO:0006809: nitric oxide biosynthetic process	8.53E-04
36	GO:0009399: nitrogen fixation	8.53E-04
37	GO:0010255: glucose mediated signaling pathway	8.53E-04
38	GO:0001676: long-chain fatty acid metabolic process	8.53E-04
39	GO:0070534: protein K63-linked ubiquitination	1.13E-03
40	GO:1903830: magnesium ion transmembrane transport	1.13E-03
41	GO:0010363: regulation of plant-type hypersensitive response	1.13E-03
42	GO:0042991: transcription factor import into nucleus	1.13E-03
43	GO:0010188: response to microbial phytotoxin	1.13E-03
44	GO:0006878: cellular copper ion homeostasis	1.13E-03
45	GO:0015031: protein transport	1.39E-03
46	GO:0030308: negative regulation of cell growth	1.43E-03
47	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.44E-03
48	GO:0010193: response to ozone	1.44E-03
49	GO:0006511: ubiquitin-dependent protein catabolic process	1.66E-03
50	GO:0006301: postreplication repair	1.76E-03
51	GO:1902456: regulation of stomatal opening	1.76E-03
52	GO:0035435: phosphate ion transmembrane transport	1.76E-03
53	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.76E-03
54	GO:0009790: embryo development	1.91E-03
55	GO:0010189: vitamin E biosynthetic process	2.11E-03
56	GO:0009816: defense response to bacterium, incompatible interaction	2.18E-03
57	GO:0042128: nitrate assimilation	2.30E-03
58	GO:0006950: response to stress	2.43E-03
59	GO:0006401: RNA catabolic process	2.48E-03
60	GO:0009610: response to symbiotic fungus	2.48E-03
61	GO:0006955: immune response	2.48E-03
62	GO:0071446: cellular response to salicylic acid stimulus	2.48E-03
63	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.48E-03
64	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	2.48E-03
65	GO:1900057: positive regulation of leaf senescence	2.48E-03
66	GO:0015693: magnesium ion transport	2.48E-03
67	GO:0006470: protein dephosphorylation	2.80E-03
68	GO:0006102: isocitrate metabolic process	2.88E-03
69	GO:0006644: phospholipid metabolic process	2.88E-03
70	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.88E-03
71	GO:0006605: protein targeting	2.88E-03
72	GO:0048527: lateral root development	3.10E-03
73	GO:0043562: cellular response to nitrogen levels	3.29E-03
74	GO:0009880: embryonic pattern specification	3.29E-03
75	GO:0030968: endoplasmic reticulum unfolded protein response	3.29E-03
76	GO:0006979: response to oxidative stress	3.40E-03
77	GO:0009867: jasmonic acid mediated signaling pathway	3.40E-03
78	GO:0006098: pentose-phosphate shunt	3.72E-03
79	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.72E-03
80	GO:0006631: fatty acid metabolic process	4.03E-03
81	GO:0048268: clathrin coat assembly	4.17E-03
82	GO:0042761: very long-chain fatty acid biosynthetic process	4.17E-03
83	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.17E-03
84	GO:2000280: regulation of root development	4.17E-03
85	GO:0016571: histone methylation	4.17E-03
86	GO:0008202: steroid metabolic process	4.17E-03
87	GO:0010629: negative regulation of gene expression	4.64E-03
88	GO:0019538: protein metabolic process	4.64E-03
89	GO:0009644: response to high light intensity	4.72E-03
90	GO:0009723: response to ethylene	4.95E-03
91	GO:0072593: reactive oxygen species metabolic process	5.12E-03
92	GO:0043085: positive regulation of catalytic activity	5.12E-03
93	GO:0012501: programmed cell death	5.62E-03
94	GO:0009736: cytokinin-activated signaling pathway	5.88E-03
95	GO:0055046: microgametogenesis	6.14E-03
96	GO:0010102: lateral root morphogenesis	6.14E-03
97	GO:0006807: nitrogen compound metabolic process	6.14E-03
98	GO:0009887: animal organ morphogenesis	6.67E-03
99	GO:0002237: response to molecule of bacterial origin	6.67E-03
100	GO:0007034: vacuolar transport	6.67E-03
101	GO:0006468: protein phosphorylation	7.11E-03
102	GO:0010053: root epidermal cell differentiation	7.22E-03
103	GO:0009626: plant-type hypersensitive response	7.40E-03
104	GO:0034976: response to endoplasmic reticulum stress	7.79E-03
105	GO:2000377: regulation of reactive oxygen species metabolic process	8.38E-03
106	GO:0016575: histone deacetylation	8.97E-03
107	GO:0061077: chaperone-mediated protein folding	9.59E-03
108	GO:0030433: ubiquitin-dependent ERAD pathway	1.02E-02
109	GO:0031348: negative regulation of defense response	1.02E-02
110	GO:0006012: galactose metabolic process	1.09E-02
111	GO:0009561: megagametogenesis	1.15E-02
112	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.22E-02
113	GO:0010118: stomatal movement	1.29E-02
114	GO:0042631: cellular response to water deprivation	1.29E-02
115	GO:0071472: cellular response to salt stress	1.36E-02
116	GO:0010154: fruit development	1.36E-02
117	GO:0010197: polar nucleus fusion	1.36E-02
118	GO:0009646: response to absence of light	1.43E-02
119	GO:0048825: cotyledon development	1.50E-02
120	GO:0071554: cell wall organization or biogenesis	1.58E-02
121	GO:0006891: intra-Golgi vesicle-mediated transport	1.58E-02
122	GO:0006635: fatty acid beta-oxidation	1.58E-02
123	GO:0007264: small GTPase mediated signal transduction	1.65E-02
124	GO:0010583: response to cyclopentenone	1.65E-02
125	GO:0016032: viral process	1.65E-02
126	GO:0009617: response to bacterium	1.73E-02
127	GO:0009911: positive regulation of flower development	2.05E-02
128	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.13E-02
129	GO:0045893: positive regulation of transcription, DNA-templated	2.19E-02
130	GO:0048573: photoperiodism, flowering	2.30E-02
131	GO:0006970: response to osmotic stress	2.42E-02
132	GO:0009817: defense response to fungus, incompatible interaction	2.47E-02
133	GO:0006351: transcription, DNA-templated	2.51E-02
134	GO:0009407: toxin catabolic process	2.65E-02
135	GO:0009651: response to salt stress	2.71E-02
136	GO:0010043: response to zinc ion	2.74E-02
137	GO:0007568: aging	2.74E-02
138	GO:0009910: negative regulation of flower development	2.74E-02
139	GO:0010119: regulation of stomatal movement	2.74E-02
140	GO:0006099: tricarboxylic acid cycle	3.02E-02
141	GO:0030001: metal ion transport	3.21E-02
142	GO:0006897: endocytosis	3.31E-02
143	GO:0042542: response to hydrogen peroxide	3.41E-02
144	GO:0009744: response to sucrose	3.51E-02
145	GO:0051707: response to other organism	3.51E-02
146	GO:0000209: protein polyubiquitination	3.61E-02
147	GO:0055114: oxidation-reduction process	3.73E-02
148	GO:0006855: drug transmembrane transport	3.91E-02
149	GO:0016042: lipid catabolic process	3.99E-02
150	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.02E-02
151	GO:0009408: response to heat	4.11E-02
152	GO:0009846: pollen germination	4.12E-02
153	GO:0042538: hyperosmotic salinity response	4.12E-02
154	GO:0048364: root development	4.28E-02
155	GO:0009414: response to water deprivation	4.29E-02
156	GO:0016310: phosphorylation	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
2	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
3	GO:0016508: long-chain-enoyl-CoA hydratase activity	0.00E+00
4	GO:0004370: glycerol kinase activity	0.00E+00
5	GO:0051723: protein methylesterase activity	0.00E+00
6	GO:0004157: dihydropyrimidinase activity	0.00E+00
7	GO:0042030: ATPase inhibitor activity	0.00E+00
8	GO:0004356: glutamate-ammonia ligase activity	3.28E-05
9	GO:0005524: ATP binding	6.49E-05
10	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	6.84E-05
11	GO:0102391: decanoate--CoA ligase activity	6.84E-05
12	GO:0004467: long-chain fatty acid-CoA ligase activity	9.14E-05
13	GO:0005515: protein binding	1.52E-04
14	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.60E-04
15	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.60E-04
16	GO:0019786: Atg8-specific protease activity	1.60E-04
17	GO:0004713: protein tyrosine kinase activity	2.55E-04
18	GO:0004566: beta-glucuronidase activity	3.65E-04
19	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	3.65E-04
20	GO:0019779: Atg8 activating enzyme activity	3.65E-04
21	GO:0019200: carbohydrate kinase activity	3.65E-04
22	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.65E-04
23	GO:0008517: folic acid transporter activity	3.65E-04
24	GO:0005093: Rab GDP-dissociation inhibitor activity	5.97E-04
25	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	5.97E-04
26	GO:0016151: nickel cation binding	5.97E-04
27	GO:0005047: signal recognition particle binding	5.97E-04
28	GO:0000975: regulatory region DNA binding	5.97E-04
29	GO:0004300: enoyl-CoA hydratase activity	8.53E-04
30	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.53E-04
31	GO:0019776: Atg8 ligase activity	1.13E-03
32	GO:0004301: epoxide hydrolase activity	1.13E-03
33	GO:0016787: hydrolase activity	1.16E-03
34	GO:0005496: steroid binding	1.43E-03
35	GO:0031386: protein tag	1.43E-03
36	GO:0047714: galactolipase activity	1.76E-03
37	GO:0036402: proteasome-activating ATPase activity	1.76E-03
38	GO:0003924: GTPase activity	1.80E-03
39	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.11E-03
40	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.11E-03
41	GO:0003978: UDP-glucose 4-epimerase activity	2.11E-03
42	GO:0004656: procollagen-proline 4-dioxygenase activity	2.11E-03
43	GO:0004143: diacylglycerol kinase activity	2.48E-03
44	GO:0004620: phospholipase activity	2.48E-03
45	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.88E-03
46	GO:0008142: oxysterol binding	3.29E-03
47	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.29E-03
48	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.29E-03
49	GO:0003951: NAD+ kinase activity	3.29E-03
50	GO:0016887: ATPase activity	3.51E-03
51	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.71E-03
52	GO:0045309: protein phosphorylated amino acid binding	4.17E-03
53	GO:0047617: acyl-CoA hydrolase activity	4.17E-03
54	GO:0005545: 1-phosphatidylinositol binding	4.64E-03
55	GO:0008559: xenobiotic-transporting ATPase activity	5.12E-03
56	GO:0008794: arsenate reductase (glutaredoxin) activity	5.12E-03
57	GO:0019904: protein domain specific binding	5.12E-03
58	GO:0061630: ubiquitin protein ligase activity	5.76E-03
59	GO:0015095: magnesium ion transmembrane transporter activity	6.14E-03
60	GO:0031072: heat shock protein binding	6.14E-03
61	GO:0005315: inorganic phosphate transmembrane transporter activity	6.14E-03
62	GO:0031625: ubiquitin protein ligase binding	6.51E-03
63	GO:0004672: protein kinase activity	6.57E-03
64	GO:0017025: TBP-class protein binding	7.22E-03
65	GO:0004722: protein serine/threonine phosphatase activity	7.64E-03
66	GO:0016301: kinase activity	7.99E-03
67	GO:0005516: calmodulin binding	8.02E-03
68	GO:0031418: L-ascorbic acid binding	8.38E-03
69	GO:0004407: histone deacetylase activity	8.38E-03
70	GO:0005528: FK506 binding	8.38E-03
71	GO:0043424: protein histidine kinase binding	8.97E-03
72	GO:0004298: threonine-type endopeptidase activity	9.59E-03
73	GO:0046873: metal ion transmembrane transporter activity	1.36E-02
74	GO:0030276: clathrin binding	1.36E-02
75	GO:0004197: cysteine-type endopeptidase activity	1.65E-02
76	GO:0004518: nuclease activity	1.65E-02
77	GO:0000166: nucleotide binding	1.84E-02
78	GO:0004674: protein serine/threonine kinase activity	1.95E-02
79	GO:0016413: O-acetyltransferase activity	1.97E-02
80	GO:0004842: ubiquitin-protein transferase activity	2.04E-02
81	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.22E-02
82	GO:0004683: calmodulin-dependent protein kinase activity	2.30E-02
83	GO:0004806: triglyceride lipase activity	2.30E-02
84	GO:0005096: GTPase activator activity	2.56E-02
85	GO:0004222: metalloendopeptidase activity	2.65E-02
86	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.93E-02
87	GO:0004364: glutathione transferase activity	3.41E-02
88	GO:0005525: GTP binding	3.42E-02
89	GO:0004871: signal transducer activity	3.50E-02
90	GO:0042803: protein homodimerization activity	3.50E-02
91	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.91E-02
92	GO:0051287: NAD binding	4.02E-02
93	GO:0009055: electron carrier activity	4.40E-02
94	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.40E-02
95	GO:0008234: cysteine-type peptidase activity	4.66E-02
96	GO:0045330: aspartyl esterase activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0019822: P4 peroxisome	0.00E+00
3	GO:0005829: cytosol	5.60E-06
4	GO:0005776: autophagosome	2.01E-05
5	GO:0005783: endoplasmic reticulum	6.60E-05
6	GO:0030139: endocytic vesicle	5.97E-04
7	GO:0005886: plasma membrane	7.75E-04
8	GO:0031410: cytoplasmic vesicle	7.98E-04
9	GO:0005775: vacuolar lumen	8.53E-04
10	GO:0031372: UBC13-MMS2 complex	1.13E-03
11	GO:0005777: peroxisome	1.24E-03
12	GO:0000164: protein phosphatase type 1 complex	1.43E-03
13	GO:0005794: Golgi apparatus	1.67E-03
14	GO:0005737: cytoplasm	1.78E-03
15	GO:0016363: nuclear matrix	2.11E-03
16	GO:0031597: cytosolic proteasome complex	2.11E-03
17	GO:0031595: nuclear proteasome complex	2.48E-03
18	GO:0000421: autophagosome membrane	2.88E-03
19	GO:0009514: glyoxysome	3.29E-03
20	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.29E-03
21	GO:0008540: proteasome regulatory particle, base subcomplex	4.17E-03
22	GO:0005765: lysosomal membrane	5.12E-03
23	GO:0048471: perinuclear region of cytoplasm	5.12E-03
24	GO:0000502: proteasome complex	5.88E-03
25	GO:0016602: CCAAT-binding factor complex	6.14E-03
26	GO:0005635: nuclear envelope	6.30E-03
27	GO:0005764: lysosome	6.67E-03
28	GO:0005795: Golgi stack	7.22E-03
29	GO:0005634: nucleus	7.59E-03
30	GO:0005839: proteasome core complex	9.59E-03
31	GO:0005905: clathrin-coated pit	9.59E-03
32	GO:0030136: clathrin-coated vesicle	1.22E-02
33	GO:0071944: cell periphery	1.73E-02
34	GO:0005773: vacuole	2.25E-02
35	GO:0005789: endoplasmic reticulum membrane	2.37E-02
36	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.47E-02
37	GO:0000325: plant-type vacuole	2.74E-02
38	GO:0005774: vacuolar membrane	2.86E-02
39	GO:0005819: spindle	3.12E-02
40	GO:0031902: late endosome membrane	3.31E-02
41	GO:0005618: cell wall	3.58E-02
42	GO:0010008: endosome membrane	4.99E-02