co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:1901698: response to nitrogen compound	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0006399: tRNA metabolic process	0.00E+00
6	GO:0006833: water transport	3.14E-10
7	GO:0034220: ion transmembrane transport	3.96E-09
8	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.07E-05
9	GO:0080170: hydrogen peroxide transmembrane transport	2.27E-05
10	GO:0006810: transport	1.55E-04
11	GO:0071588: hydrogen peroxide mediated signaling pathway	2.43E-04
12	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.43E-04
13	GO:0000476: maturation of 4.5S rRNA	2.43E-04
14	GO:0000967: rRNA 5'-end processing	2.43E-04
15	GO:0070509: calcium ion import	2.43E-04
16	GO:0007263: nitric oxide mediated signal transduction	2.43E-04
17	GO:0046520: sphingoid biosynthetic process	2.43E-04
18	GO:0010480: microsporocyte differentiation	2.43E-04
19	GO:0000481: maturation of 5S rRNA	2.43E-04
20	GO:0042547: cell wall modification involved in multidimensional cell growth	2.43E-04
21	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	2.43E-04
22	GO:0034337: RNA folding	2.43E-04
23	GO:0055085: transmembrane transport	2.82E-04
24	GO:0010583: response to cyclopentenone	2.85E-04
25	GO:0009638: phototropism	3.94E-04
26	GO:0006521: regulation of cellular amino acid metabolic process	5.39E-04
27	GO:0034470: ncRNA processing	5.39E-04
28	GO:0006695: cholesterol biosynthetic process	5.39E-04
29	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.39E-04
30	GO:0010143: cutin biosynthetic process	7.77E-04
31	GO:0006013: mannose metabolic process	8.75E-04
32	GO:0015840: urea transport	8.75E-04
33	GO:0071705: nitrogen compound transport	8.75E-04
34	GO:0051176: positive regulation of sulfur metabolic process	8.75E-04
35	GO:0007017: microtubule-based process	1.17E-03
36	GO:0051513: regulation of monopolar cell growth	1.25E-03
37	GO:0051639: actin filament network formation	1.25E-03
38	GO:0034059: response to anoxia	1.25E-03
39	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.25E-03
40	GO:2001141: regulation of RNA biosynthetic process	1.25E-03
41	GO:0051764: actin crosslink formation	1.67E-03
42	GO:0071249: cellular response to nitrate	1.67E-03
43	GO:0006183: GTP biosynthetic process	1.67E-03
44	GO:0045727: positive regulation of translation	1.67E-03
45	GO:0015994: chlorophyll metabolic process	1.67E-03
46	GO:0030104: water homeostasis	1.67E-03
47	GO:0006546: glycine catabolic process	1.67E-03
48	GO:0009435: NAD biosynthetic process	2.13E-03
49	GO:0009247: glycolipid biosynthetic process	2.13E-03
50	GO:1902456: regulation of stomatal opening	2.62E-03
51	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.62E-03
52	GO:0000741: karyogamy	2.62E-03
53	GO:0006751: glutathione catabolic process	2.62E-03
54	GO:0006694: steroid biosynthetic process	3.15E-03
55	GO:0048280: vesicle fusion with Golgi apparatus	3.15E-03
56	GO:0010019: chloroplast-nucleus signaling pathway	3.15E-03
57	GO:0030497: fatty acid elongation	3.72E-03
58	GO:0048437: floral organ development	3.72E-03
59	GO:0009645: response to low light intensity stimulus	3.72E-03
60	GO:0010444: guard mother cell differentiation	3.72E-03
61	GO:0050829: defense response to Gram-negative bacterium	3.72E-03
62	GO:0051510: regulation of unidimensional cell growth	3.72E-03
63	GO:0009651: response to salt stress	4.15E-03
64	GO:0007155: cell adhesion	4.31E-03
65	GO:0006402: mRNA catabolic process	4.31E-03
66	GO:0019375: galactolipid biosynthetic process	4.31E-03
67	GO:0032508: DNA duplex unwinding	4.31E-03
68	GO:0009231: riboflavin biosynthetic process	4.31E-03
69	GO:0010411: xyloglucan metabolic process	4.37E-03
70	GO:0018298: protein-chromophore linkage	4.83E-03
71	GO:0009932: cell tip growth	4.93E-03
72	GO:0071482: cellular response to light stimulus	4.93E-03
73	GO:0032544: plastid translation	4.93E-03
74	GO:0009808: lignin metabolic process	4.93E-03
75	GO:0007623: circadian rhythm	5.03E-03
76	GO:0045490: pectin catabolic process	5.03E-03
77	GO:0008152: metabolic process	5.19E-03
78	GO:0009051: pentose-phosphate shunt, oxidative branch	5.59E-03
79	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.59E-03
80	GO:0045337: farnesyl diphosphate biosynthetic process	5.59E-03
81	GO:0010206: photosystem II repair	5.59E-03
82	GO:0033384: geranyl diphosphate biosynthetic process	5.59E-03
83	GO:0009060: aerobic respiration	5.59E-03
84	GO:0005975: carbohydrate metabolic process	6.44E-03
85	GO:0006896: Golgi to vacuole transport	6.99E-03
86	GO:0043069: negative regulation of programmed cell death	6.99E-03
87	GO:0000038: very long-chain fatty acid metabolic process	7.73E-03
88	GO:0006352: DNA-templated transcription, initiation	7.73E-03
89	GO:0048229: gametophyte development	7.73E-03
90	GO:0010114: response to red light	7.90E-03
91	GO:0042546: cell wall biogenesis	8.22E-03
92	GO:0009826: unidimensional cell growth	8.35E-03
93	GO:0015706: nitrate transport	8.49E-03
94	GO:0016024: CDP-diacylglycerol biosynthetic process	8.49E-03
95	GO:0009644: response to high light intensity	8.55E-03
96	GO:0009767: photosynthetic electron transport chain	9.29E-03
97	GO:0006006: glucose metabolic process	9.29E-03
98	GO:2000028: regulation of photoperiodism, flowering	9.29E-03
99	GO:0050826: response to freezing	9.29E-03
100	GO:0009718: anthocyanin-containing compound biosynthetic process	9.29E-03
101	GO:0010075: regulation of meristem growth	9.29E-03
102	GO:0009735: response to cytokinin	9.33E-03
103	GO:0071555: cell wall organization	9.55E-03
104	GO:0009664: plant-type cell wall organization	9.93E-03
105	GO:0009934: regulation of meristem structural organization	1.01E-02
106	GO:0009723: response to ethylene	1.06E-02
107	GO:0009585: red, far-red light phototransduction	1.07E-02
108	GO:0010167: response to nitrate	1.10E-02
109	GO:0010030: positive regulation of seed germination	1.10E-02
110	GO:0010025: wax biosynthetic process	1.18E-02
111	GO:0006468: protein phosphorylation	1.22E-02
112	GO:0051017: actin filament bundle assembly	1.27E-02
113	GO:0005992: trehalose biosynthetic process	1.27E-02
114	GO:0009626: plant-type hypersensitive response	1.35E-02
115	GO:0015979: photosynthesis	1.37E-02
116	GO:0006418: tRNA aminoacylation for protein translation	1.37E-02
117	GO:0009768: photosynthesis, light harvesting in photosystem I	1.37E-02
118	GO:0048511: rhythmic process	1.46E-02
119	GO:0042545: cell wall modification	1.48E-02
120	GO:0010017: red or far-red light signaling pathway	1.56E-02
121	GO:0009814: defense response, incompatible interaction	1.56E-02
122	GO:0016226: iron-sulfur cluster assembly	1.56E-02
123	GO:0009742: brassinosteroid mediated signaling pathway	1.62E-02
124	GO:0006284: base-excision repair	1.76E-02
125	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.86E-02
126	GO:0042147: retrograde transport, endosome to Golgi	1.86E-02
127	GO:0048653: anther development	1.97E-02
128	GO:0042631: cellular response to water deprivation	1.97E-02
129	GO:0042335: cuticle development	1.97E-02
130	GO:0042391: regulation of membrane potential	1.97E-02
131	GO:0000413: protein peptidyl-prolyl isomerization	1.97E-02
132	GO:0010087: phloem or xylem histogenesis	1.97E-02
133	GO:0009741: response to brassinosteroid	2.07E-02
134	GO:0009958: positive gravitropism	2.07E-02
135	GO:0010305: leaf vascular tissue pattern formation	2.07E-02
136	GO:0010197: polar nucleus fusion	2.07E-02
137	GO:0007018: microtubule-based movement	2.18E-02
138	GO:0042752: regulation of circadian rhythm	2.18E-02
139	GO:0006623: protein targeting to vacuole	2.29E-02
140	GO:0009791: post-embryonic development	2.29E-02
141	GO:0006633: fatty acid biosynthetic process	2.40E-02
142	GO:0071554: cell wall organization or biogenesis	2.41E-02
143	GO:0002229: defense response to oomycetes	2.41E-02
144	GO:0000302: response to reactive oxygen species	2.41E-02
145	GO:0006891: intra-Golgi vesicle-mediated transport	2.41E-02
146	GO:0016132: brassinosteroid biosynthetic process	2.41E-02
147	GO:0030163: protein catabolic process	2.64E-02
148	GO:0071281: cellular response to iron ion	2.64E-02
149	GO:0071805: potassium ion transmembrane transport	2.88E-02
150	GO:0009414: response to water deprivation	2.95E-02
151	GO:0016126: sterol biosynthetic process	3.13E-02
152	GO:0010027: thylakoid membrane organization	3.13E-02
153	GO:0042128: nitrate assimilation	3.39E-02
154	GO:0015995: chlorophyll biosynthetic process	3.52E-02
155	GO:0006888: ER to Golgi vesicle-mediated transport	3.52E-02
156	GO:0048481: plant ovule development	3.78E-02
157	GO:0030244: cellulose biosynthetic process	3.78E-02
158	GO:0009416: response to light stimulus	3.87E-02
159	GO:0000160: phosphorelay signal transduction system	3.92E-02
160	GO:0009834: plant-type secondary cell wall biogenesis	4.05E-02
161	GO:0009407: toxin catabolic process	4.05E-02
162	GO:0010218: response to far red light	4.05E-02
163	GO:0009658: chloroplast organization	4.07E-02
164	GO:0009631: cold acclimation	4.19E-02
165	GO:0009637: response to blue light	4.48E-02
166	GO:0034599: cellular response to oxidative stress	4.62E-02
167	GO:0009409: response to cold	4.73E-02
168	GO:0030001: metal ion transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0008987: quinolinate synthetase A activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
7	GO:0015250: water channel activity	8.13E-10
8	GO:0005528: FK506 binding	7.01E-05
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.76E-04
10	GO:0000170: sphingosine hydroxylase activity	2.43E-04
11	GO:0080132: fatty acid alpha-hydroxylase activity	2.43E-04
12	GO:0015200: methylammonium transmembrane transporter activity	2.43E-04
13	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.43E-04
14	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.39E-04
15	GO:0003938: IMP dehydrogenase activity	5.39E-04
16	GO:0004047: aminomethyltransferase activity	5.39E-04
17	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.39E-04
18	GO:0042284: sphingolipid delta-4 desaturase activity	5.39E-04
19	GO:0015929: hexosaminidase activity	5.39E-04
20	GO:0004563: beta-N-acetylhexosaminidase activity	5.39E-04
21	GO:0047746: chlorophyllase activity	5.39E-04
22	GO:0016868: intramolecular transferase activity, phosphotransferases	5.39E-04
23	GO:0003839: gamma-glutamylcyclotransferase activity	5.39E-04
24	GO:0050734: hydroxycinnamoyltransferase activity	8.75E-04
25	GO:0002161: aminoacyl-tRNA editing activity	8.75E-04
26	GO:0003935: GTP cyclohydrolase II activity	8.75E-04
27	GO:0001872: (1->3)-beta-D-glucan binding	1.25E-03
28	GO:0035250: UDP-galactosyltransferase activity	1.25E-03
29	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.67E-03
30	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.67E-03
31	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.67E-03
32	GO:0016987: sigma factor activity	1.67E-03
33	GO:0004506: squalene monooxygenase activity	1.67E-03
34	GO:0015204: urea transmembrane transporter activity	1.67E-03
35	GO:0001053: plastid sigma factor activity	1.67E-03
36	GO:0008725: DNA-3-methyladenine glycosylase activity	2.13E-03
37	GO:0009922: fatty acid elongase activity	2.13E-03
38	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.57E-03
39	GO:0004130: cytochrome-c peroxidase activity	2.62E-03
40	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.62E-03
41	GO:0016688: L-ascorbate peroxidase activity	2.62E-03
42	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.62E-03
43	GO:0008519: ammonium transmembrane transporter activity	2.62E-03
44	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.15E-03
45	GO:0005261: cation channel activity	3.15E-03
46	GO:0004559: alpha-mannosidase activity	3.15E-03
47	GO:0005242: inward rectifier potassium channel activity	3.15E-03
48	GO:0005200: structural constituent of cytoskeleton	3.31E-03
49	GO:0016597: amino acid binding	3.50E-03
50	GO:0016168: chlorophyll binding	3.92E-03
51	GO:0004674: protein serine/threonine kinase activity	3.95E-03
52	GO:0004033: aldo-keto reductase (NADP) activity	4.31E-03
53	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.37E-03
54	GO:0005096: GTPase activator activity	5.08E-03
55	GO:0004337: geranyltranstransferase activity	5.59E-03
56	GO:0008047: enzyme activator activity	6.99E-03
57	GO:0004805: trehalose-phosphatase activity	6.99E-03
58	GO:0004161: dimethylallyltranstransferase activity	7.73E-03
59	GO:0000049: tRNA binding	8.49E-03
60	GO:0005262: calcium channel activity	9.29E-03
61	GO:0004565: beta-galactosidase activity	9.29E-03
62	GO:0008266: poly(U) RNA binding	1.01E-02
63	GO:0030553: cGMP binding	1.10E-02
64	GO:0008146: sulfotransferase activity	1.10E-02
65	GO:0030552: cAMP binding	1.10E-02
66	GO:0031409: pigment binding	1.18E-02
67	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.18E-02
68	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.18E-02
69	GO:0045330: aspartyl esterase activity	1.18E-02
70	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.18E-02
71	GO:0016787: hydrolase activity	1.26E-02
72	GO:0005216: ion channel activity	1.37E-02
73	GO:0015079: potassium ion transmembrane transporter activity	1.37E-02
74	GO:0004650: polygalacturonase activity	1.39E-02
75	GO:0030599: pectinesterase activity	1.43E-02
76	GO:0033612: receptor serine/threonine kinase binding	1.46E-02
77	GO:0016746: transferase activity, transferring acyl groups	1.57E-02
78	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.62E-02
79	GO:0022891: substrate-specific transmembrane transporter activity	1.66E-02
80	GO:0030570: pectate lyase activity	1.66E-02
81	GO:0003727: single-stranded RNA binding	1.76E-02
82	GO:0004672: protein kinase activity	1.85E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	1.86E-02
84	GO:0019843: rRNA binding	1.91E-02
85	GO:0030551: cyclic nucleotide binding	1.97E-02
86	GO:0016829: lyase activity	2.07E-02
87	GO:0004252: serine-type endopeptidase activity	2.12E-02
88	GO:0050662: coenzyme binding	2.18E-02
89	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.46E-02
90	GO:0046910: pectinesterase inhibitor activity	2.46E-02
91	GO:0004518: nuclease activity	2.52E-02
92	GO:0000156: phosphorelay response regulator activity	2.64E-02
93	GO:0051015: actin filament binding	2.64E-02
94	GO:0016791: phosphatase activity	2.76E-02
95	GO:0008483: transaminase activity	2.88E-02
96	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.88E-02
97	GO:0016413: O-acetyltransferase activity	3.01E-02
98	GO:0003824: catalytic activity	3.50E-02
99	GO:0030247: polysaccharide binding	3.52E-02
100	GO:0008236: serine-type peptidase activity	3.65E-02
101	GO:0015238: drug transmembrane transporter activity	3.92E-02
102	GO:0016788: hydrolase activity, acting on ester bonds	4.15E-02
103	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.19E-02
104	GO:0046872: metal ion binding	4.30E-02
105	GO:0003993: acid phosphatase activity	4.62E-02
106	GO:0050660: flavin adenine dinucleotide binding	4.70E-02
107	GO:0000149: SNARE binding	4.76E-02
108	GO:0050661: NADP binding	4.91E-02
109	GO:0051539: 4 iron, 4 sulfur cluster binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	5.90E-09
3	GO:0009507: chloroplast	9.72E-08
4	GO:0009505: plant-type cell wall	3.37E-07
5	GO:0009543: chloroplast thylakoid lumen	3.52E-07
6	GO:0009570: chloroplast stroma	2.61E-06
7	GO:0009535: chloroplast thylakoid membrane	6.38E-06
8	GO:0005886: plasma membrane	8.26E-06
9	GO:0005887: integral component of plasma membrane	1.03E-05
10	GO:0031225: anchored component of membrane	1.75E-05
11	GO:0046658: anchored component of plasma membrane	3.30E-05
12	GO:0009941: chloroplast envelope	4.16E-05
13	GO:0042807: central vacuole	1.74E-04
14	GO:0009782: photosystem I antenna complex	2.43E-04
15	GO:0043674: columella	2.43E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	2.43E-04
17	GO:0009506: plasmodesma	3.29E-04
18	GO:0045298: tubulin complex	3.32E-04
19	GO:0016020: membrane	4.38E-04
20	GO:0005618: cell wall	8.19E-04
21	GO:0031977: thylakoid lumen	9.99E-04
22	GO:0009579: thylakoid	1.00E-03
23	GO:0009654: photosystem II oxygen evolving complex	1.17E-03
24	GO:0009531: secondary cell wall	1.25E-03
25	GO:0032432: actin filament bundle	1.25E-03
26	GO:0048046: apoplast	1.81E-03
27	GO:0019898: extrinsic component of membrane	2.40E-03
28	GO:0009533: chloroplast stromal thylakoid	3.72E-03
29	GO:0012507: ER to Golgi transport vesicle membrane	4.31E-03
30	GO:0005774: vacuolar membrane	4.47E-03
31	GO:0005576: extracellular region	4.70E-03
32	GO:0005773: vacuole	4.78E-03
33	GO:0000326: protein storage vacuole	4.93E-03
34	GO:0005884: actin filament	7.73E-03
35	GO:0032040: small-subunit processome	8.49E-03
36	GO:0030095: chloroplast photosystem II	1.01E-02
37	GO:0030076: light-harvesting complex	1.10E-02
38	GO:0005874: microtubule	1.10E-02
39	GO:0010287: plastoglobule	1.81E-02
40	GO:0005871: kinesin complex	1.86E-02
41	GO:0005794: Golgi apparatus	2.23E-02
42	GO:0009523: photosystem II	2.29E-02
43	GO:0071944: cell periphery	2.64E-02
44	GO:0009705: plant-type vacuole membrane	2.64E-02
45	GO:0030529: intracellular ribonucleoprotein complex	3.13E-02
46	GO:0016021: integral component of membrane	4.01E-02
47	GO:0015934: large ribosomal subunit	4.19E-02