co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0015979: photosynthesis	7.92E-23
4	GO:0009773: photosynthetic electron transport in photosystem I	2.80E-08
5	GO:0010027: thylakoid membrane organization	6.13E-08
6	GO:0010196: nonphotochemical quenching	4.08E-07
7	GO:0090391: granum assembly	2.29E-06
8	GO:0015995: chlorophyll biosynthetic process	4.37E-06
9	GO:0009735: response to cytokinin	4.30E-05
10	GO:0042742: defense response to bacterium	4.63E-05
11	GO:0010206: photosystem II repair	1.00E-04
12	GO:1902458: positive regulation of stomatal opening	1.08E-04
13	GO:0071588: hydrogen peroxide mediated signaling pathway	1.08E-04
14	GO:0018119: peptidyl-cysteine S-nitrosylation	1.69E-04
15	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.52E-04
16	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.52E-04
17	GO:0010207: photosystem II assembly	2.55E-04
18	GO:0019253: reductive pentose-phosphate cycle	2.55E-04
19	GO:0009658: chloroplast organization	3.13E-04
20	GO:0009768: photosynthesis, light harvesting in photosystem I	3.94E-04
21	GO:0006000: fructose metabolic process	4.19E-04
22	GO:0009409: response to cold	5.29E-04
23	GO:0055070: copper ion homeostasis	6.01E-04
24	GO:0051513: regulation of monopolar cell growth	6.01E-04
25	GO:0071484: cellular response to light intensity	6.01E-04
26	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	6.01E-04
27	GO:2000122: negative regulation of stomatal complex development	7.98E-04
28	GO:0006546: glycine catabolic process	7.98E-04
29	GO:0010037: response to carbon dioxide	7.98E-04
30	GO:0015976: carbon utilization	7.98E-04
31	GO:0019464: glycine decarboxylation via glycine cleavage system	7.98E-04
32	GO:0009765: photosynthesis, light harvesting	7.98E-04
33	GO:0045727: positive regulation of translation	7.98E-04
34	GO:0032543: mitochondrial translation	1.01E-03
35	GO:0045038: protein import into chloroplast thylakoid membrane	1.01E-03
36	GO:0031365: N-terminal protein amino acid modification	1.01E-03
37	GO:0017148: negative regulation of translation	1.47E-03
38	GO:0010189: vitamin E biosynthetic process	1.47E-03
39	GO:0010019: chloroplast-nucleus signaling pathway	1.47E-03
40	GO:0010555: response to mannitol	1.47E-03
41	GO:0055114: oxidation-reduction process	1.51E-03
42	GO:0018298: protein-chromophore linkage	1.58E-03
43	GO:0009645: response to low light intensity stimulus	1.73E-03
44	GO:0009772: photosynthetic electron transport in photosystem II	1.73E-03
45	GO:0009769: photosynthesis, light harvesting in photosystem II	1.73E-03
46	GO:0010218: response to far red light	1.74E-03
47	GO:0009637: response to blue light	1.99E-03
48	GO:2000070: regulation of response to water deprivation	2.00E-03
49	GO:0009642: response to light intensity	2.00E-03
50	GO:0046620: regulation of organ growth	2.00E-03
51	GO:0042254: ribosome biogenesis	2.11E-03
52	GO:0032544: plastid translation	2.28E-03
53	GO:0006002: fructose 6-phosphate metabolic process	2.28E-03
54	GO:0015996: chlorophyll catabolic process	2.28E-03
55	GO:0007186: G-protein coupled receptor signaling pathway	2.28E-03
56	GO:0010114: response to red light	2.56E-03
57	GO:0080167: response to karrikin	2.71E-03
58	GO:0006949: syncytium formation	3.20E-03
59	GO:0045454: cell redox homeostasis	3.40E-03
60	GO:0000272: polysaccharide catabolic process	3.53E-03
61	GO:0010015: root morphogenesis	3.53E-03
62	GO:0016024: CDP-diacylglycerol biosynthetic process	3.87E-03
63	GO:0045037: protein import into chloroplast stroma	3.87E-03
64	GO:0006006: glucose metabolic process	4.23E-03
65	GO:0009725: response to hormone	4.23E-03
66	GO:0006094: gluconeogenesis	4.23E-03
67	GO:0005986: sucrose biosynthetic process	4.23E-03
68	GO:0010143: cutin biosynthetic process	4.59E-03
69	GO:0046688: response to copper ion	4.96E-03
70	GO:0006979: response to oxidative stress	5.55E-03
71	GO:0019344: cysteine biosynthetic process	5.75E-03
72	GO:0048511: rhythmic process	6.56E-03
73	GO:0061077: chaperone-mediated protein folding	6.56E-03
74	GO:0009269: response to desiccation	6.56E-03
75	GO:0042744: hydrogen peroxide catabolic process	6.92E-03
76	GO:0009411: response to UV	7.42E-03
77	GO:0006012: galactose metabolic process	7.42E-03
78	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.42E-03
79	GO:0000413: protein peptidyl-prolyl isomerization	8.79E-03
80	GO:0042631: cellular response to water deprivation	8.79E-03
81	GO:0010182: sugar mediated signaling pathway	9.26E-03
82	GO:0015986: ATP synthesis coupled proton transport	9.74E-03
83	GO:0042752: regulation of circadian rhythm	9.74E-03
84	GO:0019252: starch biosynthetic process	1.02E-02
85	GO:0000302: response to reactive oxygen species	1.07E-02
86	GO:0009828: plant-type cell wall loosening	1.23E-02
87	GO:0009627: systemic acquired resistance	1.51E-02
88	GO:0009817: defense response to fungus, incompatible interaction	1.68E-02
89	GO:0009834: plant-type secondary cell wall biogenesis	1.80E-02
90	GO:0010119: regulation of stomatal movement	1.86E-02
91	GO:0009631: cold acclimation	1.86E-02
92	GO:0016051: carbohydrate biosynthetic process	1.99E-02
93	GO:0034599: cellular response to oxidative stress	2.05E-02
94	GO:0006869: lipid transport	2.12E-02
95	GO:0030001: metal ion transport	2.18E-02
96	GO:0009926: auxin polar transport	2.38E-02
97	GO:0009744: response to sucrose	2.38E-02
98	GO:0009644: response to high light intensity	2.52E-02
99	GO:0009664: plant-type cell wall organization	2.80E-02
100	GO:0006364: rRNA processing	2.94E-02
101	GO:0006096: glycolytic process	3.32E-02
102	GO:0009740: gibberellic acid mediated signaling pathway	3.63E-02
103	GO:0005975: carbohydrate metabolic process	3.77E-02
104	GO:0009416: response to light stimulus	4.23E-02
105	GO:0009611: response to wounding	4.32E-02
106	GO:0045893: positive regulation of transcription, DNA-templated	4.84E-02
107	GO:0009790: embryo development	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
3	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
4	GO:0051738: xanthophyll binding	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0051920: peroxiredoxin activity	3.64E-05
8	GO:0016209: antioxidant activity	6.41E-05
9	GO:0016168: chlorophyll binding	9.69E-05
10	GO:0009496: plastoquinol--plastocyanin reductase activity	1.08E-04
11	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.08E-04
12	GO:0010297: heteropolysaccharide binding	2.52E-04
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.52E-04
14	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.52E-04
15	GO:0008967: phosphoglycolate phosphatase activity	2.52E-04
16	GO:0031409: pigment binding	3.21E-04
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.21E-04
18	GO:0005528: FK506 binding	3.57E-04
19	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.19E-04
20	GO:0004324: ferredoxin-NADP+ reductase activity	4.19E-04
21	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.19E-04
22	GO:0004375: glycine dehydrogenase (decarboxylating) activity	6.01E-04
23	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.01E-04
24	GO:0004659: prenyltransferase activity	7.98E-04
25	GO:0019843: rRNA binding	8.04E-04
26	GO:0003959: NADPH dehydrogenase activity	1.01E-03
27	GO:0005509: calcium ion binding	1.11E-03
28	GO:0016688: L-ascorbate peroxidase activity	1.23E-03
29	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.23E-03
30	GO:0004130: cytochrome-c peroxidase activity	1.23E-03
31	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.23E-03
32	GO:0042578: phosphoric ester hydrolase activity	1.23E-03
33	GO:0008235: metalloexopeptidase activity	1.73E-03
34	GO:0004034: aldose 1-epimerase activity	2.00E-03
35	GO:0004601: peroxidase activity	2.06E-03
36	GO:0051537: 2 iron, 2 sulfur cluster binding	2.76E-03
37	GO:0004177: aminopeptidase activity	3.53E-03
38	GO:0004089: carbonate dehydratase activity	4.23E-03
39	GO:0031072: heat shock protein binding	4.23E-03
40	GO:0004650: polygalacturonase activity	4.44E-03
41	GO:0008266: poly(U) RNA binding	4.59E-03
42	GO:0009055: electron carrier activity	4.85E-03
43	GO:0046872: metal ion binding	6.17E-03
44	GO:0030570: pectate lyase activity	7.42E-03
45	GO:0022891: substrate-specific transmembrane transporter activity	7.42E-03
46	GO:0003756: protein disulfide isomerase activity	7.87E-03
47	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.26E-03
48	GO:0050662: coenzyme binding	9.74E-03
49	GO:0016853: isomerase activity	9.74E-03
50	GO:0004872: receptor activity	1.02E-02
51	GO:0016791: phosphatase activity	1.23E-02
52	GO:0016788: hydrolase activity, acting on ester bonds	1.33E-02
53	GO:0003735: structural constituent of ribosome	1.55E-02
54	GO:0050661: NADP binding	2.18E-02
55	GO:0051287: NAD binding	2.73E-02
56	GO:0003690: double-stranded DNA binding	3.02E-02
57	GO:0008289: lipid binding	3.32E-02
58	GO:0051082: unfolded protein binding	3.78E-02
59	GO:0016746: transferase activity, transferring acyl groups	3.86E-02
60	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.52E-02
61	GO:0016829: lyase activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	9.68E-43
4	GO:0009579: thylakoid	7.19E-36
5	GO:0009507: chloroplast	2.48E-31
6	GO:0009534: chloroplast thylakoid	1.65E-30
7	GO:0009543: chloroplast thylakoid lumen	3.51E-21
8	GO:0009941: chloroplast envelope	6.13E-19
9	GO:0031977: thylakoid lumen	4.09E-16
10	GO:0009570: chloroplast stroma	6.94E-13
11	GO:0030095: chloroplast photosystem II	5.69E-10
12	GO:0009654: photosystem II oxygen evolving complex	2.07E-09
13	GO:0010287: plastoglobule	4.85E-09
14	GO:0019898: extrinsic component of membrane	1.77E-08
15	GO:0010319: stromule	4.42E-08
16	GO:0048046: apoplast	1.88E-07
17	GO:0030093: chloroplast photosystem I	6.05E-07
18	GO:0009517: PSII associated light-harvesting complex II	1.03E-05
19	GO:0009522: photosystem I	4.07E-05
20	GO:0009523: photosystem II	4.56E-05
21	GO:0009538: photosystem I reaction center	6.41E-05
22	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.52E-04
23	GO:0030076: light-harvesting complex	2.87E-04
24	GO:0009528: plastid inner membrane	4.19E-04
25	GO:0005960: glycine cleavage complex	6.01E-04
26	GO:0009527: plastid outer membrane	7.98E-04
27	GO:0055035: plastid thylakoid membrane	1.01E-03
28	GO:0009512: cytochrome b6f complex	1.01E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.23E-03
30	GO:0005840: ribosome	1.39E-03
31	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.57E-03
32	GO:0009508: plastid chromosome	4.23E-03
33	GO:0009706: chloroplast inner membrane	4.86E-03
34	GO:0042651: thylakoid membrane	6.15E-03
35	GO:0015935: small ribosomal subunit	6.56E-03
36	GO:0009532: plastid stroma	6.56E-03
37	GO:0009505: plant-type cell wall	7.72E-03
38	GO:0009295: nucleoid	1.28E-02
39	GO:0009707: chloroplast outer membrane	1.68E-02
40	GO:0016020: membrane	1.77E-02