GO Enrichment Analysis of Co-expressed Genes with
AT1G29700
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 2 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 3 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 4 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 5 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.86E-06 |
| 6 | GO:0015994: chlorophyll metabolic process | 1.84E-05 |
| 7 | GO:0008152: metabolic process | 5.37E-05 |
| 8 | GO:0019646: aerobic electron transport chain | 1.52E-04 |
| 9 | GO:0043953: protein transport by the Tat complex | 1.52E-04 |
| 10 | GO:0006824: cobalt ion transport | 1.52E-04 |
| 11 | GO:0000476: maturation of 4.5S rRNA | 1.52E-04 |
| 12 | GO:0000967: rRNA 5'-end processing | 1.52E-04 |
| 13 | GO:0043266: regulation of potassium ion transport | 1.52E-04 |
| 14 | GO:0010480: microsporocyte differentiation | 1.52E-04 |
| 15 | GO:0031338: regulation of vesicle fusion | 1.52E-04 |
| 16 | GO:0000481: maturation of 5S rRNA | 1.52E-04 |
| 17 | GO:0065002: intracellular protein transmembrane transport | 1.52E-04 |
| 18 | GO:2000021: regulation of ion homeostasis | 1.52E-04 |
| 19 | GO:0034628: 'de novo' NAD biosynthetic process from aspartate | 1.52E-04 |
| 20 | GO:0010028: xanthophyll cycle | 1.52E-04 |
| 21 | GO:0034337: RNA folding | 1.52E-04 |
| 22 | GO:0009773: photosynthetic electron transport in photosystem I | 2.75E-04 |
| 23 | GO:0005983: starch catabolic process | 3.17E-04 |
| 24 | GO:0034755: iron ion transmembrane transport | 3.47E-04 |
| 25 | GO:0016560: protein import into peroxisome matrix, docking | 3.47E-04 |
| 26 | GO:1900871: chloroplast mRNA modification | 3.47E-04 |
| 27 | GO:0016122: xanthophyll metabolic process | 3.47E-04 |
| 28 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.47E-04 |
| 29 | GO:0010270: photosystem II oxygen evolving complex assembly | 3.47E-04 |
| 30 | GO:0034470: ncRNA processing | 3.47E-04 |
| 31 | GO:0006000: fructose metabolic process | 5.68E-04 |
| 32 | GO:0051176: positive regulation of sulfur metabolic process | 5.68E-04 |
| 33 | GO:0090630: activation of GTPase activity | 5.68E-04 |
| 34 | GO:0071398: cellular response to fatty acid | 5.68E-04 |
| 35 | GO:0006857: oligopeptide transport | 7.63E-04 |
| 36 | GO:0080170: hydrogen peroxide transmembrane transport | 8.13E-04 |
| 37 | GO:1901332: negative regulation of lateral root development | 8.13E-04 |
| 38 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 8.13E-04 |
| 39 | GO:0045727: positive regulation of translation | 1.08E-03 |
| 40 | GO:0015979: photosynthesis | 1.09E-03 |
| 41 | GO:0006461: protein complex assembly | 1.36E-03 |
| 42 | GO:0009435: NAD biosynthetic process | 1.36E-03 |
| 43 | GO:0006810: transport | 1.59E-03 |
| 44 | GO:0006828: manganese ion transport | 1.67E-03 |
| 45 | GO:0000741: karyogamy | 1.67E-03 |
| 46 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.67E-03 |
| 47 | GO:0006751: glutathione catabolic process | 1.67E-03 |
| 48 | GO:0042549: photosystem II stabilization | 1.67E-03 |
| 49 | GO:0010256: endomembrane system organization | 1.67E-03 |
| 50 | GO:0042372: phylloquinone biosynthetic process | 2.01E-03 |
| 51 | GO:0042128: nitrate assimilation | 2.14E-03 |
| 52 | GO:0015995: chlorophyll biosynthetic process | 2.26E-03 |
| 53 | GO:0048437: floral organ development | 2.36E-03 |
| 54 | GO:0010196: nonphotochemical quenching | 2.36E-03 |
| 55 | GO:1900057: positive regulation of leaf senescence | 2.36E-03 |
| 56 | GO:0009645: response to low light intensity stimulus | 2.36E-03 |
| 57 | GO:0051510: regulation of unidimensional cell growth | 2.36E-03 |
| 58 | GO:0032508: DNA duplex unwinding | 2.73E-03 |
| 59 | GO:0010492: maintenance of shoot apical meristem identity | 2.73E-03 |
| 60 | GO:0006002: fructose 6-phosphate metabolic process | 3.12E-03 |
| 61 | GO:0071482: cellular response to light stimulus | 3.12E-03 |
| 62 | GO:0009657: plastid organization | 3.12E-03 |
| 63 | GO:0032544: plastid translation | 3.12E-03 |
| 64 | GO:0048507: meristem development | 3.53E-03 |
| 65 | GO:0010206: photosystem II repair | 3.53E-03 |
| 66 | GO:0009060: aerobic respiration | 3.53E-03 |
| 67 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.96E-03 |
| 68 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.40E-03 |
| 69 | GO:0006816: calcium ion transport | 4.86E-03 |
| 70 | GO:0009807: lignan biosynthetic process | 4.86E-03 |
| 71 | GO:0009750: response to fructose | 4.86E-03 |
| 72 | GO:0048229: gametophyte development | 4.86E-03 |
| 73 | GO:0016485: protein processing | 4.86E-03 |
| 74 | GO:0018107: peptidyl-threonine phosphorylation | 5.83E-03 |
| 75 | GO:0009718: anthocyanin-containing compound biosynthetic process | 5.83E-03 |
| 76 | GO:0010075: regulation of meristem growth | 5.83E-03 |
| 77 | GO:0009725: response to hormone | 5.83E-03 |
| 78 | GO:0006094: gluconeogenesis | 5.83E-03 |
| 79 | GO:0009767: photosynthetic electron transport chain | 5.83E-03 |
| 80 | GO:0005986: sucrose biosynthetic process | 5.83E-03 |
| 81 | GO:0010143: cutin biosynthetic process | 6.33E-03 |
| 82 | GO:0010207: photosystem II assembly | 6.33E-03 |
| 83 | GO:0009934: regulation of meristem structural organization | 6.33E-03 |
| 84 | GO:0055114: oxidation-reduction process | 6.76E-03 |
| 85 | GO:0006833: water transport | 7.40E-03 |
| 86 | GO:0016575: histone deacetylation | 8.51E-03 |
| 87 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.51E-03 |
| 88 | GO:0035428: hexose transmembrane transport | 9.69E-03 |
| 89 | GO:0016226: iron-sulfur cluster assembly | 9.69E-03 |
| 90 | GO:0009693: ethylene biosynthetic process | 1.03E-02 |
| 91 | GO:0040007: growth | 1.03E-02 |
| 92 | GO:0048653: anther development | 1.22E-02 |
| 93 | GO:0034220: ion transmembrane transport | 1.22E-02 |
| 94 | GO:0006662: glycerol ether metabolic process | 1.29E-02 |
| 95 | GO:0010197: polar nucleus fusion | 1.29E-02 |
| 96 | GO:0046323: glucose import | 1.29E-02 |
| 97 | GO:0009741: response to brassinosteroid | 1.29E-02 |
| 98 | GO:0009791: post-embryonic development | 1.42E-02 |
| 99 | GO:0009735: response to cytokinin | 1.49E-02 |
| 100 | GO:0030163: protein catabolic process | 1.64E-02 |
| 101 | GO:0009567: double fertilization forming a zygote and endosperm | 1.71E-02 |
| 102 | GO:0071805: potassium ion transmembrane transport | 1.79E-02 |
| 103 | GO:0016126: sterol biosynthetic process | 1.94E-02 |
| 104 | GO:0010027: thylakoid membrane organization | 1.94E-02 |
| 105 | GO:0009658: chloroplast organization | 2.09E-02 |
| 106 | GO:0016311: dephosphorylation | 2.26E-02 |
| 107 | GO:0009817: defense response to fungus, incompatible interaction | 2.34E-02 |
| 108 | GO:0018298: protein-chromophore linkage | 2.34E-02 |
| 109 | GO:0010311: lateral root formation | 2.43E-02 |
| 110 | GO:0000160: phosphorelay signal transduction system | 2.43E-02 |
| 111 | GO:0048527: lateral root development | 2.60E-02 |
| 112 | GO:0006865: amino acid transport | 2.69E-02 |
| 113 | GO:0034599: cellular response to oxidative stress | 2.86E-02 |
| 114 | GO:0045454: cell redox homeostasis | 3.10E-02 |
| 115 | GO:0006631: fatty acid metabolic process | 3.14E-02 |
| 116 | GO:0009744: response to sucrose | 3.32E-02 |
| 117 | GO:0009737: response to abscisic acid | 3.45E-02 |
| 118 | GO:0009644: response to high light intensity | 3.52E-02 |
| 119 | GO:0032259: methylation | 3.65E-02 |
| 120 | GO:0006855: drug transmembrane transport | 3.71E-02 |
| 121 | GO:0042538: hyperosmotic salinity response | 3.91E-02 |
| 122 | GO:0006979: response to oxidative stress | 4.07E-02 |
| 123 | GO:0009753: response to jasmonic acid | 4.09E-02 |
| 124 | GO:0006364: rRNA processing | 4.11E-02 |
| 125 | GO:0009585: red, far-red light phototransduction | 4.11E-02 |
| 126 | GO:0006813: potassium ion transport | 4.11E-02 |
| 127 | GO:0009736: cytokinin-activated signaling pathway | 4.11E-02 |
| 128 | GO:0006096: glycolytic process | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 2 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 3 | GO:0008987: quinolinate synthetase A activity | 0.00E+00 |
| 4 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 5 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 6 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 7 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 8 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 9 | GO:0005528: FK506 binding | 5.61E-09 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.60E-06 |
| 11 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.84E-05 |
| 12 | GO:0015194: L-serine transmembrane transporter activity | 1.52E-04 |
| 13 | GO:0050308: sugar-phosphatase activity | 1.52E-04 |
| 14 | GO:0019203: carbohydrate phosphatase activity | 1.52E-04 |
| 15 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.52E-04 |
| 16 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.47E-04 |
| 17 | GO:0010283: pinoresinol reductase activity | 3.47E-04 |
| 18 | GO:0047746: chlorophyllase activity | 3.47E-04 |
| 19 | GO:0016868: intramolecular transferase activity, phosphotransferases | 3.47E-04 |
| 20 | GO:0003839: gamma-glutamylcyclotransferase activity | 3.47E-04 |
| 21 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 3.47E-04 |
| 22 | GO:0050734: hydroxycinnamoyltransferase activity | 5.68E-04 |
| 23 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 5.68E-04 |
| 24 | GO:0019201: nucleotide kinase activity | 8.13E-04 |
| 25 | GO:0048487: beta-tubulin binding | 8.13E-04 |
| 26 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 1.08E-03 |
| 27 | GO:0004506: squalene monooxygenase activity | 1.08E-03 |
| 28 | GO:0048038: quinone binding | 1.34E-03 |
| 29 | GO:0017137: Rab GTPase binding | 1.36E-03 |
| 30 | GO:0035673: oligopeptide transmembrane transporter activity | 1.67E-03 |
| 31 | GO:0042578: phosphoric ester hydrolase activity | 1.67E-03 |
| 32 | GO:2001070: starch binding | 1.67E-03 |
| 33 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.01E-03 |
| 34 | GO:0004017: adenylate kinase activity | 2.01E-03 |
| 35 | GO:0008236: serine-type peptidase activity | 2.37E-03 |
| 36 | GO:0004033: aldo-keto reductase (NADP) activity | 2.73E-03 |
| 37 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.12E-03 |
| 38 | GO:0016787: hydrolase activity | 3.35E-03 |
| 39 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 3.53E-03 |
| 40 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 3.53E-03 |
| 41 | GO:0005381: iron ion transmembrane transporter activity | 3.96E-03 |
| 42 | GO:0005384: manganese ion transmembrane transporter activity | 3.96E-03 |
| 43 | GO:0008047: enzyme activator activity | 4.40E-03 |
| 44 | GO:0015293: symporter activity | 4.55E-03 |
| 45 | GO:0015198: oligopeptide transporter activity | 5.34E-03 |
| 46 | GO:0004565: beta-galactosidase activity | 5.83E-03 |
| 47 | GO:0008081: phosphoric diester hydrolase activity | 5.83E-03 |
| 48 | GO:0015095: magnesium ion transmembrane transporter activity | 5.83E-03 |
| 49 | GO:0008266: poly(U) RNA binding | 6.33E-03 |
| 50 | GO:0031409: pigment binding | 7.40E-03 |
| 51 | GO:0004407: histone deacetylase activity | 7.95E-03 |
| 52 | GO:0031418: L-ascorbic acid binding | 7.95E-03 |
| 53 | GO:0003954: NADH dehydrogenase activity | 7.95E-03 |
| 54 | GO:0015079: potassium ion transmembrane transporter activity | 8.51E-03 |
| 55 | GO:0004176: ATP-dependent peptidase activity | 9.10E-03 |
| 56 | GO:0033612: receptor serine/threonine kinase binding | 9.10E-03 |
| 57 | GO:0004252: serine-type endopeptidase activity | 1.08E-02 |
| 58 | GO:0047134: protein-disulfide reductase activity | 1.16E-02 |
| 59 | GO:0005215: transporter activity | 1.31E-02 |
| 60 | GO:0005355: glucose transmembrane transporter activity | 1.36E-02 |
| 61 | GO:0050662: coenzyme binding | 1.36E-02 |
| 62 | GO:0004791: thioredoxin-disulfide reductase activity | 1.36E-02 |
| 63 | GO:0004872: receptor activity | 1.42E-02 |
| 64 | GO:0008194: UDP-glycosyltransferase activity | 1.51E-02 |
| 65 | GO:0003743: translation initiation factor activity | 1.57E-02 |
| 66 | GO:0000156: phosphorelay response regulator activity | 1.64E-02 |
| 67 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.64E-02 |
| 68 | GO:0016491: oxidoreductase activity | 1.70E-02 |
| 69 | GO:0015250: water channel activity | 1.94E-02 |
| 70 | GO:0008168: methyltransferase activity | 2.01E-02 |
| 71 | GO:0016168: chlorophyll binding | 2.02E-02 |
| 72 | GO:0015238: drug transmembrane transporter activity | 2.43E-02 |
| 73 | GO:0005096: GTPase activator activity | 2.43E-02 |
| 74 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.05E-02 |
| 75 | GO:0042803: protein homodimerization activity | 3.24E-02 |
| 76 | GO:0043621: protein self-association | 3.52E-02 |
| 77 | GO:0005509: calcium ion binding | 3.65E-02 |
| 78 | GO:0015171: amino acid transmembrane transporter activity | 4.42E-02 |
| 79 | GO:0031625: ubiquitin protein ligase binding | 4.42E-02 |
| 80 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.95E-02 |
| 81 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043233: organelle lumen | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.80E-25 |
| 4 | GO:0009534: chloroplast thylakoid | 1.55E-14 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 7.70E-13 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.40E-11 |
| 7 | GO:0009941: chloroplast envelope | 3.06E-10 |
| 8 | GO:0009570: chloroplast stroma | 4.28E-10 |
| 9 | GO:0031977: thylakoid lumen | 3.98E-08 |
| 10 | GO:0010287: plastoglobule | 7.03E-07 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.02E-06 |
| 12 | GO:0009579: thylakoid | 4.52E-06 |
| 13 | GO:0030095: chloroplast photosystem II | 1.42E-05 |
| 14 | GO:0009533: chloroplast stromal thylakoid | 8.40E-05 |
| 15 | GO:0009782: photosystem I antenna complex | 1.52E-04 |
| 16 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.52E-04 |
| 17 | GO:0031361: integral component of thylakoid membrane | 1.52E-04 |
| 18 | GO:0031304: intrinsic component of mitochondrial inner membrane | 3.47E-04 |
| 19 | GO:0005782: peroxisomal matrix | 5.68E-04 |
| 20 | GO:0033281: TAT protein transport complex | 5.68E-04 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 6.20E-04 |
| 22 | GO:0042651: thylakoid membrane | 6.20E-04 |
| 23 | GO:0019898: extrinsic component of membrane | 1.25E-03 |
| 24 | GO:0008180: COP9 signalosome | 3.53E-03 |
| 25 | GO:0031969: chloroplast membrane | 4.91E-03 |
| 26 | GO:0032040: small-subunit processome | 5.34E-03 |
| 27 | GO:0030076: light-harvesting complex | 6.86E-03 |
| 28 | GO:0009705: plant-type vacuole membrane | 1.34E-02 |
| 29 | GO:0009523: photosystem II | 1.42E-02 |
| 30 | GO:0019005: SCF ubiquitin ligase complex | 2.34E-02 |
| 31 | GO:0016021: integral component of membrane | 2.57E-02 |
| 32 | GO:0000502: proteasome complex | 4.11E-02 |