co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0006412: translation	4.28E-116
3	GO:0042254: ribosome biogenesis	1.68E-42
4	GO:0000027: ribosomal large subunit assembly	1.57E-13
5	GO:0009735: response to cytokinin	4.31E-08
6	GO:0009955: adaxial/abaxial pattern specification	3.73E-07
7	GO:0002181: cytoplasmic translation	3.08E-06
8	GO:0042274: ribosomal small subunit biogenesis	1.36E-05
9	GO:0009793: embryo development ending in seed dormancy	3.22E-05
10	GO:0006364: rRNA processing	4.37E-05
11	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.27E-04
12	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.27E-04
13	GO:0006407: rRNA export from nucleus	1.27E-04
14	GO:0006913: nucleocytoplasmic transport	2.14E-04
15	GO:0006626: protein targeting to mitochondrion	2.83E-04
16	GO:0009967: positive regulation of signal transduction	2.94E-04
17	GO:0048569: post-embryonic animal organ development	2.94E-04
18	GO:0009965: leaf morphogenesis	4.10E-04
19	GO:1902626: assembly of large subunit precursor of preribosome	4.86E-04
20	GO:0010476: gibberellin mediated signaling pathway	4.86E-04
21	GO:0042256: mature ribosome assembly	4.86E-04
22	GO:0040007: growth	6.40E-04
23	GO:0006241: CTP biosynthetic process	6.95E-04
24	GO:0006165: nucleoside diphosphate phosphorylation	6.95E-04
25	GO:0006228: UTP biosynthetic process	6.95E-04
26	GO:0070301: cellular response to hydrogen peroxide	6.95E-04
27	GO:0006183: GTP biosynthetic process	9.21E-04
28	GO:0071493: cellular response to UV-B	1.16E-03
29	GO:0000470: maturation of LSU-rRNA	1.43E-03
30	GO:0000911: cytokinesis by cell plate formation	1.71E-03
31	GO:0000028: ribosomal small subunit assembly	2.32E-03
32	GO:0001558: regulation of cell growth	2.65E-03
33	GO:0008283: cell proliferation	3.19E-03
34	GO:0009409: response to cold	3.25E-03
35	GO:0000387: spliceosomal snRNP assembly	3.36E-03
36	GO:0010162: seed dormancy process	3.73E-03
37	GO:0010015: root morphogenesis	4.12E-03
38	GO:0046686: response to cadmium ion	4.16E-03
39	GO:0006820: anion transport	4.52E-03
40	GO:0006414: translational elongation	4.87E-03
41	GO:0010102: lateral root morphogenesis	4.93E-03
42	GO:0010229: inflorescence development	4.93E-03
43	GO:0048467: gynoecium development	5.36E-03
44	GO:0030150: protein import into mitochondrial matrix	6.71E-03
45	GO:0009944: polarity specification of adaxial/abaxial axis	6.71E-03
46	GO:0051302: regulation of cell division	7.19E-03
47	GO:0007005: mitochondrion organization	8.18E-03
48	GO:0071215: cellular response to abscisic acid stimulus	8.69E-03
49	GO:0009294: DNA mediated transformation	8.69E-03
50	GO:0006413: translational initiation	9.81E-03
51	GO:0000413: protein peptidyl-prolyl isomerization	1.03E-02
52	GO:0006606: protein import into nucleus	1.03E-02
53	GO:0009791: post-embryonic development	1.20E-02
54	GO:0009749: response to glucose	1.20E-02
55	GO:0032502: developmental process	1.32E-02
56	GO:0010090: trichome morphogenesis	1.38E-02
57	GO:0006811: ion transport	2.11E-02
58	GO:0010043: response to zinc ion	2.19E-02
59	GO:0009644: response to high light intensity	2.96E-02
60	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.20E-02
61	GO:0006417: regulation of translation	3.72E-02
62	GO:0015031: protein transport	4.01E-02
63	GO:0009620: response to fungus	4.16E-02
64	GO:0009734: auxin-activated signaling pathway	4.21E-02
65	GO:0016569: covalent chromatin modification	4.26E-02
66	GO:0009651: response to salt stress	4.66E-02
67	GO:0000398: mRNA splicing, via spliceosome	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0016018: cyclosporin A binding	0.00E+00
2	GO:0003735: structural constituent of ribosome	8.35E-141
3	GO:0003729: mRNA binding	1.90E-35
4	GO:0019843: rRNA binding	3.93E-07
5	GO:0008097: 5S rRNA binding	7.24E-06
6	GO:0005078: MAP-kinase scaffold activity	2.94E-04
7	GO:0032947: protein complex scaffold	4.86E-04
8	GO:0070181: small ribosomal subunit rRNA binding	4.86E-04
9	GO:0004550: nucleoside diphosphate kinase activity	6.95E-04
10	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.97E-03
11	GO:0008235: metalloexopeptidase activity	2.01E-03
12	GO:0015288: porin activity	2.32E-03
13	GO:0008308: voltage-gated anion channel activity	2.65E-03
14	GO:0003723: RNA binding	3.38E-03
15	GO:0015266: protein channel activity	4.93E-03
16	GO:0004407: histone deacetylase activity	6.71E-03
17	GO:0008536: Ran GTPase binding	1.09E-02
18	GO:0046872: metal ion binding	2.57E-02
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.12E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0022626: cytosolic ribosome	1.32E-101
3	GO:0022625: cytosolic large ribosomal subunit	8.66E-86
4	GO:0005840: ribosome	5.28E-80
5	GO:0022627: cytosolic small ribosomal subunit	2.83E-52
6	GO:0005730: nucleolus	7.62E-43
7	GO:0005829: cytosol	8.17E-35
8	GO:0005737: cytoplasm	4.59E-33
9	GO:0009506: plasmodesma	2.72E-30
10	GO:0015934: large ribosomal subunit	2.18E-22
11	GO:0016020: membrane	1.33E-14
12	GO:0005774: vacuolar membrane	2.36E-14
13	GO:0015935: small ribosomal subunit	4.77E-11
14	GO:0005773: vacuole	1.10E-10
15	GO:0005886: plasma membrane	3.55E-10
16	GO:0005618: cell wall	1.44E-09
17	GO:0009507: chloroplast	3.00E-06
18	GO:0005742: mitochondrial outer membrane translocase complex	1.04E-04
19	GO:0030686: 90S preribosome	1.27E-04
20	GO:0034719: SMN-Sm protein complex	4.86E-04
21	GO:0005682: U5 snRNP	9.21E-04
22	GO:0005687: U4 snRNP	1.16E-03
23	GO:0097526: spliceosomal tri-snRNP complex	1.16E-03
24	GO:0005689: U12-type spliceosomal complex	1.71E-03
25	GO:0071004: U2-type prespliceosome	2.32E-03
26	GO:0046930: pore complex	2.65E-03
27	GO:0005685: U1 snRNP	3.00E-03
28	GO:0005763: mitochondrial small ribosomal subunit	3.00E-03
29	GO:0071011: precatalytic spliceosome	3.36E-03
30	GO:0005686: U2 snRNP	3.73E-03
31	GO:0071013: catalytic step 2 spliceosome	4.12E-03
32	GO:0019013: viral nucleocapsid	4.93E-03
33	GO:0005622: intracellular	6.35E-03
34	GO:0005758: mitochondrial intermembrane space	6.71E-03
35	GO:0005741: mitochondrial outer membrane	7.68E-03
36	GO:0030529: intracellular ribonucleoprotein complex	1.63E-02
37	GO:0005743: mitochondrial inner membrane	2.79E-02
38	GO:0005635: nuclear envelope	3.63E-02
39	GO:0005681: spliceosomal complex	3.89E-02
40	GO:0005834: heterotrimeric G-protein complex	4.07E-02
41	GO:0005732: small nucleolar ribonucleoprotein complex	4.72E-02