co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0048227: plasma membrane to endosome transport	0.00E+00
4	GO:0030149: sphingolipid catabolic process	0.00E+00
5	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
6	GO:0006457: protein folding	7.84E-09
7	GO:0006102: isocitrate metabolic process	1.38E-08
8	GO:0006101: citrate metabolic process	1.45E-06
9	GO:0006099: tricarboxylic acid cycle	1.59E-06
10	GO:0009408: response to heat	7.00E-06
11	GO:0001676: long-chain fatty acid metabolic process	1.24E-05
12	GO:0034976: response to endoplasmic reticulum stress	2.79E-05
13	GO:0006097: glyoxylate cycle	3.73E-05
14	GO:1990641: response to iron ion starvation	1.73E-04
15	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.73E-04
16	GO:1990022: RNA polymerase III complex localization to nucleus	1.73E-04
17	GO:0046244: salicylic acid catabolic process	1.73E-04
18	GO:1901183: positive regulation of camalexin biosynthetic process	1.73E-04
19	GO:0044376: RNA polymerase II complex import to nucleus	1.73E-04
20	GO:0060862: negative regulation of floral organ abscission	1.73E-04
21	GO:0006390: transcription from mitochondrial promoter	1.73E-04
22	GO:0048448: stamen morphogenesis	1.73E-04
23	GO:0035266: meristem growth	1.73E-04
24	GO:0010450: inflorescence meristem growth	1.73E-04
25	GO:0007292: female gamete generation	1.73E-04
26	GO:0046686: response to cadmium ion	1.88E-04
27	GO:0045454: cell redox homeostasis	2.91E-04
28	GO:0006499: N-terminal protein myristoylation	3.66E-04
29	GO:0048833: specification of floral organ number	3.92E-04
30	GO:0051788: response to misfolded protein	3.92E-04
31	GO:0031349: positive regulation of defense response	3.92E-04
32	GO:0019752: carboxylic acid metabolic process	3.92E-04
33	GO:1902000: homogentisate catabolic process	3.92E-04
34	GO:0008535: respiratory chain complex IV assembly	3.92E-04
35	GO:0097054: L-glutamate biosynthetic process	3.92E-04
36	GO:0031204: posttranslational protein targeting to membrane, translocation	3.92E-04
37	GO:0006952: defense response	5.20E-04
38	GO:0090351: seedling development	5.46E-04
39	GO:0060968: regulation of gene silencing	6.40E-04
40	GO:0055074: calcium ion homeostasis	6.40E-04
41	GO:1900140: regulation of seedling development	6.40E-04
42	GO:0009072: aromatic amino acid family metabolic process	6.40E-04
43	GO:0006855: drug transmembrane transport	7.35E-04
44	GO:0030433: ubiquitin-dependent ERAD pathway	8.83E-04
45	GO:0072334: UDP-galactose transmembrane transport	9.13E-04
46	GO:0009399: nitrogen fixation	9.13E-04
47	GO:0006537: glutamate biosynthetic process	9.13E-04
48	GO:0010116: positive regulation of abscisic acid biosynthetic process	9.13E-04
49	GO:0002239: response to oomycetes	9.13E-04
50	GO:0042742: defense response to bacterium	1.07E-03
51	GO:0006979: response to oxidative stress	1.09E-03
52	GO:0033356: UDP-L-arabinose metabolic process	1.21E-03
53	GO:0006542: glutamine biosynthetic process	1.21E-03
54	GO:0019676: ammonia assimilation cycle	1.21E-03
55	GO:0060548: negative regulation of cell death	1.21E-03
56	GO:0006468: protein phosphorylation	1.31E-03
57	GO:0009697: salicylic acid biosynthetic process	1.54E-03
58	GO:0006090: pyruvate metabolic process	1.54E-03
59	GO:0030041: actin filament polymerization	1.54E-03
60	GO:0046283: anthocyanin-containing compound metabolic process	1.54E-03
61	GO:0010193: response to ozone	1.60E-03
62	GO:0000302: response to reactive oxygen species	1.60E-03
63	GO:0007264: small GTPase mediated signal transduction	1.70E-03
64	GO:0035435: phosphate ion transmembrane transport	1.89E-03
65	GO:0002238: response to molecule of fungal origin	1.89E-03
66	GO:0006014: D-ribose metabolic process	1.89E-03
67	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.89E-03
68	GO:0010942: positive regulation of cell death	1.89E-03
69	GO:0048827: phyllome development	1.89E-03
70	GO:0048232: male gamete generation	1.89E-03
71	GO:0043248: proteasome assembly	1.89E-03
72	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.27E-03
73	GO:0009615: response to virus	2.30E-03
74	GO:0042773: ATP synthesis coupled electron transport	2.67E-03
75	GO:1900057: positive regulation of leaf senescence	2.67E-03
76	GO:1902074: response to salt	2.67E-03
77	GO:0043090: amino acid import	2.67E-03
78	GO:0006950: response to stress	2.70E-03
79	GO:0010150: leaf senescence	2.71E-03
80	GO:0008219: cell death	2.99E-03
81	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.09E-03
82	GO:0010078: maintenance of root meristem identity	3.09E-03
83	GO:0007166: cell surface receptor signaling pathway	3.21E-03
84	GO:0009407: toxin catabolic process	3.29E-03
85	GO:0009880: embryonic pattern specification	3.54E-03
86	GO:0010120: camalexin biosynthetic process	3.54E-03
87	GO:0010204: defense response signaling pathway, resistance gene-independent	3.54E-03
88	GO:0045087: innate immune response	3.78E-03
89	GO:0046685: response to arsenic-containing substance	4.00E-03
90	GO:0043067: regulation of programmed cell death	4.49E-03
91	GO:0090332: stomatal closure	4.49E-03
92	GO:0006631: fatty acid metabolic process	4.49E-03
93	GO:0000103: sulfate assimilation	4.99E-03
94	GO:0048829: root cap development	4.99E-03
95	GO:0009965: leaf morphogenesis	5.46E-03
96	GO:0010015: root morphogenesis	5.52E-03
97	GO:0015031: protein transport	6.18E-03
98	GO:0010200: response to chitin	6.48E-03
99	GO:0006108: malate metabolic process	6.61E-03
100	GO:0009933: meristem structural organization	7.20E-03
101	GO:0006096: glycolytic process	7.74E-03
102	GO:0070588: calcium ion transmembrane transport	7.79E-03
103	GO:0000027: ribosomal large subunit assembly	9.03E-03
104	GO:0010187: negative regulation of seed germination	9.03E-03
105	GO:0009553: embryo sac development	9.05E-03
106	GO:0009624: response to nematode	9.33E-03
107	GO:0098542: defense response to other organism	1.03E-02
108	GO:0031348: negative regulation of defense response	1.10E-02
109	GO:0019748: secondary metabolic process	1.10E-02
110	GO:0055114: oxidation-reduction process	1.19E-02
111	GO:0009790: embryo development	1.37E-02
112	GO:0042631: cellular response to water deprivation	1.39E-02
113	GO:0008033: tRNA processing	1.39E-02
114	GO:0010118: stomatal movement	1.39E-02
115	GO:0071472: cellular response to salt stress	1.47E-02
116	GO:0006520: cellular amino acid metabolic process	1.47E-02
117	GO:0006662: glycerol ether metabolic process	1.47E-02
118	GO:0010197: polar nucleus fusion	1.47E-02
119	GO:0048868: pollen tube development	1.47E-02
120	GO:0019252: starch biosynthetic process	1.62E-02
121	GO:0002229: defense response to oomycetes	1.70E-02
122	GO:0006891: intra-Golgi vesicle-mediated transport	1.70E-02
123	GO:0032502: developmental process	1.78E-02
124	GO:0030163: protein catabolic process	1.87E-02
125	GO:0009735: response to cytokinin	1.88E-02
126	GO:0010252: auxin homeostasis	1.95E-02
127	GO:0009567: double fertilization forming a zygote and endosperm	1.95E-02
128	GO:0010286: heat acclimation	2.04E-02
129	GO:0009816: defense response to bacterium, incompatible interaction	2.30E-02
130	GO:0009607: response to biotic stimulus	2.30E-02
131	GO:0042128: nitrate assimilation	2.39E-02
132	GO:0048481: plant ovule development	2.67E-02
133	GO:0030244: cellulose biosynthetic process	2.67E-02
134	GO:0006970: response to osmotic stress	2.70E-02
135	GO:0010311: lateral root formation	2.77E-02
136	GO:0009832: plant-type cell wall biogenesis	2.77E-02
137	GO:0048527: lateral root development	2.96E-02
138	GO:0010043: response to zinc ion	2.96E-02
139	GO:0006865: amino acid transport	3.06E-02
140	GO:0080167: response to karrikin	3.11E-02
141	GO:0009853: photorespiration	3.16E-02
142	GO:0034599: cellular response to oxidative stress	3.27E-02
143	GO:0006886: intracellular protein transport	3.83E-02
144	GO:0009636: response to toxic substance	4.12E-02
145	GO:0009751: response to salicylic acid	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0015930: glutamate synthase activity	0.00E+00
4	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
5	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
6	GO:0005524: ATP binding	3.30E-10
7	GO:0003994: aconitate hydratase activity	1.45E-06
8	GO:0005093: Rab GDP-dissociation inhibitor activity	5.37E-06
9	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.24E-05
10	GO:0051082: unfolded protein binding	1.45E-05
11	GO:0002020: protease binding	3.73E-05
12	GO:0051539: 4 iron, 4 sulfur cluster binding	4.38E-05
13	GO:0003756: protein disulfide isomerase activity	6.84E-05
14	GO:0102391: decanoate--CoA ligase activity	7.74E-05
15	GO:0004467: long-chain fatty acid-CoA ligase activity	1.03E-04
16	GO:0016301: kinase activity	1.06E-04
17	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.32E-04
18	GO:0051669: fructan beta-fructosidase activity	1.73E-04
19	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	1.73E-04
20	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.73E-04
21	GO:0031219: levanase activity	1.73E-04
22	GO:0016041: glutamate synthase (ferredoxin) activity	1.73E-04
23	GO:0030955: potassium ion binding	2.41E-04
24	GO:0004743: pyruvate kinase activity	2.41E-04
25	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.92E-04
26	GO:0015036: disulfide oxidoreductase activity	3.92E-04
27	GO:0008517: folic acid transporter activity	3.92E-04
28	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.92E-04
29	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.21E-03
30	GO:0004470: malic enzyme activity	1.21E-03
31	GO:0010279: indole-3-acetic acid amido synthetase activity	1.21E-03
32	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.21E-03
33	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.21E-03
34	GO:0005215: transporter activity	1.31E-03
35	GO:0010181: FMN binding	1.40E-03
36	GO:0005459: UDP-galactose transmembrane transporter activity	1.54E-03
37	GO:0051538: 3 iron, 4 sulfur cluster binding	1.54E-03
38	GO:0004356: glutamate-ammonia ligase activity	1.54E-03
39	GO:0016491: oxidoreductase activity	1.85E-03
40	GO:0036402: proteasome-activating ATPase activity	1.89E-03
41	GO:0004747: ribokinase activity	2.27E-03
42	GO:0004656: procollagen-proline 4-dioxygenase activity	2.27E-03
43	GO:0008320: protein transmembrane transporter activity	2.67E-03
44	GO:0016831: carboxy-lyase activity	2.67E-03
45	GO:0008865: fructokinase activity	3.09E-03
46	GO:0015238: drug transmembrane transporter activity	3.14E-03
47	GO:0005096: GTPase activator activity	3.14E-03
48	GO:0004674: protein serine/threonine kinase activity	3.19E-03
49	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.78E-03
50	GO:0045309: protein phosphorylated amino acid binding	4.49E-03
51	GO:0004364: glutathione transferase activity	4.67E-03
52	GO:0004713: protein tyrosine kinase activity	4.99E-03
53	GO:0019904: protein domain specific binding	5.52E-03
54	GO:0008559: xenobiotic-transporting ATPase activity	5.52E-03
55	GO:0005388: calcium-transporting ATPase activity	6.61E-03
56	GO:0005315: inorganic phosphate transmembrane transporter activity	6.61E-03
57	GO:0031072: heat shock protein binding	6.61E-03
58	GO:0017025: TBP-class protein binding	7.79E-03
59	GO:0003712: transcription cofactor activity	7.79E-03
60	GO:0005507: copper ion binding	8.70E-03
61	GO:0051536: iron-sulfur cluster binding	9.03E-03
62	GO:0031418: L-ascorbic acid binding	9.03E-03
63	GO:0003954: NADH dehydrogenase activity	9.03E-03
64	GO:0015035: protein disulfide oxidoreductase activity	9.61E-03
65	GO:0043424: protein histidine kinase binding	9.69E-03
66	GO:0004298: threonine-type endopeptidase activity	1.03E-02
67	GO:0033612: receptor serine/threonine kinase binding	1.03E-02
68	GO:0005509: calcium ion binding	1.31E-02
69	GO:0047134: protein-disulfide reductase activity	1.32E-02
70	GO:0008565: protein transporter activity	1.40E-02
71	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.51E-02
72	GO:0004791: thioredoxin-disulfide reductase activity	1.54E-02
73	GO:0015297: antiporter activity	1.54E-02
74	GO:0016853: isomerase activity	1.54E-02
75	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.70E-02
76	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.87E-02
77	GO:0008483: transaminase activity	2.04E-02
78	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.06E-02
79	GO:0016597: amino acid binding	2.12E-02
80	GO:0051213: dioxygenase activity	2.21E-02
81	GO:0000287: magnesium ion binding	2.46E-02
82	GO:0030247: polysaccharide binding	2.48E-02
83	GO:0004672: protein kinase activity	2.62E-02
84	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.67E-02
85	GO:0016740: transferase activity	2.70E-02
86	GO:0043531: ADP binding	2.75E-02
87	GO:0050897: cobalt ion binding	2.96E-02
88	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.27E-02
89	GO:0051537: 2 iron, 2 sulfur cluster binding	4.01E-02
90	GO:0015293: symporter activity	4.12E-02
91	GO:0051287: NAD binding	4.34E-02
92	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.68E-02
93	GO:0009055: electron carrier activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005784: Sec61 translocon complex	0.00E+00
4	GO:0005886: plasma membrane	2.34E-08
5	GO:0005829: cytosol	6.35E-08
6	GO:0005788: endoplasmic reticulum lumen	4.19E-07
7	GO:0005774: vacuolar membrane	4.69E-06
8	GO:0005783: endoplasmic reticulum	5.31E-06
9	GO:0005794: Golgi apparatus	1.41E-04
10	GO:0005911: cell-cell junction	1.73E-04
11	GO:0034245: mitochondrial DNA-directed RNA polymerase complex	1.73E-04
12	GO:0031314: extrinsic component of mitochondrial inner membrane	3.92E-04
13	GO:0030134: ER to Golgi transport vesicle	3.92E-04
14	GO:0046861: glyoxysomal membrane	6.40E-04
15	GO:0016363: nuclear matrix	2.27E-03
16	GO:0005801: cis-Golgi network	2.27E-03
17	GO:0031597: cytosolic proteasome complex	2.27E-03
18	GO:0030173: integral component of Golgi membrane	2.27E-03
19	GO:0009506: plasmodesma	2.32E-03
20	GO:0031595: nuclear proteasome complex	2.67E-03
21	GO:0000326: protein storage vacuole	3.54E-03
22	GO:0009514: glyoxysome	3.54E-03
23	GO:0019773: proteasome core complex, alpha-subunit complex	3.54E-03
24	GO:0008540: proteasome regulatory particle, base subcomplex	4.49E-03
25	GO:0005618: cell wall	5.61E-03
26	GO:0016021: integral component of membrane	5.98E-03
27	GO:0005777: peroxisome	6.28E-03
28	GO:0000502: proteasome complex	6.55E-03
29	GO:0030176: integral component of endoplasmic reticulum membrane	7.79E-03
30	GO:0005795: Golgi stack	7.79E-03
31	GO:0016020: membrane	7.91E-03
32	GO:0045271: respiratory chain complex I	9.69E-03
33	GO:0005839: proteasome core complex	1.03E-02
34	GO:0016592: mediator complex	1.78E-02
35	GO:0022626: cytosolic ribosome	1.99E-02
36	GO:0005789: endoplasmic reticulum membrane	2.78E-02
37	GO:0000325: plant-type vacuole	2.96E-02
38	GO:0048046: apoplast	3.71E-02
39	GO:0005743: mitochondrial inner membrane	4.26E-02
40	GO:0031966: mitochondrial membrane	4.45E-02
41	GO:0005635: nuclear envelope	4.91E-02