GO Enrichment Analysis of Co-expressed Genes with
AT1G27480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 4 | GO:0017038: protein import | 0.00E+00 |
| 5 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 8.68E-07 |
| 6 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.35E-05 |
| 7 | GO:0006821: chloride transport | 6.70E-05 |
| 8 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.31E-04 |
| 9 | GO:0000476: maturation of 4.5S rRNA | 1.31E-04 |
| 10 | GO:0000967: rRNA 5'-end processing | 1.31E-04 |
| 11 | GO:0000481: maturation of 5S rRNA | 1.31E-04 |
| 12 | GO:0042547: cell wall modification involved in multidimensional cell growth | 1.31E-04 |
| 13 | GO:1902458: positive regulation of stomatal opening | 1.31E-04 |
| 14 | GO:0010028: xanthophyll cycle | 1.31E-04 |
| 15 | GO:0034337: RNA folding | 1.31E-04 |
| 16 | GO:0010206: photosystem II repair | 1.34E-04 |
| 17 | GO:0006094: gluconeogenesis | 2.95E-04 |
| 18 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.03E-04 |
| 19 | GO:0034470: ncRNA processing | 3.03E-04 |
| 20 | GO:0034755: iron ion transmembrane transport | 3.03E-04 |
| 21 | GO:0016122: xanthophyll metabolic process | 3.03E-04 |
| 22 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.03E-04 |
| 23 | GO:0090351: seedling development | 3.75E-04 |
| 24 | GO:0006011: UDP-glucose metabolic process | 4.99E-04 |
| 25 | GO:0006000: fructose metabolic process | 4.99E-04 |
| 26 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 4.99E-04 |
| 27 | GO:0006954: inflammatory response | 4.99E-04 |
| 28 | GO:0006518: peptide metabolic process | 4.99E-04 |
| 29 | GO:0005977: glycogen metabolic process | 4.99E-04 |
| 30 | GO:0006730: one-carbon metabolic process | 6.13E-04 |
| 31 | GO:0016556: mRNA modification | 7.14E-04 |
| 32 | GO:0033014: tetrapyrrole biosynthetic process | 7.14E-04 |
| 33 | GO:1902476: chloride transmembrane transport | 7.14E-04 |
| 34 | GO:0015994: chlorophyll metabolic process | 9.47E-04 |
| 35 | GO:0071483: cellular response to blue light | 9.47E-04 |
| 36 | GO:0010109: regulation of photosynthesis | 9.47E-04 |
| 37 | GO:0006564: L-serine biosynthetic process | 1.20E-03 |
| 38 | GO:0000470: maturation of LSU-rRNA | 1.47E-03 |
| 39 | GO:0016554: cytidine to uridine editing | 1.47E-03 |
| 40 | GO:0032973: amino acid export | 1.47E-03 |
| 41 | GO:0000741: karyogamy | 1.47E-03 |
| 42 | GO:0042793: transcription from plastid promoter | 1.47E-03 |
| 43 | GO:0010942: positive regulation of cell death | 1.47E-03 |
| 44 | GO:0009451: RNA modification | 1.72E-03 |
| 45 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.76E-03 |
| 46 | GO:0043090: amino acid import | 2.06E-03 |
| 47 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.06E-03 |
| 48 | GO:0009737: response to abscisic acid | 2.22E-03 |
| 49 | GO:0006605: protein targeting | 2.39E-03 |
| 50 | GO:0032508: DNA duplex unwinding | 2.39E-03 |
| 51 | GO:2000070: regulation of response to water deprivation | 2.39E-03 |
| 52 | GO:0010492: maintenance of shoot apical meristem identity | 2.39E-03 |
| 53 | GO:0052543: callose deposition in cell wall | 2.39E-03 |
| 54 | GO:0006002: fructose 6-phosphate metabolic process | 2.73E-03 |
| 55 | GO:0071482: cellular response to light stimulus | 2.73E-03 |
| 56 | GO:0032544: plastid translation | 2.73E-03 |
| 57 | GO:0006098: pentose-phosphate shunt | 3.08E-03 |
| 58 | GO:0048507: meristem development | 3.08E-03 |
| 59 | GO:0009821: alkaloid biosynthetic process | 3.08E-03 |
| 60 | GO:0080144: amino acid homeostasis | 3.08E-03 |
| 61 | GO:0006783: heme biosynthetic process | 3.08E-03 |
| 62 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.46E-03 |
| 63 | GO:1900865: chloroplast RNA modification | 3.46E-03 |
| 64 | GO:0055062: phosphate ion homeostasis | 3.84E-03 |
| 65 | GO:0019684: photosynthesis, light reaction | 4.24E-03 |
| 66 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.24E-03 |
| 67 | GO:0006879: cellular iron ion homeostasis | 4.24E-03 |
| 68 | GO:0006352: DNA-templated transcription, initiation | 4.24E-03 |
| 69 | GO:0009750: response to fructose | 4.24E-03 |
| 70 | GO:0005983: starch catabolic process | 4.65E-03 |
| 71 | GO:0015706: nitrate transport | 4.65E-03 |
| 72 | GO:0009767: photosynthetic electron transport chain | 5.08E-03 |
| 73 | GO:0005986: sucrose biosynthetic process | 5.08E-03 |
| 74 | GO:0010207: photosystem II assembly | 5.52E-03 |
| 75 | GO:0010167: response to nitrate | 5.97E-03 |
| 76 | GO:0016575: histone deacetylation | 7.40E-03 |
| 77 | GO:0006418: tRNA aminoacylation for protein translation | 7.40E-03 |
| 78 | GO:0009814: defense response, incompatible interaction | 8.42E-03 |
| 79 | GO:0009306: protein secretion | 9.49E-03 |
| 80 | GO:0010197: polar nucleus fusion | 1.12E-02 |
| 81 | GO:0009646: response to absence of light | 1.18E-02 |
| 82 | GO:0006814: sodium ion transport | 1.18E-02 |
| 83 | GO:0006412: translation | 1.28E-02 |
| 84 | GO:0009409: response to cold | 1.31E-02 |
| 85 | GO:0030163: protein catabolic process | 1.42E-02 |
| 86 | GO:0010090: trichome morphogenesis | 1.42E-02 |
| 87 | GO:0006508: proteolysis | 1.46E-02 |
| 88 | GO:0071805: potassium ion transmembrane transport | 1.55E-02 |
| 89 | GO:0001666: response to hypoxia | 1.68E-02 |
| 90 | GO:0009658: chloroplast organization | 1.71E-02 |
| 91 | GO:0042128: nitrate assimilation | 1.82E-02 |
| 92 | GO:0016311: dephosphorylation | 1.96E-02 |
| 93 | GO:0048481: plant ovule development | 2.03E-02 |
| 94 | GO:0009853: photorespiration | 2.41E-02 |
| 95 | GO:0045087: innate immune response | 2.41E-02 |
| 96 | GO:0015979: photosynthesis | 2.42E-02 |
| 97 | GO:0006839: mitochondrial transport | 2.64E-02 |
| 98 | GO:0006631: fatty acid metabolic process | 2.72E-02 |
| 99 | GO:0051707: response to other organism | 2.88E-02 |
| 100 | GO:0009793: embryo development ending in seed dormancy | 2.90E-02 |
| 101 | GO:0032259: methylation | 2.99E-02 |
| 102 | GO:0009408: response to heat | 3.12E-02 |
| 103 | GO:0006855: drug transmembrane transport | 3.22E-02 |
| 104 | GO:0006364: rRNA processing | 3.56E-02 |
| 105 | GO:0006813: potassium ion transport | 3.56E-02 |
| 106 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.65E-02 |
| 107 | GO:0006857: oligopeptide transport | 3.74E-02 |
| 108 | GO:0006096: glycolytic process | 4.01E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 3 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 4 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 5 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 4.48E-07 |
| 9 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 8.68E-07 |
| 10 | GO:0005247: voltage-gated chloride channel activity | 3.53E-05 |
| 11 | GO:0009671: nitrate:proton symporter activity | 1.31E-04 |
| 12 | GO:0004325: ferrochelatase activity | 1.31E-04 |
| 13 | GO:0004519: endonuclease activity | 2.44E-04 |
| 14 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 3.03E-04 |
| 15 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.03E-04 |
| 16 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.03E-04 |
| 17 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 3.03E-04 |
| 18 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.03E-04 |
| 19 | GO:0008266: poly(U) RNA binding | 3.34E-04 |
| 20 | GO:0003723: RNA binding | 4.45E-04 |
| 21 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 4.99E-04 |
| 22 | GO:0002161: aminoacyl-tRNA editing activity | 4.99E-04 |
| 23 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 4.99E-04 |
| 24 | GO:0016787: hydrolase activity | 6.27E-04 |
| 25 | GO:0048487: beta-tubulin binding | 7.14E-04 |
| 26 | GO:0008508: bile acid:sodium symporter activity | 7.14E-04 |
| 27 | GO:0016987: sigma factor activity | 9.47E-04 |
| 28 | GO:0005253: anion channel activity | 9.47E-04 |
| 29 | GO:0001053: plastid sigma factor activity | 9.47E-04 |
| 30 | GO:0004252: serine-type endopeptidase activity | 1.27E-03 |
| 31 | GO:0004332: fructose-bisphosphate aldolase activity | 1.47E-03 |
| 32 | GO:0042578: phosphoric ester hydrolase activity | 1.47E-03 |
| 33 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.76E-03 |
| 34 | GO:0008236: serine-type peptidase activity | 1.95E-03 |
| 35 | GO:0008312: 7S RNA binding | 2.39E-03 |
| 36 | GO:0004033: aldo-keto reductase (NADP) activity | 2.39E-03 |
| 37 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.73E-03 |
| 38 | GO:0005381: iron ion transmembrane transporter activity | 3.46E-03 |
| 39 | GO:0016844: strictosidine synthase activity | 3.46E-03 |
| 40 | GO:0015112: nitrate transmembrane transporter activity | 3.46E-03 |
| 41 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.87E-03 |
| 42 | GO:0000049: tRNA binding | 4.65E-03 |
| 43 | GO:0004022: alcohol dehydrogenase (NAD) activity | 5.08E-03 |
| 44 | GO:0031072: heat shock protein binding | 5.08E-03 |
| 45 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.52E-03 |
| 46 | GO:0003735: structural constituent of ribosome | 6.86E-03 |
| 47 | GO:0004407: histone deacetylase activity | 6.91E-03 |
| 48 | GO:0005528: FK506 binding | 6.91E-03 |
| 49 | GO:0015079: potassium ion transmembrane transporter activity | 7.40E-03 |
| 50 | GO:0030570: pectate lyase activity | 8.95E-03 |
| 51 | GO:0005215: transporter activity | 9.62E-03 |
| 52 | GO:0004812: aminoacyl-tRNA ligase activity | 1.00E-02 |
| 53 | GO:0016597: amino acid binding | 1.62E-02 |
| 54 | GO:0008168: methyltransferase activity | 1.64E-02 |
| 55 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.96E-02 |
| 56 | GO:0015238: drug transmembrane transporter activity | 2.11E-02 |
| 57 | GO:0004222: metalloendopeptidase activity | 2.18E-02 |
| 58 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.48E-02 |
| 59 | GO:0005509: calcium ion binding | 2.84E-02 |
| 60 | GO:0004185: serine-type carboxypeptidase activity | 2.88E-02 |
| 61 | GO:0043621: protein self-association | 3.05E-02 |
| 62 | GO:0015293: symporter activity | 3.13E-02 |
| 63 | GO:0051287: NAD binding | 3.30E-02 |
| 64 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.56E-02 |
| 65 | GO:0016298: lipase activity | 3.65E-02 |
| 66 | GO:0015171: amino acid transmembrane transporter activity | 3.83E-02 |
| 67 | GO:0016874: ligase activity | 4.39E-02 |
| 68 | GO:0051082: unfolded protein binding | 4.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 9.32E-27 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.30E-14 |
| 4 | GO:0009570: chloroplast stroma | 8.05E-12 |
| 5 | GO:0009941: chloroplast envelope | 6.32E-10 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.57E-08 |
| 7 | GO:0009534: chloroplast thylakoid | 1.73E-07 |
| 8 | GO:0009579: thylakoid | 2.19E-05 |
| 9 | GO:0031977: thylakoid lumen | 2.25E-05 |
| 10 | GO:0034707: chloride channel complex | 3.53E-05 |
| 11 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.31E-04 |
| 12 | GO:0009547: plastid ribosome | 1.31E-04 |
| 13 | GO:0080085: signal recognition particle, chloroplast targeting | 3.03E-04 |
| 14 | GO:0030095: chloroplast photosystem II | 3.34E-04 |
| 15 | GO:0000312: plastid small ribosomal subunit | 3.34E-04 |
| 16 | GO:0033281: TAT protein transport complex | 4.99E-04 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 5.12E-04 |
| 18 | GO:0019898: extrinsic component of membrane | 1.04E-03 |
| 19 | GO:0055035: plastid thylakoid membrane | 1.20E-03 |
| 20 | GO:0043231: intracellular membrane-bounded organelle | 1.37E-03 |
| 21 | GO:0009533: chloroplast stromal thylakoid | 2.06E-03 |
| 22 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.73E-03 |
| 23 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.08E-03 |
| 24 | GO:0032040: small-subunit processome | 4.65E-03 |
| 25 | GO:0000311: plastid large ribosomal subunit | 4.65E-03 |
| 26 | GO:0019013: viral nucleocapsid | 5.08E-03 |
| 27 | GO:0009508: plastid chromosome | 5.08E-03 |
| 28 | GO:0005840: ribosome | 8.87E-03 |
| 29 | GO:0022627: cytosolic small ribosomal subunit | 1.46E-02 |
| 30 | GO:0046658: anchored component of plasma membrane | 1.46E-02 |
| 31 | GO:0010319: stromule | 1.55E-02 |
| 32 | GO:0009295: nucleoid | 1.55E-02 |
| 33 | GO:0030529: intracellular ribonucleoprotein complex | 1.68E-02 |
| 34 | GO:0016020: membrane | 1.87E-02 |
| 35 | GO:0031969: chloroplast membrane | 2.12E-02 |