co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G25520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0006042: glucosamine biosynthetic process	0.00E+00
3	GO:0006592: ornithine biosynthetic process	0.00E+00
4	GO:1901137: carbohydrate derivative biosynthetic process	0.00E+00
5	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
6	GO:0043201: response to leucine	0.00E+00
7	GO:0019500: cyanide catabolic process	0.00E+00
8	GO:0080052: response to histidine	0.00E+00
9	GO:0080053: response to phenylalanine	0.00E+00
10	GO:0002376: immune system process	0.00E+00
11	GO:0030149: sphingolipid catabolic process	0.00E+00
12	GO:0006457: protein folding	2.29E-10
13	GO:0034976: response to endoplasmic reticulum stress	4.56E-09
14	GO:0046686: response to cadmium ion	3.38E-07
15	GO:0000162: tryptophan biosynthetic process	3.95E-07
16	GO:0045454: cell redox homeostasis	2.16E-06
17	GO:0030968: endoplasmic reticulum unfolded protein response	2.29E-06
18	GO:0072334: UDP-galactose transmembrane transport	1.03E-05
19	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	6.56E-05
20	GO:0006605: protein targeting	1.13E-04
21	GO:0009553: embryo sac development	1.33E-04
22	GO:0051791: medium-chain fatty acid metabolic process	1.56E-04
23	GO:0051938: L-glutamate import	1.56E-04
24	GO:0006047: UDP-N-acetylglucosamine metabolic process	1.56E-04
25	GO:0019499: cyanide metabolic process	1.56E-04
26	GO:0051775: response to redox state	1.56E-04
27	GO:0042964: thioredoxin reduction	1.56E-04
28	GO:0043266: regulation of potassium ion transport	1.56E-04
29	GO:0051410: detoxification of nitrogen compound	1.56E-04
30	GO:0019276: UDP-N-acetylgalactosamine metabolic process	1.56E-04
31	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.56E-04
32	GO:0015780: nucleotide-sugar transport	1.73E-04
33	GO:0010150: leaf senescence	3.50E-04
34	GO:0030003: cellular cation homeostasis	3.55E-04
35	GO:0019752: carboxylic acid metabolic process	3.55E-04
36	GO:0042939: tripeptide transport	3.55E-04
37	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.55E-04
38	GO:0043091: L-arginine import	3.55E-04
39	GO:0006011: UDP-glucose metabolic process	5.82E-04
40	GO:0010272: response to silver ion	5.82E-04
41	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	5.82E-04
42	GO:0055074: calcium ion homeostasis	5.82E-04
43	GO:0080147: root hair cell development	5.84E-04
44	GO:0042742: defense response to bacterium	8.06E-04
45	GO:0006979: response to oxidative stress	8.19E-04
46	GO:0033014: tetrapyrrole biosynthetic process	8.33E-04
47	GO:0010116: positive regulation of abscisic acid biosynthetic process	8.33E-04
48	GO:0009306: protein secretion	9.07E-04
49	GO:0051365: cellular response to potassium ion starvation	1.10E-03
50	GO:0042938: dipeptide transport	1.10E-03
51	GO:0080037: negative regulation of cytokinin-activated signaling pathway	1.10E-03
52	GO:0000302: response to reactive oxygen species	1.39E-03
53	GO:0045116: protein neddylation	1.40E-03
54	GO:0000304: response to singlet oxygen	1.40E-03
55	GO:0009697: salicylic acid biosynthetic process	1.40E-03
56	GO:2000762: regulation of phenylpropanoid metabolic process	1.40E-03
57	GO:0046283: anthocyanin-containing compound metabolic process	1.40E-03
58	GO:0006564: L-serine biosynthetic process	1.40E-03
59	GO:0010555: response to mannitol	2.06E-03
60	GO:0009627: systemic acquired resistance	2.22E-03
61	GO:0006955: immune response	2.42E-03
62	GO:1902074: response to salt	2.42E-03
63	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.80E-03
64	GO:0009819: drought recovery	2.80E-03
65	GO:0030091: protein repair	2.80E-03
66	GO:0030162: regulation of proteolysis	2.80E-03
67	GO:0055075: potassium ion homeostasis	2.80E-03
68	GO:0006102: isocitrate metabolic process	2.80E-03
69	GO:0009617: response to bacterium	2.82E-03
70	GO:0009651: response to salt stress	2.84E-03
71	GO:0010043: response to zinc ion	2.99E-03
72	GO:0009699: phenylpropanoid biosynthetic process	3.21E-03
73	GO:0019430: removal of superoxide radicals	3.21E-03
74	GO:0006526: arginine biosynthetic process	3.21E-03
75	GO:0010204: defense response signaling pathway, resistance gene-independent	3.21E-03
76	GO:0006099: tricarboxylic acid cycle	3.42E-03
77	GO:0009735: response to cytokinin	3.56E-03
78	GO:0046685: response to arsenic-containing substance	3.63E-03
79	GO:0006783: heme biosynthetic process	3.63E-03
80	GO:0010205: photoinhibition	4.06E-03
81	GO:0009555: pollen development	4.08E-03
82	GO:0006535: cysteine biosynthetic process from serine	4.52E-03
83	GO:0006032: chitin catabolic process	4.52E-03
84	GO:0006816: calcium ion transport	4.99E-03
85	GO:0052544: defense response by callose deposition in cell wall	4.99E-03
86	GO:0000272: polysaccharide catabolic process	4.99E-03
87	GO:0009846: pollen germination	5.28E-03
88	GO:0006790: sulfur compound metabolic process	5.48E-03
89	GO:0006486: protein glycosylation	5.66E-03
90	GO:0010075: regulation of meristem growth	5.98E-03
91	GO:0006094: gluconeogenesis	5.98E-03
92	GO:0018107: peptidyl-threonine phosphorylation	5.98E-03
93	GO:0009934: regulation of meristem structural organization	6.50E-03
94	GO:0006541: glutamine metabolic process	6.50E-03
95	GO:0006096: glycolytic process	6.69E-03
96	GO:0006886: intracellular protein transport	6.74E-03
97	GO:0048316: seed development	6.91E-03
98	GO:0046688: response to copper ion	7.04E-03
99	GO:0046854: phosphatidylinositol phosphorylation	7.04E-03
100	GO:0019344: cysteine biosynthetic process	8.16E-03
101	GO:2000377: regulation of reactive oxygen species metabolic process	8.16E-03
102	GO:0009751: response to salicylic acid	8.31E-03
103	GO:0009408: response to heat	8.46E-03
104	GO:0006874: cellular calcium ion homeostasis	8.74E-03
105	GO:0006825: copper ion transport	8.74E-03
106	GO:0003333: amino acid transmembrane transport	9.34E-03
107	GO:0016998: cell wall macromolecule catabolic process	9.34E-03
108	GO:0007131: reciprocal meiotic recombination	9.96E-03
109	GO:0030433: ubiquitin-dependent ERAD pathway	9.96E-03
110	GO:0031348: negative regulation of defense response	9.96E-03
111	GO:0071456: cellular response to hypoxia	9.96E-03
112	GO:0009625: response to insect	1.06E-02
113	GO:0042631: cellular response to water deprivation	1.25E-02
114	GO:0000413: protein peptidyl-prolyl isomerization	1.25E-02
115	GO:0010154: fruit development	1.32E-02
116	GO:0006520: cellular amino acid metabolic process	1.32E-02
117	GO:0010197: polar nucleus fusion	1.32E-02
118	GO:0048868: pollen tube development	1.32E-02
119	GO:0009646: response to absence of light	1.39E-02
120	GO:0009851: auxin biosynthetic process	1.46E-02
121	GO:0006635: fatty acid beta-oxidation	1.54E-02
122	GO:0009630: gravitropism	1.61E-02
123	GO:0030163: protein catabolic process	1.68E-02
124	GO:0009567: double fertilization forming a zygote and endosperm	1.76E-02
125	GO:0010252: auxin homeostasis	1.76E-02
126	GO:0009409: response to cold	1.87E-02
127	GO:0009615: response to virus	1.99E-02
128	GO:0009607: response to biotic stimulus	2.07E-02
129	GO:0006508: proteolysis	2.19E-02
130	GO:0015995: chlorophyll biosynthetic process	2.24E-02
131	GO:0016311: dephosphorylation	2.32E-02
132	GO:0016049: cell growth	2.32E-02
133	GO:0008219: cell death	2.41E-02
134	GO:0045087: innate immune response	2.85E-02
135	GO:0016051: carbohydrate biosynthetic process	2.85E-02
136	GO:0042542: response to hydrogen peroxide	3.32E-02
137	GO:0009744: response to sucrose	3.42E-02
138	GO:0009644: response to high light intensity	3.61E-02
139	GO:0008643: carbohydrate transport	3.61E-02
140	GO:0009965: leaf morphogenesis	3.71E-02
141	GO:0032259: methylation	3.79E-02
142	GO:0006855: drug transmembrane transport	3.81E-02
143	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.91E-02
144	GO:0042538: hyperosmotic salinity response	4.01E-02
145	GO:0009414: response to water deprivation	4.10E-02
146	GO:0009809: lignin biosynthetic process	4.22E-02
147	GO:0008152: metabolic process	4.36E-02
148	GO:0006857: oligopeptide transport	4.43E-02
149	GO:0009909: regulation of flower development	4.54E-02
150	GO:0009626: plant-type hypersensitive response	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
2	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
3	GO:0004164: diphthine synthase activity	0.00E+00
4	GO:0050220: prostaglandin-E synthase activity	0.00E+00
5	GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity	0.00E+00
6	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
7	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
8	GO:0008777: acetylornithine deacetylase activity	0.00E+00
9	GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity	0.00E+00
10	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
11	GO:0005459: UDP-galactose transmembrane transporter activity	1.78E-07
12	GO:0003756: protein disulfide isomerase activity	1.47E-06
13	GO:0051082: unfolded protein binding	1.02E-05
14	GO:0005460: UDP-glucose transmembrane transporter activity	1.03E-05
15	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	1.56E-04
16	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	1.56E-04
17	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.56E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.56E-04
19	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.56E-04
20	GO:0097367: carbohydrate derivative binding	1.56E-04
21	GO:0004048: anthranilate phosphoribosyltransferase activity	1.56E-04
22	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.56E-04
23	GO:0004325: ferrochelatase activity	1.56E-04
24	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	1.56E-04
25	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.56E-04
26	GO:0019781: NEDD8 activating enzyme activity	3.55E-04
27	GO:0004338: glucan exo-1,3-beta-glucosidase activity	3.55E-04
28	GO:0042937: tripeptide transporter activity	3.55E-04
29	GO:0050017: L-3-cyanoalanine synthase activity	3.55E-04
30	GO:0000030: mannosyltransferase activity	5.82E-04
31	GO:0016531: copper chaperone activity	5.82E-04
32	GO:0004148: dihydrolipoyl dehydrogenase activity	5.82E-04
33	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.82E-04
34	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	5.82E-04
35	GO:0004049: anthranilate synthase activity	5.82E-04
36	GO:0005509: calcium ion binding	6.87E-04
37	GO:0004298: threonine-type endopeptidase activity	7.05E-04
38	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	8.33E-04
39	GO:0015189: L-lysine transmembrane transporter activity	8.33E-04
40	GO:0015181: arginine transmembrane transporter activity	8.33E-04
41	GO:0004449: isocitrate dehydrogenase (NAD+) activity	8.33E-04
42	GO:0016656: monodehydroascorbate reductase (NADH) activity	8.33E-04
43	GO:0008233: peptidase activity	9.25E-04
44	GO:0004834: tryptophan synthase activity	1.10E-03
45	GO:0042936: dipeptide transporter activity	1.10E-03
46	GO:0005313: L-glutamate transmembrane transporter activity	1.10E-03
47	GO:0016746: transferase activity, transferring acyl groups	1.18E-03
48	GO:0008641: small protein activating enzyme activity	1.40E-03
49	GO:0003997: acyl-CoA oxidase activity	1.40E-03
50	GO:0030976: thiamine pyrophosphate binding	1.72E-03
51	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.72E-03
52	GO:0004124: cysteine synthase activity	2.06E-03
53	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.06E-03
54	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.06E-03
55	GO:0005261: cation channel activity	2.06E-03
56	GO:0004656: procollagen-proline 4-dioxygenase activity	2.06E-03
57	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.06E-03
58	GO:0030247: polysaccharide binding	2.34E-03
59	GO:0016831: carboxy-lyase activity	2.42E-03
60	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.42E-03
61	GO:0008320: protein transmembrane transporter activity	2.42E-03
62	GO:0050897: cobalt ion binding	2.99E-03
63	GO:0008135: translation factor activity, RNA binding	3.21E-03
64	GO:0003746: translation elongation factor activity	3.27E-03
65	GO:0071949: FAD binding	3.63E-03
66	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.06E-03
67	GO:0004743: pyruvate kinase activity	4.06E-03
68	GO:0015174: basic amino acid transmembrane transporter activity	4.06E-03
69	GO:0030955: potassium ion binding	4.06E-03
70	GO:0004568: chitinase activity	4.52E-03
71	GO:0008171: O-methyltransferase activity	4.52E-03
72	GO:0004129: cytochrome-c oxidase activity	4.99E-03
73	GO:0051287: NAD binding	5.09E-03
74	GO:0005262: calcium channel activity	5.98E-03
75	GO:0030246: carbohydrate binding	6.40E-03
76	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.50E-03
77	GO:0005507: copper ion binding	6.97E-03
78	GO:0008061: chitin binding	7.04E-03
79	GO:0005217: intracellular ligand-gated ion channel activity	7.04E-03
80	GO:0004970: ionotropic glutamate receptor activity	7.04E-03
81	GO:0004190: aspartic-type endopeptidase activity	7.04E-03
82	GO:0051536: iron-sulfur cluster binding	8.16E-03
83	GO:0031418: L-ascorbic acid binding	8.16E-03
84	GO:0016758: transferase activity, transferring hexosyl groups	9.83E-03
85	GO:0016779: nucleotidyltransferase activity	9.96E-03
86	GO:0008810: cellulase activity	1.06E-02
87	GO:0030170: pyridoxal phosphate binding	1.12E-02
88	GO:0015297: antiporter activity	1.33E-02
89	GO:0004791: thioredoxin-disulfide reductase activity	1.39E-02
90	GO:0016853: isomerase activity	1.39E-02
91	GO:0008194: UDP-glycosyltransferase activity	1.56E-02
92	GO:0016301: kinase activity	1.68E-02
93	GO:0008483: transaminase activity	1.84E-02
94	GO:0008237: metallopeptidase activity	1.84E-02
95	GO:0000287: magnesium ion binding	2.13E-02
96	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.41E-02
97	GO:0015238: drug transmembrane transporter activity	2.50E-02
98	GO:0050660: flavin adenine dinucleotide binding	2.51E-02
99	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.85E-02
100	GO:0050661: NADP binding	3.13E-02
101	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.81E-02
102	GO:0009055: electron carrier activity	4.24E-02
103	GO:0015171: amino acid transmembrane transporter activity	4.54E-02
104	GO:0031625: ubiquitin protein ligase binding	4.54E-02
105	GO:0004674: protein serine/threonine kinase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005788: endoplasmic reticulum lumen	1.84E-16
2	GO:0005783: endoplasmic reticulum	1.31E-12
3	GO:0009507: chloroplast	3.84E-07
4	GO:0005789: endoplasmic reticulum membrane	2.04E-05
5	GO:0005829: cytosol	1.25E-04
6	GO:0019773: proteasome core complex, alpha-subunit complex	1.42E-04
7	GO:0005886: plasma membrane	1.52E-04
8	GO:0045252: oxoglutarate dehydrogenase complex	1.56E-04
9	GO:0005774: vacuolar membrane	2.91E-04
10	GO:0030134: ER to Golgi transport vesicle	3.55E-04
11	GO:0030176: integral component of endoplasmic reticulum membrane	4.74E-04
12	GO:0005839: proteasome core complex	7.05E-04
13	GO:0000502: proteasome complex	7.34E-04
14	GO:0048046: apoplast	1.09E-03
15	GO:0030660: Golgi-associated vesicle membrane	1.10E-03
16	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.10E-03
17	GO:0005746: mitochondrial respiratory chain	1.40E-03
18	GO:0016592: mediator complex	1.48E-03
19	GO:0005623: cell	1.55E-03
20	GO:0005759: mitochondrial matrix	2.00E-03
21	GO:0030173: integral component of Golgi membrane	2.06E-03
22	GO:0005801: cis-Golgi network	2.06E-03
23	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.80E-03
24	GO:0005739: mitochondrion	3.59E-03
25	GO:0009536: plastid	4.49E-03
26	GO:0005740: mitochondrial envelope	4.52E-03
27	GO:0009505: plant-type cell wall	4.67E-03
28	GO:0005765: lysosomal membrane	4.99E-03
29	GO:0031969: chloroplast membrane	5.15E-03
30	GO:0016021: integral component of membrane	7.03E-03
31	GO:0005758: mitochondrial intermembrane space	8.16E-03
32	GO:0016020: membrane	1.93E-02
33	GO:0019005: SCF ubiquitin ligase complex	2.41E-02
34	GO:0009570: chloroplast stroma	3.11E-02
35	GO:0005747: mitochondrial respiratory chain complex I	4.86E-02
36	GO:0005834: heterotrimeric G-protein complex	4.97E-02